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Conserved domains on  [gi|42572381|ref|NP_974286|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 50-663 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 575.40  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  50 ANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFS---------EAIRLDPHNACALTHCGIL 120
Cdd:COG3914   8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALlalaageaaAAAAALLLLAALLELAALL 87

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 121 HKEEGRLVEAAESYQKALMADASYkpaaeclAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMM 200
Cdd:COG3914  88 LQALGRYEEALALYRRALALNPDN-------AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 201 QYDNALSCYEKAALERPMYAEAYCNM-----DAGNITMAIDAYEECLKIDPDSRNAGQNRL------------------- 256
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLgnalqDLGRLEEAIAAYRRALELDPDNADAHSNLLfalrqacdwevydrfeell 240

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 257 ------------LAMNYINEGLDDKLFEAHRDWGWRFTR-LHPQYTSWDNLKDPERPITIGYISPDFFTHSVSYFIEAPL 323
Cdd:COG3914 241 aalargpselspFALLYLPDDDPAELLALARAWAQLVAAaAAPELPPPPNPRDPDRKLRIGYVSADFRRHAVGYLLEPLL 320

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 324 THHDYTKYKVVVYSAVVKADAKTYRFRDKVlkkgGVWKDIYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPA 403
Cdd:COG3914 321 EHHDRSRFEIYAYSTGPDDDALTQRLRAAA----DHWRDIPGLSDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRPA 396

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 404 PVQVTWIGYPNTTGLPTVDYRITDSLADPPDTKQKQVEELVRLPDCFLCYTPSPEAGPVCPTP-----ALSNGFVTFGSF 478
Cdd:COG3914 397 PVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYLCYQPNDRAPEVAPLPtradlGLPEGAVVFGSF 476

                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 479 NNLAKITPKVLQVWARILCAVPNSRLVVKCKPFccDSIRQRFLTTLEQLGLESKRVDLLPLILfNHDHMQAYSLMDISLD 558
Cdd:COG3914 477 NNLYKITPEVFALWARILKAVPNSVLLLKGGGL--PEARERLRAAAAARGVDPDRLIFLPRLP-RAEHLARYALADLFLD 553

                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 559 TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGHLVAKNEDEYVQLSVDLASDVTALSKLRMSLRDLMAG 638
Cdd:COG3914 554 TFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGLPELIATSEEEYVALAVALATDPELLAALRAKLRERRQT 633

                       650       660
                ....*....|....*....|....*
gi 42572381 639 SPVCNGPSFAVGLESAYRNMWKKYC 663
Cdd:COG3914 634 SPLFDTPRFARDLEAAYRQMWQRWC 658
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 50-663 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 575.40  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  50 ANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFS---------EAIRLDPHNACALTHCGIL 120
Cdd:COG3914   8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALlalaageaaAAAAALLLLAALLELAALL 87

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 121 HKEEGRLVEAAESYQKALMADASYkpaaeclAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMM 200
Cdd:COG3914  88 LQALGRYEEALALYRRALALNPDN-------AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 201 QYDNALSCYEKAALERPMYAEAYCNM-----DAGNITMAIDAYEECLKIDPDSRNAGQNRL------------------- 256
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLgnalqDLGRLEEAIAAYRRALELDPDNADAHSNLLfalrqacdwevydrfeell 240

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 257 ------------LAMNYINEGLDDKLFEAHRDWGWRFTR-LHPQYTSWDNLKDPERPITIGYISPDFFTHSVSYFIEAPL 323
Cdd:COG3914 241 aalargpselspFALLYLPDDDPAELLALARAWAQLVAAaAAPELPPPPNPRDPDRKLRIGYVSADFRRHAVGYLLEPLL 320

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 324 THHDYTKYKVVVYSAVVKADAKTYRFRDKVlkkgGVWKDIYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPA 403
Cdd:COG3914 321 EHHDRSRFEIYAYSTGPDDDALTQRLRAAA----DHWRDIPGLSDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRPA 396

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 404 PVQVTWIGYPNTTGLPTVDYRITDSLADPPDTKQKQVEELVRLPDCFLCYTPSPEAGPVCPTP-----ALSNGFVTFGSF 478
Cdd:COG3914 397 PVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYLCYQPNDRAPEVAPLPtradlGLPEGAVVFGSF 476

                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 479 NNLAKITPKVLQVWARILCAVPNSRLVVKCKPFccDSIRQRFLTTLEQLGLESKRVDLLPLILfNHDHMQAYSLMDISLD 558
Cdd:COG3914 477 NNLYKITPEVFALWARILKAVPNSVLLLKGGGL--PEARERLRAAAAARGVDPDRLIFLPRLP-RAEHLARYALADLFLD 553

                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 559 TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGHLVAKNEDEYVQLSVDLASDVTALSKLRMSLRDLMAG 638
Cdd:COG3914 554 TFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGLPELIATSEEEYVALAVALATDPELLAALRAKLRERRQT 633

                       650       660
                ....*....|....*....|....*
gi 42572381 639 SPVCNGPSFAVGLESAYRNMWKKYC 663
Cdd:COG3914 634 SPLFDTPRFARDLEAAYRQMWQRWC 658
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 284-651 2.71e-35

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 141.00  E-value: 2.71e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   284 LH-PQYTSWDNLKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSavVKADAKTyRFRDKVLKKGGVWKD 362
Cdd:pfam13844  63 LHkPPYKFPKDLSLSGGRLRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYA--LSPDDGT-NFRSKIARESEHFVD 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   363 IYGI-DEKKIASMVREDKIDILVELTGHT--ANNKLgtMACRPAPVQVTWIGYPNTTGLPTVDYRITDSLADPPDTKQKQ 439
Cdd:pfam13844 140 LSQIpCNGKAADRIHADGIHILVNMNGYTkgARNEI--FALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQY 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   440 VEELVRLPDCF-----------------LCYTPSPEAG------------------------------------------ 460
Cdd:pfam13844 218 SEKLAYMPHTFfigdhrqmfphlkeraiVTDKSDGTKVrdnvavvnatdlkpllektevkdkvkevvvvettgnsrdssk 297

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   461 -----PVCPTPALS---------------------NGFVT---------------------------------FGSFNNL 481
Cdd:pfam13844 298 vevvlPVIELPTTEpiesmiqsgqiqtsvngvvvqNGLATtqtnnkaatgeevpssivvttrqqyglpddaivYCNFNQL 377

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   482 AKITPKVLQVWARILCAVPNSRLVVkckpfccdsirQRF--------LTTLEQLGLESKRvdllplILFN-----HDHMQ 548
Cdd:pfam13844 378 YKIDPPTLEMWVNILKRVPNSVLWL-----------LRFpavgepniLATAQELGIPPGR------IVFSnvapkEEHVR 440

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   549 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGHLVAKNEDEYVQLSVDLASDVTALSKL 628
Cdd:pfam13844 441 RGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGETLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAI 520

                         490       500
                  ....*....|....*....|...
gi 42572381   629 RMSLRDLMAGSPVCNGPSFAVGL 651
Cdd:pfam13844 521 RAKVWKARTTSPLFNVKQYTQDL 543
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 47-269 6.89e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.59  E-value: 6.89e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381    47 LSYANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGR 126
Cdd:TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   127 lVEAAESYQKALMADASYKPAAECL-AIVltdlgtSLKlAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNA 205
Cdd:TIGR02917 243 -FEEAEKHADALLKKAPNSPLAHYLkALV------DFQ-KKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA 314

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 42572381   206 LScyekaalerpmYAEAYcnmdagnitmaidayeecLKIDPDSRNAgqNRLLAMNYINEGLDDK 269
Cdd:TIGR02917 315 YQ-----------YLNQI------------------LKYAPNSHQA--RRLLASIQLRLGRVDE 347
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 186-212 3.03e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 3.03e-05
                           10        20
                   ....*....|....*....|....*..
gi 42572381    186 APAYYNLGVVYSEMMQYDNALSCYEKA 212
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKA 27
ycf3 CHL00033
photosystem I assembly protein Ycf3
 159-226 4.04e-04

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 41.53  E-value: 4.04e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42572381  159 GTSLKLAGNTQEGIQKYYEALK--IDPhYAPAY--YNLGVVYSEMMQYDNALScYEKAALER-PMYAEAYCNM 226
Cdd:CHL00033  42 GMSAQSEGEYAEALQNYYEAMRleIDP-YDRSYilYNIGLIHTSNGEHTKALE-YYFQALERnPFLPQALNNM 112
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 50-663 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 575.40  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  50 ANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFS---------EAIRLDPHNACALTHCGIL 120
Cdd:COG3914   8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALlalaageaaAAAAALLLLAALLELAALL 87

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 121 HKEEGRLVEAAESYQKALMADASYkpaaeclAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMM 200
Cdd:COG3914  88 LQALGRYEEALALYRRALALNPDN-------AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 201 QYDNALSCYEKAALERPMYAEAYCNM-----DAGNITMAIDAYEECLKIDPDSRNAGQNRL------------------- 256
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLgnalqDLGRLEEAIAAYRRALELDPDNADAHSNLLfalrqacdwevydrfeell 240

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 257 ------------LAMNYINEGLDDKLFEAHRDWGWRFTR-LHPQYTSWDNLKDPERPITIGYISPDFFTHSVSYFIEAPL 323
Cdd:COG3914 241 aalargpselspFALLYLPDDDPAELLALARAWAQLVAAaAAPELPPPPNPRDPDRKLRIGYVSADFRRHAVGYLLEPLL 320

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 324 THHDYTKYKVVVYSAVVKADAKTYRFRDKVlkkgGVWKDIYGIDEKKIASMVREDKIDILVELTGHTANNKLGTMACRPA 403
Cdd:COG3914 321 EHHDRSRFEIYAYSTGPDDDALTQRLRAAA----DHWRDIPGLSDEEAAELIRADGIDILVDLSGHTAGNRLGVFALRPA 396

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 404 PVQVTWIGYPNTTGLPTVDYRITDSLADPPDTKQKQVEELVRLPDCFLCYTPSPEAGPVCPTP-----ALSNGFVTFGSF 478
Cdd:COG3914 397 PVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYLCYQPNDRAPEVAPLPtradlGLPEGAVVFGSF 476

                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 479 NNLAKITPKVLQVWARILCAVPNSRLVVKCKPFccDSIRQRFLTTLEQLGLESKRVDLLPLILfNHDHMQAYSLMDISLD 558
Cdd:COG3914 477 NNLYKITPEVFALWARILKAVPNSVLLLKGGGL--PEARERLRAAAAARGVDPDRLIFLPRLP-RAEHLARYALADLFLD 553

                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 559 TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGHLVAKNEDEYVQLSVDLASDVTALSKLRMSLRDLMAG 638
Cdd:COG3914 554 TFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGLPELIATSEEEYVALAVALATDPELLAALRAKLRERRQT 633

                       650       660
                ....*....|....*....|....*
gi 42572381 639 SPVCNGPSFAVGLESAYRNMWKKYC 663
Cdd:COG3914 634 SPLFDTPRFARDLEAAYRQMWQRWC 658
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 284-651 2.71e-35

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 141.00  E-value: 2.71e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   284 LH-PQYTSWDNLKDPERPITIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSavVKADAKTyRFRDKVLKKGGVWKD 362
Cdd:pfam13844  63 LHkPPYKFPKDLSLSGGRLRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYA--LSPDDGT-NFRSKIARESEHFVD 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   363 IYGI-DEKKIASMVREDKIDILVELTGHT--ANNKLgtMACRPAPVQVTWIGYPNTTGLPTVDYRITDSLADPPDTKQKQ 439
Cdd:pfam13844 140 LSQIpCNGKAADRIHADGIHILVNMNGYTkgARNEI--FALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQY 217

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   440 VEELVRLPDCF-----------------LCYTPSPEAG------------------------------------------ 460
Cdd:pfam13844 218 SEKLAYMPHTFfigdhrqmfphlkeraiVTDKSDGTKVrdnvavvnatdlkpllektevkdkvkevvvvettgnsrdssk 297

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   461 -----PVCPTPALS---------------------NGFVT---------------------------------FGSFNNL 481
Cdd:pfam13844 298 vevvlPVIELPTTEpiesmiqsgqiqtsvngvvvqNGLATtqtnnkaatgeevpssivvttrqqyglpddaivYCNFNQL 377

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   482 AKITPKVLQVWARILCAVPNSRLVVkckpfccdsirQRF--------LTTLEQLGLESKRvdllplILFN-----HDHMQ 548
Cdd:pfam13844 378 YKIDPPTLEMWVNILKRVPNSVLWL-----------LRFpavgepniLATAQELGIPPGR------IVFSnvapkEEHVR 440

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   549 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGHLVAKNEDEYVQLSVDLASDVTALSKL 628
Cdd:pfam13844 441 RGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGETLASRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAI 520

                         490       500
                  ....*....|....*....|...
gi 42572381   629 RMSLRDLMAGSPVCNGPSFAVGL 651
Cdd:pfam13844 521 RAKVWKARTTSPLFNVKQYTQDL 543
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
70-277 5.38e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 124.73  E-value: 5.38e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  70 LEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVEAAESYQKALMADASYkpaae 149
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 150 clAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCN---- 225
Cdd:COG0457  76 --AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNlgia 153

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|...
gi 42572381 226 -MDAGNITMAIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFEAHRDW 277
Cdd:COG0457 154 lEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
50-223 1.24e-31

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 123.58  E-value: 1.24e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  50 ANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVE 129
Cdd:COG0457  15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 130 AAESYQKALMADASYkpaaeclAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCY 209
Cdd:COG0457  95 ALEDYDKALELDPDD-------AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                       170
                ....*....|....
gi 42572381 210 EKAALERPMYAEAY 223
Cdd:COG0457 168 EKLEAAALAALLAA 181
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 50-294 2.06e-26

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 109.43  E-value: 2.06e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  50 ANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVE 129
Cdd:COG2956  15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 130 AAESYQKALMADASYKPAAECLAIVLTDLgtslklaGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCY 209
Cdd:COG2956  95 AEELLEKLLELDPDDAEALRLLAEIYEQE-------GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 210 EKAALERPMYAEAYCN-----MDAGNITMAIDAYEECLKIDPDsrNAGQNRLLAMNYINEGLDDKLFEAHRdwgwRFTRL 284
Cdd:COG2956 168 EKALKLDPDCARALLLlaelyLEQGDYEEAIAALERALEQDPD--YLPALPRLAELYEKLGDPEEALELLR----KALEL 241

                       250
                ....*....|
gi 42572381 285 HPQYTSWDNL 294
Cdd:COG2956 242 DPSDDLLLAL 251
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 50-245 1.24e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 95.57  E-value: 1.24e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  50 ANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVE 129
Cdd:COG2956  83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 130 AAESYQKALMADASYKPAaeclaivLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCY 209
Cdd:COG2956 163 AIEALEKALKLDPDCARA-------LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELL 235

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 42572381 210 EKAALERP------MYAEAYcnMDAGNITMAIDAYEECLKID 245
Cdd:COG2956 236 RKALELDPsddlllALADLL--ERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 83-265 1.29e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 86.71  E-value: 1.29e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  83 KGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVEAAESYQKALMADASYKPAaeclaivLTDLGTSL 162
Cdd:COG2956  14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA-------LLELAQDY 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 163 KLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNM-----DAGNITMAIDA 237
Cdd:COG2956  87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELaelylEQGDYDEAIEA 166

                       170       180
                ....*....|....*....|....*...
gi 42572381 238 YEECLKIDPDSRNAgqNRLLAMNYINEG 265
Cdd:COG2956 167 LEKALKLDPDCARA--LLLLAELYLEQG 192
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 118-248 1.39e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 79.85  E-value: 1.39e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 118 GILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGtslklagNTQEGIQKYYEALKIDPHYAPAYYNLGVVYS 197
Cdd:COG4783  11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-------DLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 42572381 198 EMMQYDNALSCYEKAALERPMYAEAYCNM-----DAGNITMAIDAYEECLKIDPDS 248
Cdd:COG4783  84 KAGDYDEALALLEKALKLDPEHPEAYLRLarayrALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 74-217 7.58e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 77.92  E-value: 7.58e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  74 SKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVEAAESYQKALMADASYKPAAECLAI 153
Cdd:COG4783   1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 42572381 154 VLTDlgtslklAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERP 217
Cdd:COG4783  81 ALLK-------AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 96-212 1.62e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 76.58  E-value: 1.62e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  96 AFDCFSEAIRLDPHNACALTHCGILHKEEGRLVEAAESYQKALMADASYkpaaeclAIVLTDLGTSLKLAGNTQEGIQKY 175
Cdd:COG4235   2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN-------ADALLDLAEALLAAGDTEEAEELL 74

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 42572381 176 YEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKA 212
Cdd:COG4235  75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 47-185 6.38e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 75.23  E-value: 6.38e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  47 LSYANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGR 126
Cdd:COG4783   8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 42572381 127 LVEAAESYQKALMADASYkpaaeclAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHY 185
Cdd:COG4783  88 YDEALALLEKALKLDPEH-------PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 47-269 6.89e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.59  E-value: 6.89e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381    47 LSYANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGR 126
Cdd:TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   127 lVEAAESYQKALMADASYKPAAECL-AIVltdlgtSLKlAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNA 205
Cdd:TIGR02917 243 -FEEAEKHADALLKKAPNSPLAHYLkALV------DFQ-KKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA 314

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 42572381   206 LScyekaalerpmYAEAYcnmdagnitmaidayeecLKIDPDSRNAgqNRLLAMNYINEGLDDK 269
Cdd:TIGR02917 315 YQ-----------YLNQI------------------LKYAPNSHQA--RRLLASIQLRLGRVDE 347
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 148-275 2.08e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.61  E-value: 2.08e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 148 AECLAiVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCN-- 225
Cdd:COG4783   1 AACAE-ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNlg 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 42572381 226 ---MDAGNITMAIDAYEECLKIDPDsrNAGQNRLLAMNYINEGLDDKLFEAHR 275
Cdd:COG4783  80 lalLKAGDYDEALALLEKALKLDPE--HPEAYLRLARAYRALGRPDEAIAALE 130
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 130-246 9.33e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.60  E-value: 9.33e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 130 AAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCY 209
Cdd:COG5010  32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY 111

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 42572381 210 EKAALERPMYAEAYCNM-----DAGNITMAIDAYEECLKIDP 246
Cdd:COG5010 112 EKALALSPDNPNAYSNLaalllSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 50-138 1.39e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 68.11  E-value: 1.39e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  50 ANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVE 129
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103


                ....*....
gi 42572381 130 AAESYQKAL 138
Cdd:COG4235 104 AIAAWQKLL 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 119-218 2.06e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 68.45  E-value: 2.06e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 119 ILHKEEGRLVEAAESYQKALMADASYkpaaeclAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSE 198
Cdd:COG5010  62 NLYNKLGDFEESLALLEQALQLDPNN-------PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134

                        90       100
                ....*....|....*....|
gi 42572381 199 MMQYDNALSCYEKAALERPM 218
Cdd:COG5010 135 LGQDDEAKAALQRALGTSPL 154
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 170-277 3.84e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.95  E-value: 3.84e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 170 EGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERP-------MYAEAYcnMDAGNITMAIDAYEECL 242
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPdnadallDLAEAL--LAAGDTEEAEELLERAL 78

                        90       100       110
                ....*....|....*....|....*....|....*
gi 42572381 243 KIDPDSRNAgqNRLLAMNYINEGlddKLFEAHRDW 277
Cdd:COG4235  79 ALDPDNPEA--LYLLGLAAFQQG---DYAEAIAAW 108
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 158-287 5.61e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 69.76  E-value: 5.61e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 158 LGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCN-----MDAGNIT 232
Cdd:COG2956  14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLElaqdyLKAGLLD 93

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 42572381 233 MAIDAYEECLKIDPDSRNAgqNRLLAMNYINEGLDDKLFEAHRdwgwRFTRLHPQ 287
Cdd:COG2956  94 RAEELLEKLLELDPDDAEA--LRLLAEIYEQEGDWEKAIEVLE----RLLKLGPE 142
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
122-281 5.77e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.79  E-value: 5.77e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 122 KEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQ 201
Cdd:COG4785  43 DLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD 122

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 202 YDNALSCYEKaALE-RPMYAEAYCN-----MDAGNITMAIDAYEECLKIDPDSRNAGQNRllamnYINEGLDDK---LFE 272
Cdd:COG4785 123 YDAALEDFDR-ALElDPDYAYAYLNrgialYYLGRYELAIADLEKALELDPNDPERALWL-----YLAERKLDPekaLAL 196


                ....*....
gi 42572381 273 AHRDWGWRF 281
Cdd:COG4785 197 LLEDWATAY 205
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
120-217 5.97e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 65.19  E-value: 5.97e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 120 LHKEEGRLVEAAESYQKALMADASYkpaaeclAIVLTDLGTSLKLAGNTQEGIQkYYEALKIDPHYAPAYYNLGVVYSEM 199
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDN-------ADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72

                        90
                ....*....|....*...
gi 42572381 200 MQYDNALSCYEKAALERP 217
Cdd:COG3063  73 GDYDEALAYLERALELDP 90
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
101-269 3.28e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 66.48  E-value: 3.28e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 101 SEAIRLDPHNACALTHCGILHKEEGRLVEAAESYQKALmadaSYKPAaecLAIVLTDLGTSLKLAGNTQEGIQKYYEALK 180
Cdd:COG4785  63 IDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQAL----ELDPD---LAEAYNNRGLAYLLLGDYDAALEDFDRALE 135

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 181 IDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYcnmdagnitmaIDAYEECLKIDPDSRNAGQNRLLAMN 260
Cdd:COG4785 136 LDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERA-----------LWLYLAERKLDPEKALALLLEDWATA 204


                ....*....
gi 42572381 261 YINEGLDDK 269
Cdd:COG4785 205 YLLQGDTEE 213
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
52-143 9.78e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 61.72  E-value: 9.78e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  52 ILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDcFSEAIRLDPHNACALTHCGILHKEEGRLVEAA 131
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                        90
                ....*....|..
gi 42572381 132 ESYQKALMADAS 143
Cdd:COG3063  80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 49-141 1.12e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.44  E-value: 1.12e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  49 YANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLV 128
Cdd:COG5010  60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139

                        90
                ....*....|...
gi 42572381 129 EAAESYQKALMAD 141
Cdd:COG5010 140 EAKAALQRALGTS 152
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 49-182 1.79e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.52  E-value: 1.79e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  49 YANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLV 128
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....
gi 42572381 129 EAAESYQKALMADASykpaaeclAIVLTDLGTSLKLAGNTQEGIQKYYEALKID 182
Cdd:COG2956 230 EALELLRKALELDPS--------DDLLLALADLLERKEGLEAALALLERQLRRH 275
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 56-248 2.50e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 60.87  E-value: 2.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381    56 RNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVEAAESYQ 135
Cdd:TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   136 KALMADASYKPAAECLAivltdlgtSLKLA-GNTQEGIQKYYEALKIDP-HYAPAyYNLGVVYSEMMQYDNALSCYEKAA 213
Cdd:TIGR02917 524 KVLTIDPKNLRAILALA--------GLYLRtGNEEEAVAWLEKAAELNPqEIEPA-LALAQYYLGKGQLKKALAILNEAA 594

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 42572381   214 LERPMYAEAY-----CNMDAGNITMAIDAYEECLKIDPDS 248
Cdd:TIGR02917 595 DAAPDSPEAWlmlgrAQLAAGDLNKAVSSFKKLLALQPDS 634
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 129-259 2.77e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.78  E-value: 2.77e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 129 EAAESYQKALMADASYKPAAECLAIVLTDLGtslklagNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSC 208
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLG-------RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL 73

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 42572381 209 YEKAALERPMYAEAY-----CNMDAGNITMAIDAYEECLKIDPDSRNAGQ-NRLLAM 259
Cdd:COG4235  74 LERALALDPDNPEALyllglAAFQQGDYAEAIAAWQKLLALLPADAPARLlEASIAE 130
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 44-277 8.00e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 59.33  E-value: 8.00e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381    44 NDTLSYANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKE 123
Cdd:TIGR02917 228 AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   124 EGRLVEAAESYQKALMADASYKPAAECLAIVLtdlgtsLKLaGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYD 203
Cdd:TIGR02917 308 LGNLEQAYQYLNQILKYAPNSHQARRLLASIQ------LRL-GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 42572381   204 NALSCYEKAALERPMYAEAYC-----NMDAGNITMAIDAYEECLKIDPDSRNAGqnRLLAMNYINEGLDDKLFEAHRDW 277
Cdd:TIGR02917 381 KAAEYLAKATELDPENAAARTqlgisKLSQGDPSEAIADLETAAQLDPELGRAD--LLLILSYLRSGQFDKALAAAKKL 457
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
60-243 9.08e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.46  E-value: 9.08e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  60 ADALALYEAMLEKDS------KNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVEAAES 133
Cdd:COG4785  50 AAALAAAALAAERIDralalpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALED 129

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 134 YQKALMADASYkpaaeclAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQydnalscyeKAA 213
Cdd:COG4785 130 FDRALELDPDY-------AYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDP---------EKA 193

                       170       180       190
                ....*....|....*....|....*....|
gi 42572381 214 LERPMYAEAYCNMDAGNITMAIDAYEECLK 243
Cdd:COG4785 194 LALLLEDWATAYLLQGDTEEARELFKLALA 223
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 50-216 1.02e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 58.94  E-value: 1.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381    50 ANILRARNKFADALALYEAMLEKDSKNVEAHIG-KGICLQTQNKGNlAFDCFSEAIRLDPHN---ACALTHCGILHKEEG 125
Cdd:TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAlAGLYLRTGNEEE-AVAWLEKAAELNPQEiepALALAQYYLGKGQLK 584

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   126 RLVEAAESYQKAlmadasYKPAAECLAIvltdLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNA 205
Cdd:TIGR02917 585 KALAILNEAADA------APDSPEAWLM----LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKA 654

                         170
                  ....*....|.
gi 42572381   206 LSCYEKaALER 216
Cdd:TIGR02917 655 ITSLKR-ALEL 664
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
50-194 3.02e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.92  E-value: 3.02e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  50 ANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVE 129
Cdd:COG4785  80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 42572381 130 AAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEgIQKYYEALKiDPHYAPAYYNLGV 194
Cdd:COG4785 160 AIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLED-WATAYLLQG-DTEEARELFKLAL 222
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 165-255 3.96e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.92  E-value: 3.96e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 165 AGNTQEGIQKYYEALKIDPH--YAP-AYYNLGVVYSEMMQYDNALSCYEKAALERP--------MYAEAYCNMDAGNITM 233
Cdd:COG1729   6 AGDYDEAIAAFKAFLKRYPNspLAPdALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspkapdaLLKLGLSYLELGDYDK 85

                        90       100
                ....*....|....*....|..
gi 42572381 234 AIDAYEECLKIDPDSRNAGQNR 255
Cdd:COG1729  86 ARATLEELIKKYPDSEAAKEAR 107
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 47-251 7.32e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.86  E-value: 7.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381    47 LSYANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGR 126
Cdd:TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   127 LVEAAESYQKaLMADASYKPAAEclaIVLTDLGTSLKlagNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNAL 206
Cdd:TIGR02917 617 LNKAVSSFKK-LLALQPDSALAL---LLLADAYAVMK---NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 42572381   207 SCYEKAALERPMYA-----EAYCNMDAGNITMAIDAYEECLKIDPDSRNA 251
Cdd:TIGR02917 690 KIAKSLQKQHPKAAlgfelEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA 739
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 50-212 8.39e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 55.86  E-value: 8.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381    50 ANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVE 129
Cdd:TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   130 AAESYQKALMADASYKPAAEclaivltdLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCY 209
Cdd:TIGR02917 722 AIQAYRKALKRAPSSQNAIK--------LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY 793


                  ...
gi 42572381   210 EKA 212
Cdd:TIGR02917 794 QTV 796
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 134-265 1.01e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.88  E-value: 1.01e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 134 YQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAA 213
Cdd:COG5010   2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 42572381 214 LERPMYAEAYCN-----MDAGNITMAIDAYEECLKIDPDSRNAGQNrlLAMNYINEG 265
Cdd:COG5010  82 QLDPNNPELYYNlallySRSGDKDEAKEYYEKALALSPDNPNAYSN--LAALLLSLG 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 47-111 1.70e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.69  E-value: 1.70e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 42572381  47 LSYANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNA 111
Cdd:COG4235  55 LDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 103-211 2.70e-06

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 49.26  E-value: 2.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   103 AIRLDPHNACALTHCGILHKEEGRLVEAAESYQKAL------------------------MADASYKPAAECL-----AI 153
Cdd:TIGR02521  57 ALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALtlnpnngdvlnnygtflcqqgkyeQAMQQFEQAIEDPlypqpAR 136

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 42572381   154 VLTDLGTSLKLAGNTqEGIQKYY-EALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEK 211
Cdd:TIGR02521 137 SLENAGLCALKAGDF-DKAEKYLtRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194
TPR_1 pfam00515
Tetratricopeptide repeat;
186-212 2.74e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.33  E-value: 2.74e-06
                          10        20
                  ....*....|....*....|....*..
gi 42572381   186 APAYYNLGVVYSEMMQYDNALSCYEKA 212
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKA 27
TPR_12 pfam13424
Tetratricopeptide repeat;
151-212 3.35e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.46  E-value: 3.35e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   151 LAIVLTDLGTSLKLAGNTQEGIQKYYEALKI--------DPHYAPAYYNLGVVYSEMMQYDNALSCYEKA 212
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERA 71
TPR_12 pfam13424
Tetratricopeptide repeat;
188-247 3.76e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 3.76e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42572381   188 AYYNLGVVYSEMMQYDNALSCYEKAAL--------ERPMYAEAYCNM-----DAGNITMAIDAYEECLKIDPD 247
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLgrlylELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
195-277 6.90e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.16  E-value: 6.90e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 195 VYSEMMQYDNALSCYEKAALERPMYAEAYCNM-----DAGNITMAIdAYEECLKIDPDSRNAGQNrlLAMNYINEGlddK 269
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLgllllEQGRYDEAI-ALEKALKLDPNNAEALLN--LAELLLELG---D 74


                ....*...
gi 42572381 270 LFEAHRDW 277
Cdd:COG3063  75 YDEALAYL 82
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 47-141 1.78e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 1.78e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  47 LSYANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGr 126
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEG- 260

                        90
                ....*....|....*
gi 42572381 127 LVEAAESYQKALMAD 141
Cdd:COG2956 261 LEAALALLERQLRRH 275
TPR_11 pfam13414
TPR repeat;
166-199 2.04e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 42.07  E-value: 2.04e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 42572381   166 GNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEM 199
Cdd:pfam13414   8 GKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 186-212 3.03e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 3.03e-05
                           10        20
                   ....*....|....*....|....*..
gi 42572381    186 APAYYNLGVVYSEMMQYDNALSCYEKA 212
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKA 27
TPR_12 pfam13424
Tetratricopeptide repeat;
111-181 5.74e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.99  E-value: 5.74e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42572381   111 ACALTHCGILHKEEGRLVEAAESYQKAL-MADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKI 181
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALeIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 189-269 8.27e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 8.27e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 189 YYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNM-----DAGNITMAIDAYEECLKIDPDSRNAgqNRLLAMNYIN 263
Cdd:COG2956  11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALgnlyrRRGEYDRAIRIHQKLLERDPDRAEA--LLELAQDYLK 88


                ....*.
gi 42572381 264 EGLDDK 269
Cdd:COG2956  89 AGLLDR 94
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
47-108 1.06e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 1.06e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42572381  47 LSYANILRARNKFADALALYEAmLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDP 108
Cdd:COG3063  30 NNLGLLLLEQGRYDEAIALEKA-LKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 73-251 2.09e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.69  E-value: 2.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381    73 DSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRLVEAAESYQKALmaDASYKPAAecla 152
Cdd:TIGR02917  18 GDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKAL--SLGYPKNQ---- 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381   153 iVLTDLGTSLKLAGNTQEGIqKYYEALKI--DPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERP-----MYAEAYCN 225
Cdd:TIGR02917  92 -VLPLLARAYLLQGKFQQVL-DELPGKTLldDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPrslyaKLGLAQLA 169

                         170       180
                  ....*....|....*....|....*.
gi 42572381   226 MDAGNITMAIDAYEECLKIDPDSRNA 251
Cdd:TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDA 195
TPR_17 pfam13431
Tetratricopeptide repeat;
175-206 2.69e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 38.68  E-value: 2.69e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 42572381   175 YYEALKIDPHYAPAYYNLGVVYSEMMQYDNAL 206
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
ycf3 CHL00033
photosystem I assembly protein Ycf3
 159-226 4.04e-04

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 41.53  E-value: 4.04e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42572381  159 GTSLKLAGNTQEGIQKYYEALK--IDPhYAPAY--YNLGVVYSEMMQYDNALScYEKAALER-PMYAEAYCNM 226
Cdd:CHL00033  42 GMSAQSEGEYAEALQNYYEAMRleIDP-YDRSYilYNIGLIHTSNGEHTKALE-YYFQALERnPFLPQALNNM 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 47-108 5.23e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 5.23e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42572381  47 LSYANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDP 108
Cdd:COG5010  92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR_19 pfam14559
Tetratricopeptide repeat;
165-223 8.68e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.33  E-value: 8.68e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 42572381   165 AGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAY 223
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
151-268 1.31e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 41.02  E-value: 1.31e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381 151 LAIVLTDLGTSlKLAGNTQEGIQKY------YEALKIDPHYAPAYYN---LGVVYSEMMQYDNALSCYEKaALERP---- 217
Cdd:COG4700  46 FAEVLPELRNS-RDARRVQRAARNAldpgreLRELEKALEFADTVQNrvrLADALLELGRYDEAIELYEE-ALTGIfadd 123

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....
gi 42572381 218 ---MYAEAYCNMDAGNITMAIDAYEECLKIDPDSRNAGQNRLLAMNYinEGLDD 268
Cdd:COG4700 124 phiLLGLAQALFELGRYAEALETLEKLIAKNPDFKSSDAHLLYARAL--EALGD 175
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 50-111 1.46e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.70  E-value: 1.46e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 42572381    50 ANILRARNKFADALALYEAMLEKDSK---NVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNA 111
Cdd:pfam13432   4 ARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
48-178 1.58e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.76  E-value: 1.58e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  48 SYANILRARNKFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHCGILHKEEGRL 127
Cdd:COG0457 115 NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAE 194

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 42572381 128 VEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYEA 178
Cdd:COG0457 195 VLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
TPR_1 pfam00515
Tetratricopeptide repeat;
77-110 2.73e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 2.73e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 42572381    77 VEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHN 110
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 60-142 3.61e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 40.28  E-value: 3.61e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572381  60 ADALALYEAMLEKDSKNVEAHIGKG-ICLQTQNKGnLAFDCFSEAIRLDPhNACALTHCGILHKEEGRLVEAAESYQKAL 138
Cdd:COG3071 241 AKQLKRAEKWLKKHPNDPDLLLALGrLCLRNQLWG-KAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKAL 318


                ....
gi 42572381 139 MADA 142
Cdd:COG3071 319 ALAL 322
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 220-247 5.34e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 5.34e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 42572381    220 AEAYCNM-----DAGNITMAIDAYEECLKIDPD 247
Cdd:smart00028   1 AEALYNLgnaylKLGDYDEALEYYEKALELDPN 33
TPR_8 pfam13181
Tetratricopeptide repeat;
186-212 7.07e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 34.68  E-value: 7.07e-03
                          10        20
                  ....*....|....*....|....*..
gi 42572381   186 APAYYNLGVVYSEMMQYDNALSCYEKA 212
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKA 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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