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Conserved domains on  [gi|447143330|ref|WP_001220586|]
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MULTISPECIES: flagellar type III secretion system pore protein FliP [Bacillus]

Protein Classification

flagellar type III secretion system pore protein FliP( domain architecture ID 10012525)

flagellar type III secretion system pore protein FliP plays a role in flagellum-specific transport system

Gene Ontology:  GO:0009306|GO:0001539
PubMed:  29076571
TCDB:  3.A.6

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 5-252 1.09e-73

flagellar biosynthesis protein FliP; Reviewed


:

Pssm-ID: 235566  Cd Length: 245  Bit Score: 224.69  E-value: 1.09e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330   5 KQLSLLAVIFVFSIVFSiifvnPAYAAQNGFINFENGKEFTS--NSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGIT 82
Cdd:PRK05699   1 AMRRLLALALLLLALAS-----AAAAAPLPGLNLLPGANGGQeySLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  83 RQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVR 162
Cdd:PRK05699  76 RQALGTQQTPPNQVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330 163 GEElPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTK 242
Cdd:PRK05699 156 GEP-PKTPEDVPLSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNL 234

                        250
                 ....*....|
gi 447143330 243 IVDIMFKTVA 252
Cdd:PRK05699 235 LVGSLVQSFG 244
 
Name Accession Description Interval E-value
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 5-252 1.09e-73

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 224.69  E-value: 1.09e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330   5 KQLSLLAVIFVFSIVFSiifvnPAYAAQNGFINFENGKEFTS--NSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGIT 82
Cdd:PRK05699   1 AMRRLLALALLLLALAS-----AAAAAPLPGLNLLPGANGGQeySLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  83 RQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVR 162
Cdd:PRK05699  76 RQALGTQQTPPNQVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330 163 GEElPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTK 242
Cdd:PRK05699 156 GEP-PKTPEDVPLSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNL 234

                        250
                 ....*....|
gi 447143330 243 IVDIMFKTVA 252
Cdd:PRK05699 235 LVGSLVQSFG 244
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
1-244 1.75e-69

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 213.82  E-value: 1.75e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330   1 MRIKKQLSLLAVIFVFsivfsiiFVNPAYAAQN----GFINFENGKEFTSNSSVQLFALVTLLSLSSSIVLLFTHFTYFM 76
Cdd:COG1338    1 MRRRLLALLLLLALLL-------LPAPALAQPGlpslSLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRII 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  77 IVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLK 156
Cdd:COG1338   74 IVLSFLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLA 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330 157 MMLKVRGEELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVY 236
Cdd:COG1338  154 LFADLAGEPPPETPEDVPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVL 233


                 ....*...
gi 447143330 237 LGGYTKIV 244
Cdd:COG1338  234 VDGWNLLV 241
FliP pfam00813
FliP family;
69-244 8.06e-66

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 202.64  E-value: 8.06e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330   69 FTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSK 148
Cdd:pfam00813  14 MTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEALERASEPLREFMLK 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  149 HTYKHDLKMMLKVRGeELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLP 228
Cdd:pfam00813  94 QTREKDLALFLDLAG-QWPETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSMGMMMLPPVTISLP 172

                         170
                  ....*....|....*.
gi 447143330  229 FKILVFVYLGGYTKIV 244
Cdd:pfam00813 173 FKLLLFVLVDGWTLLV 188
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 70-250 4.55e-42

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 142.13  E-value: 4.55e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330   70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKH 149
Cdd:TIGR01103  16 TSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEAYQKAEEPLREFMLRQ 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  150 TYKHDLKMMLKVRGEELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPF 229
Cdd:TIGR01103  96 TRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMAMGMMMLPPVMISLPF 175

                         170       180
                  ....*....|....*....|.
gi 447143330  230 KILVFVYLGGYTKIVDIMFKT 250
Cdd:TIGR01103 176 KLMLFVLVDGWNLLVGSLVQS 196
 
Name Accession Description Interval E-value
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 5-252 1.09e-73

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 224.69  E-value: 1.09e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330   5 KQLSLLAVIFVFSIVFSiifvnPAYAAQNGFINFENGKEFTS--NSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGIT 82
Cdd:PRK05699   1 AMRRLLALALLLLALAS-----AAAAAPLPGLNLLPGANGGQeySLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  83 RQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVR 162
Cdd:PRK05699  76 RQALGTQQTPPNQVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330 163 GEElPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTK 242
Cdd:PRK05699 156 GEP-PKTPEDVPLSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNL 234

                        250
                 ....*....|
gi 447143330 243 IVDIMFKTVA 252
Cdd:PRK05699 235 LVGSLVQSFG 244
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
1-244 1.75e-69

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 213.82  E-value: 1.75e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330   1 MRIKKQLSLLAVIFVFsivfsiiFVNPAYAAQN----GFINFENGKEFTSNSSVQLFALVTLLSLSSSIVLLFTHFTYFM 76
Cdd:COG1338    1 MRRRLLALLLLLALLL-------LPAPALAQPGlpslSLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRII 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  77 IVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLK 156
Cdd:COG1338   74 IVLSFLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLA 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330 157 MMLKVRGEELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVY 236
Cdd:COG1338  154 LFADLAGEPPPETPEDVPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVL 233


                 ....*...
gi 447143330 237 LGGYTKIV 244
Cdd:COG1338  234 VDGWNLLV 241
FliP pfam00813
FliP family;
69-244 8.06e-66

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 202.64  E-value: 8.06e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330   69 FTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSK 148
Cdd:pfam00813  14 MTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEALERASEPLREFMLK 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  149 HTYKHDLKMMLKVRGeELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLP 228
Cdd:pfam00813  94 QTREKDLALFLDLAG-QWPETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSMGMMMLPPVTISLP 172

                         170
                  ....*....|....*.
gi 447143330  229 FKILVFVYLGGYTKIV 244
Cdd:pfam00813 173 FKLLLFVLVDGWTLLV 188
EscR COG4790
Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and ...
 70-245 1.17e-44

Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443819  Cd Length: 216  Bit Score: 149.55  E-value: 1.17e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLgqlkSDVWDPMTKEKI------TVSQAAETTAPIMK 143
Cdd:COG4790   28 TSFLKISVVLSLLRNALGVQQVPPNMVLNGIALILTLFVMAPVG----QEIYDRLQAAPVdfsssaSVLEAVDAGLEPLR 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330 144 EYMSKHTYKHD----LKMMLKVRGEELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMM 219
Cdd:COG4790  104 DFLKKNTDPEEraffLDAAQRLWPEEYAAKLKPDDLLVLLPAFVLSELTSAFKIGFLLYLPFVVIDLVVSNILLALGMMM 183

                        170       180
                 ....*....|....*....|....*.
gi 447143330 220 VPPMILSLPFKILVFVYLGGYTKIVD 245
Cdd:COG4790  184 VSPMTISLPFKLLLFVLVDGWTLLLH 209
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 70-250 4.55e-42

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 142.13  E-value: 4.55e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330   70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKH 149
Cdd:TIGR01103  16 TSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEAYQKAEEPLREFMLRQ 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  150 TYKHDLKMMLKVRGEELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPF 229
Cdd:TIGR01103  96 TRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMAMGMMMLPPVMISLPF 175

                         170       180
                  ....*....|....*....|.
gi 447143330  230 KILVFVYLGGYTKIVDIMFKT 250
Cdd:TIGR01103 176 KLMLFVLVDGWNLLVGSLVQS 196
PRK12797 PRK12797
type III secretion system protein YscR; Provisional
 69-245 3.89e-41

type III secretion system protein YscR; Provisional


Pssm-ID: 237210  Cd Length: 213  Bit Score: 140.39  E-value: 3.89e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  69 FTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTK--EKITVSQAAETTAPIMKEYM 146
Cdd:PRK12797  27 GTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQDRLQQPPLSlqDPDSVLQLLDAALAPLRDFL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330 147 SKHT----YKHDLKMMLKVRGEELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPP 222
Cdd:PRK12797 107 KKHTdereRTFFVRSAQRIWPEEAADSLKKDDLLILIPAFTLSELTRAFEIGFLLYLPFIVIDLIISNILLAMGMMMVSP 186

                        170       180
                 ....*....|....*....|...
gi 447143330 223 MILSLPFKILVFVYLGGYTKIVD 245
Cdd:PRK12797 187 TTISLPFKLLLFVLVDGWSRLLH 209
yscR TIGR01102
type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic ...
 70-245 6.33e-38

type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130172  Cd Length: 202  Bit Score: 131.70  E-value: 6.33e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330   70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDP---MTKEKITVSQAAETTAPiMKEYM 146
Cdd:TIGR01102  19 TSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVGHQAQDRFHQEpvaYSNIDFLQKSLDAGLAP-YREFL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  147 SKHT----YKHDLKMMLKVRGEELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPP 222
Cdd:TIGR01102  98 KKNTdedeVAFFERSTQKMWPKEMADRLKKDSLLILLPAFTLSELTAAFKIGFLLYLPFIVIDLIVSNILLALGMMMVSP 177

                         170       180
                  ....*....|....*....|...
gi 447143330  223 MILSLPFKILVFVYLGGYTKIVD 245
Cdd:TIGR01102 178 MTISLPFKLLLFVLIDGWSRLLH 200
PRK12430 PRK12430
putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
 70-244 1.50e-31

putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional


Pssm-ID: 237101 [Multi-domain]  Cd Length: 379  Bit Score: 119.22  E-value: 1.50e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKH 149
Cdd:PRK12430 196 TSFTRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFDKIYKDAYLPFSQEKINMDDAILKGAMPLKKFMLNQ 275

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330 150 TYKHDLKMMLKVRGEELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPF 229
Cdd:PRK12430 276 TRTPDLELFSKLAHISSYKNKNEIPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPF 355

                        170
                 ....*....|....*
gi 447143330 230 KILVFVYLGGYTKIV 244
Cdd:PRK12430 356 KLMLFVLVDGWQLLI 370
fliP PRK12783
flagellar biosynthesis protein FliP; Reviewed
 41-244 3.08e-30

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 171720  Cd Length: 255  Bit Score: 113.04  E-value: 3.08e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  41 GKEFTSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDV 120
Cdd:PRK12783  42 GNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEG 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330 121 WDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPK--DLKDLSLFTLVPSFTLTQIQKGLLTGMFIY 198
Cdd:PRK12783 122 VKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQTFTDLASRSFPKaeAGEKIDLRILIPAFMISELRRGFEIGFLIV 201

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 447143330 199 LAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244
Cdd:PRK12783 202 LPFLVIDMIVATIVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLV 247
spaP PRK12796
EscR/YscR/HrcR family type III secretion system export apparatus protein;
70-241 2.45e-26

EscR/YscR/HrcR family type III secretion system export apparatus protein;


Pssm-ID: 237209  Cd Length: 221  Bit Score: 101.98  E-value: 2.45e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGqlksDVWDPMTKEKITVSQAAETTAPI------MK 143
Cdd:PRK12796  25 TCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQ----DIYVYFQNEPVDFNNIASVVKFVdeglggYR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330 144 EYMSKHTYKHDLKMMLKVR--------GEELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYL 215
Cdd:PRK12796 101 DYLIKYSDPELVRFFERAQkkrsygdeAEANDHDKDEISLFSLLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLAL 180

                        170       180
                 ....*....|....*....|....*.
gi 447143330 216 GMMMVPPMILSLPFKILVFVYLGGYT 241
Cdd:PRK12796 181 GMMMMSPVTISVPIKLILFVAMDGWT 206
PRK09617 PRK09617
type III secretion system protein; Reviewed
 70-244 3.10e-24

type III secretion system protein; Reviewed


Pssm-ID: 236593  Cd Length: 243  Bit Score: 97.12  E-value: 3.10e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330  70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI-----------TVSQAAETT 138
Cdd:PRK09617  46 TSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVAMYNDAQKGIESNAVprslfsaegaeTVFVAANKS 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447143330 139 APIMKEYMSKHTYKHD----LKMMLKVRGEELPKDLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMY 214
Cdd:PRK09617 126 KEPLRSFLIKNTPKPQiasfYKISQKTFPPEIRDALTPSDFMIIIPAFIMGQLKNAFEIGVLIYLPFFVIDLVTANVLLA 205

                        170       180       190
                 ....*....|....*....|....*....|
gi 447143330 215 LGMMMVPPMILSLPFKILVFVYLGGYTKIV 244
Cdd:PRK09617 206 MGMMMLSPLSISLPLKLLLVVMVDGWTLLL 235
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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