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Conserved domains on  [gi|446572308|ref|WP_000649654|]
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MULTISPECIES: YihD family protein [Gammaproteobacteria]

Protein Classification

YihD family protein( domain architecture ID 10006908)

YihD family protein is a DUF1040 domain-containing protein; similar to Haemophilus influenzae protein HI_0845

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YihD COG3084
Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];
1-88 3.55e-50

Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];


:

Pssm-ID: 442318  Cd Length: 89  Bit Score: 152.44  E-value: 3.55e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446572308  1 MKCHRVEELLQLLEPEWHKDSELNLIQFLLKLAQEAGYQGALEDLTDDVLIYHLKMRNSAKDAVIPGLKKDYEDDFKTAI 80
Cdd:COG3084   1 MKCHRLNELIELLQPAWQKEPDLNLLQFLQKLAEEAGFDGPLSELTDDVLIYHLKMRGSDKDEMIPGLKKDYEDDFKTAL 80


                ....*...
gi 446572308 81 LRARGIIK 88
Cdd:COG3084  81 LRARGIIK 88
 
Name Accession Description Interval E-value
YihD COG3084
Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];
1-88 3.55e-50

Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];


Pssm-ID: 442318  Cd Length: 89  Bit Score: 152.44  E-value: 3.55e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446572308  1 MKCHRVEELLQLLEPEWHKDSELNLIQFLLKLAQEAGYQGALEDLTDDVLIYHLKMRNSAKDAVIPGLKKDYEDDFKTAI 80
Cdd:COG3084   1 MKCHRLNELIELLQPAWQKEPDLNLLQFLQKLAEEAGFDGPLSELTDDVLIYHLKMRGSDKDEMIPGLKKDYEDDFKTAL 80


                ....*...
gi 446572308 81 LRARGIIK 88
Cdd:COG3084  81 LRARGIIK 88
DUF1040 pfam06288
Protein of unknown function (DUF1040); This family consists of several bacterial YihD proteins ...
 1-86 1.69e-44

Protein of unknown function (DUF1040); This family consists of several bacterial YihD proteins of unknown function.


Pssm-ID: 428867  Cd Length: 86  Bit Score: 138.24  E-value: 1.69e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446572308   1 MKCHRVEELLQLLEPEWHKDSELNLIQFLLKLAQEAGYQGALEDLTDDVLIYHLKMRNSAKDAVIPGLKKDYEDDFKTAI 80
Cdd:pfam06288  1 MKCHRINELLELLQPAWQKEPDLNLLQFLQKLAEEAGFEGPLEDLTDDVLIYHLKMRGSDKTEMIPGLKKDYEEDFKTAL 80


                 ....*.
gi 446572308  81 LRARGI 86
Cdd:pfam06288 81 LRARGI 86
 
Name Accession Description Interval E-value
YihD COG3084
Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];
1-88 3.55e-50

Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];


Pssm-ID: 442318  Cd Length: 89  Bit Score: 152.44  E-value: 3.55e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446572308  1 MKCHRVEELLQLLEPEWHKDSELNLIQFLLKLAQEAGYQGALEDLTDDVLIYHLKMRNSAKDAVIPGLKKDYEDDFKTAI 80
Cdd:COG3084   1 MKCHRLNELIELLQPAWQKEPDLNLLQFLQKLAEEAGFDGPLSELTDDVLIYHLKMRGSDKDEMIPGLKKDYEDDFKTAL 80


                ....*...
gi 446572308 81 LRARGIIK 88
Cdd:COG3084  81 LRARGIIK 88
DUF1040 pfam06288
Protein of unknown function (DUF1040); This family consists of several bacterial YihD proteins ...
 1-86 1.69e-44

Protein of unknown function (DUF1040); This family consists of several bacterial YihD proteins of unknown function.


Pssm-ID: 428867  Cd Length: 86  Bit Score: 138.24  E-value: 1.69e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446572308   1 MKCHRVEELLQLLEPEWHKDSELNLIQFLLKLAQEAGYQGALEDLTDDVLIYHLKMRNSAKDAVIPGLKKDYEDDFKTAI 80
Cdd:pfam06288  1 MKCHRINELLELLQPAWQKEPDLNLLQFLQKLAEEAGFEGPLEDLTDDVLIYHLKMRGSDKTEMIPGLKKDYEEDFKTAL 80


                 ....*.
gi 446572308  81 LRARGI 86
Cdd:pfam06288 81 LRARGI 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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