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Conserved domains on  [gi|229892199|ref|NP_899247|]
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tumor necrosis factor ligand superfamily member 18 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TNF super family cl00147
Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT ...
 77-165 6.34e-04

Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal domain, a short transmembrane segment, an extracellular stalk, and a globular TNF-like extracellular domain of about 150 residues. They initiate apoptosis by binding to related receptors, some of which have intracellular death domains. They generally form homo- or hetero- trimeric complexes.TNF cytokines bind one elongated receptor molecule along each of three clefts formed by neighboring monomers of the trimer with ligand trimerization a requiste for receptor binding.


The actual alignment was detected with superfamily member pfam00229:

Pssm-ID: 444713  Cd Length: 127  Bit Score: 38.06  E-value: 6.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229892199   77 SDGKLKILQSGTYLIYGQVIPVDKKYIKDNAPFVVQIYKKNDVL---QTLM-------------NDFQILPIGGVYELHA 140
Cdd:pfam00229  19 SNGELVVPQAGLYYVYSQVYFRGEGCPSGSVPLTHYLYKFSSSYpgpVLLLkgaespcssenpeYWYQSIYLGGLFELRA 98

                          90       100
                  ....*....|....*....|....*...
gi 229892199  141 GDNIYLKFNSKDHI---QKTNTYWGIIL 165
Cdd:pfam00229  99 GDRLSVNVSNPSLVdlsAPGKTYFGAFL 126
 
Name Accession Description Interval E-value
TNF pfam00229
TNF(Tumour Necrosis Factor) family;
77-165 6.34e-04

TNF(Tumour Necrosis Factor) family;


Pssm-ID: 425540  Cd Length: 127  Bit Score: 38.06  E-value: 6.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229892199   77 SDGKLKILQSGTYLIYGQVIPVDKKYIKDNAPFVVQIYKKNDVL---QTLM-------------NDFQILPIGGVYELHA 140
Cdd:pfam00229  19 SNGELVVPQAGLYYVYSQVYFRGEGCPSGSVPLTHYLYKFSSSYpgpVLLLkgaespcssenpeYWYQSIYLGGLFELRA 98

                          90       100
                  ....*....|....*....|....*...
gi 229892199  141 GDNIYLKFNSKDHI---QKTNTYWGIIL 165
Cdd:pfam00229  99 GDRLSVNVSNPSLVdlsAPGKTYFGAFL 126
TNF cd00184
Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT ...
 75-164 1.17e-03

Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal domain, a short transmembrane segment, an extracellular stalk, and a globular TNF-like extracellular domain of about 150 residues. They initiate apoptosis by binding to related receptors, some of which have intracellular death domains. They generally form homo- or hetero- trimeric complexes.TNF cytokines bind one elongated receptor molecule along each of three clefts formed by neighboring monomers of the trimer with ligand trimerization a requiste for receptor binding.


Pssm-ID: 238108  Cd Length: 137  Bit Score: 37.32  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229892199  75 TTSDGKLKILQSGTYLIYGQVIPVDKKYikDNAPFVVQIYKKNDV---LQTLMNDFQILP------------IGGVYELH 139
Cdd:cd00184   33 ELQNGELVVPQDGLYYIYSQVYFRGQCC--STLSVSHVLQLRTDSypePILLLKGIRSVCssvsegwynsvyLGGLFQLR 110

                         90       100
                 ....*....|....*....|....*..
gi 229892199 140 AGDNIYLKFNSKDHI--QKTNTYWGII 164
Cdd:cd00184  111 AGDRLSVNVSAPALLdlSQGTTFFGAF 137
 
Name Accession Description Interval E-value
TNF pfam00229
TNF(Tumour Necrosis Factor) family;
77-165 6.34e-04

TNF(Tumour Necrosis Factor) family;


Pssm-ID: 425540  Cd Length: 127  Bit Score: 38.06  E-value: 6.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229892199   77 SDGKLKILQSGTYLIYGQVIPVDKKYIKDNAPFVVQIYKKNDVL---QTLM-------------NDFQILPIGGVYELHA 140
Cdd:pfam00229  19 SNGELVVPQAGLYYVYSQVYFRGEGCPSGSVPLTHYLYKFSSSYpgpVLLLkgaespcssenpeYWYQSIYLGGLFELRA 98

                          90       100
                  ....*....|....*....|....*...
gi 229892199  141 GDNIYLKFNSKDHI---QKTNTYWGIIL 165
Cdd:pfam00229  99 GDRLSVNVSNPSLVdlsAPGKTYFGAFL 126
TNF cd00184
Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT ...
 75-164 1.17e-03

Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal domain, a short transmembrane segment, an extracellular stalk, and a globular TNF-like extracellular domain of about 150 residues. They initiate apoptosis by binding to related receptors, some of which have intracellular death domains. They generally form homo- or hetero- trimeric complexes.TNF cytokines bind one elongated receptor molecule along each of three clefts formed by neighboring monomers of the trimer with ligand trimerization a requiste for receptor binding.


Pssm-ID: 238108  Cd Length: 137  Bit Score: 37.32  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 229892199  75 TTSDGKLKILQSGTYLIYGQVIPVDKKYikDNAPFVVQIYKKNDV---LQTLMNDFQILP------------IGGVYELH 139
Cdd:cd00184   33 ELQNGELVVPQDGLYYIYSQVYFRGQCC--STLSVSHVLQLRTDSypePILLLKGIRSVCssvsegwynsvyLGGLFQLR 110

                         90       100
                 ....*....|....*....|....*..
gi 229892199 140 AGDNIYLKFNSKDHI--QKTNTYWGII 164
Cdd:cd00184  111 AGDRLSVNVSAPALLdlSQGTTFFGAF 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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