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Conserved domains on  [gi|446450133|ref|WP_000527988|]
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MULTISPECIES: acid-soluble spore protein SspN [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SspN super family cl27883
Small acid-soluble spore protein N family; This family consists of the small acid-soluble ...
 1-41 1.87e-09

Small acid-soluble spore protein N family; This family consists of the small acid-soluble spore protein (SASP) N type (sspN). SspN is a 48 residues protein that is expressed only in the forespore compartment of sporulating Bacillus subtilis. The sspN gene is recognized equally by both sigma-G and sigma-F. The role of SspN is still not well-defined.


The actual alignment was detected with superfamily member COG5859:

Pssm-ID: 474978  Cd Length: 47  Bit Score: 46.73  E-value: 1.87e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 446450133  1 MGNPKKNSKDFAPNQIGTQSKKAGGNKGKQMQDQTGKQPIV 41
Cdd:COG5859   1 MSNPKDNSSQFAPNHLGTQPRKAGGNKGKQMQDKSNEHPQV 41
 
Name Accession Description Interval E-value
SspN COG5859
Small acid-soluble spore protein SspN [Cell cycle control, cell division, chromosome ...
 1-41 1.87e-09

Small acid-soluble spore protein SspN [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444561  Cd Length: 47  Bit Score: 46.73  E-value: 1.87e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 446450133  1 MGNPKKNSKDFAPNQIGTQSKKAGGNKGKQMQDQTGKQPIV 41
Cdd:COG5859   1 MSNPKDNSSQFAPNHLGTQPRKAGGNKGKQMQDKSNEHPQV 41
SspN pfam08177
Small acid-soluble spore protein N family; This family consists of the small acid-soluble ...
 1-41 8.29e-09

Small acid-soluble spore protein N family; This family consists of the small acid-soluble spore protein (SASP) N type (sspN). SspN is a 48 residues protein that is expressed only in the forespore compartment of sporulating Bacillus subtilis. The sspN gene is recognized equally by both sigma-G and sigma-F. The role of SspN is still not well-defined.


Pssm-ID: 285400  Cd Length: 46  Bit Score: 45.15  E-value: 8.29e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 446450133   1 MGNPKKNSKDFAPNQIGTQSKKAGGNKGKQMQDQTGKQPIV 41
Cdd:pfam08177  1 MGNPKKKSQQFVPDHLGTQPRKYGGNKGKKMQDKSGQHPQV 41
sspN PRK09398
acid-soluble spore protein N; Provisional
 1-41 1.29e-08

acid-soluble spore protein N; Provisional


Pssm-ID: 236496  Cd Length: 47  Bit Score: 44.38  E-value: 1.29e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 446450133  1 MGNPKKNSKDFAPNQIGTQSKKAGGNKGKQMQDQTGKQPIV 41
Cdd:PRK09398  1 MGNPKKNSKQFAPNHLGTQPRKAGGNKGKKMQDQSGKQPQV 41
 
Name Accession Description Interval E-value
SspN COG5859
Small acid-soluble spore protein SspN [Cell cycle control, cell division, chromosome ...
 1-41 1.87e-09

Small acid-soluble spore protein SspN [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444561  Cd Length: 47  Bit Score: 46.73  E-value: 1.87e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 446450133  1 MGNPKKNSKDFAPNQIGTQSKKAGGNKGKQMQDQTGKQPIV 41
Cdd:COG5859   1 MSNPKDNSSQFAPNHLGTQPRKAGGNKGKQMQDKSNEHPQV 41
SspN pfam08177
Small acid-soluble spore protein N family; This family consists of the small acid-soluble ...
 1-41 8.29e-09

Small acid-soluble spore protein N family; This family consists of the small acid-soluble spore protein (SASP) N type (sspN). SspN is a 48 residues protein that is expressed only in the forespore compartment of sporulating Bacillus subtilis. The sspN gene is recognized equally by both sigma-G and sigma-F. The role of SspN is still not well-defined.


Pssm-ID: 285400  Cd Length: 46  Bit Score: 45.15  E-value: 8.29e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 446450133   1 MGNPKKNSKDFAPNQIGTQSKKAGGNKGKQMQDQTGKQPIV 41
Cdd:pfam08177  1 MGNPKKKSQQFVPDHLGTQPRKYGGNKGKKMQDKSGQHPQV 41
sspN PRK09398
acid-soluble spore protein N; Provisional
 1-41 1.29e-08

acid-soluble spore protein N; Provisional


Pssm-ID: 236496  Cd Length: 47  Bit Score: 44.38  E-value: 1.29e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 446450133  1 MGNPKKNSKDFAPNQIGTQSKKAGGNKGKQMQDQTGKQPIV 41
Cdd:PRK09398  1 MGNPKKNSKQFAPNHLGTQPRKAGGNKGKKMQDQSGKQPQV 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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