MULTISPECIES: helix-turn-helix transcriptional regulator [Bacillota]
helix-turn-helix transcriptional regulator( domain architecture ID 10787697)
helix-turn-helix (HTH) transcriptional regulator containing a XRE (Xenobiotic Response Element) family HTH domain may act as a transcriptional regulator that controls the expression of genes involved in stress response
List of domain hits
Name | Accession | Description | Interval | E-value | ||
XRE | COG1476 | DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; |
1-64 | 3.08e-24 | ||
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; : Pssm-ID: 441085 [Multi-domain] Cd Length: 68 Bit Score: 85.67 E-value: 3.08e-24
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Name | Accession | Description | Interval | E-value | ||
XRE | COG1476 | DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; |
1-64 | 3.08e-24 | ||
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; Pssm-ID: 441085 [Multi-domain] Cd Length: 68 Bit Score: 85.67 E-value: 3.08e-24
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HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
3-59 | 2.92e-14 | ||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 59.87 E-value: 2.92e-14
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HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
4-59 | 5.57e-14 | ||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 59.07 E-value: 5.57e-14
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HTH_3 | pfam01381 | Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
5-59 | 7.36e-13 | ||
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family. Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 56.39 E-value: 7.36e-13
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PRK04140 | PRK04140 | transcriptional regulator; |
3-66 | 1.05e-09 | ||
transcriptional regulator; Pssm-ID: 235224 [Multi-domain] Cd Length: 317 Bit Score: 51.78 E-value: 1.05e-09
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lysogeny_AimR | NF038310 | AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR ... |
5-64 | 1.87e-03 | ||
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR (arbitrium receptor), is a DNA-binding phage regulatory protein that acts as a receptor for a 6-amino acid signaling peptide cleaved from the C-terminus of AimP. AimR controls expression of AimX, the third member of the quorum sensing-like arbitrium system and an inhibitor of phage lysogeny. Pssm-ID: 468467 Cd Length: 363 Bit Score: 34.43 E-value: 1.87e-03
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antidote_HigA | TIGR02607 | addiction module antidote protein, HigA family; Members of this family form a distinct clade ... |
13-53 | 5.08e-03 | ||
addiction module antidote protein, HigA family; Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other] Pssm-ID: 274228 [Multi-domain] Cd Length: 78 Bit Score: 31.82 E-value: 5.08e-03
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Name | Accession | Description | Interval | E-value | ||
XRE | COG1476 | DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; |
1-64 | 3.08e-24 | ||
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; Pssm-ID: 441085 [Multi-domain] Cd Length: 68 Bit Score: 85.67 E-value: 3.08e-24
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HipB | COG1396 | Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
3-66 | 1.60e-15 | ||
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 63.86 E-value: 1.60e-15
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HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
3-59 | 2.92e-14 | ||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 59.87 E-value: 2.92e-14
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HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
4-59 | 5.57e-14 | ||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 59.07 E-value: 5.57e-14
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HTH_3 | pfam01381 | Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
5-59 | 7.36e-13 | ||
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family. Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 56.39 E-value: 7.36e-13
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aMBF1 | COG1813 | Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ... |
4-58 | 1.54e-11 | ||
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis]; Pssm-ID: 441418 [Multi-domain] Cd Length: 70 Bit Score: 53.40 E-value: 1.54e-11
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AF2118 | COG3620 | Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ... |
5-67 | 5.23e-11 | ||
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription]; Pssm-ID: 442838 [Multi-domain] Cd Length: 95 Bit Score: 52.71 E-value: 5.23e-11
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COG1395 | COG1395 | Predicted transcriptional regulator [Transcription]; |
4-66 | 4.53e-10 | ||
Predicted transcriptional regulator [Transcription]; Pssm-ID: 441005 [Multi-domain] Cd Length: 313 Bit Score: 52.92 E-value: 4.53e-10
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HTH_19 | pfam12844 | Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ... |
4-60 | 4.63e-10 | ||
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains. Pssm-ID: 463728 [Multi-domain] Cd Length: 64 Bit Score: 49.59 E-value: 4.63e-10
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YozG | COG3655 | DNA-binding transcriptional regulator, XRE family [Transcription]; |
1-66 | 4.77e-10 | ||
DNA-binding transcriptional regulator, XRE family [Transcription]; Pssm-ID: 442872 [Multi-domain] Cd Length: 69 Bit Score: 49.76 E-value: 4.77e-10
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PRK04140 | PRK04140 | transcriptional regulator; |
3-66 | 1.05e-09 | ||
transcriptional regulator; Pssm-ID: 235224 [Multi-domain] Cd Length: 317 Bit Score: 51.78 E-value: 1.05e-09
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HTH_26 | pfam13443 | Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to ... |
4-65 | 2.23e-08 | ||
Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to DNA. Pssm-ID: 433211 [Multi-domain] Cd Length: 63 Bit Score: 45.22 E-value: 2.23e-08
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PRK09943 | PRK09943 | HTH-type transcriptional regulator PuuR; |
4-66 | 4.44e-08 | ||
HTH-type transcriptional regulator PuuR; Pssm-ID: 182158 [Multi-domain] Cd Length: 185 Bit Score: 46.71 E-value: 4.44e-08
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PRK09726 | PRK09726 | type II toxin-antitoxin system antitoxin HipB; |
3-48 | 7.77e-07 | ||
type II toxin-antitoxin system antitoxin HipB; Pssm-ID: 182049 Cd Length: 88 Bit Score: 41.89 E-value: 7.77e-07
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HTH_31 | pfam13560 | Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. |
4-59 | 2.12e-05 | ||
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. Pssm-ID: 433309 [Multi-domain] Cd Length: 64 Bit Score: 37.51 E-value: 2.12e-05
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VapI | COG3093 | Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense ... |
13-57 | 3.45e-05 | ||
Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense mechanisms]; Pssm-ID: 442327 [Multi-domain] Cd Length: 87 Bit Score: 37.48 E-value: 3.45e-05
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YiaG | COG2944 | DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription]; |
4-55 | 3.52e-05 | ||
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription]; Pssm-ID: 442187 [Multi-domain] Cd Length: 64 Bit Score: 37.22 E-value: 3.52e-05
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RodZ | COG1426 | Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ... |
4-60 | 6.07e-04 | ||
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 441035 [Multi-domain] Cd Length: 71 Bit Score: 34.01 E-value: 6.07e-04
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lysogeny_AimR | NF038310 | AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR ... |
5-64 | 1.87e-03 | ||
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR (arbitrium receptor), is a DNA-binding phage regulatory protein that acts as a receptor for a 6-amino acid signaling peptide cleaved from the C-terminus of AimP. AimR controls expression of AimX, the third member of the quorum sensing-like arbitrium system and an inhibitor of phage lysogeny. Pssm-ID: 468467 Cd Length: 363 Bit Score: 34.43 E-value: 1.87e-03
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antidote_HigA | TIGR02607 | addiction module antidote protein, HigA family; Members of this family form a distinct clade ... |
13-53 | 5.08e-03 | ||
addiction module antidote protein, HigA family; Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other] Pssm-ID: 274228 [Multi-domain] Cd Length: 78 Bit Score: 31.82 E-value: 5.08e-03
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PRK09706 | PRK09706 | transcriptional repressor DicA; Reviewed |
1-40 | 7.34e-03 | ||
transcriptional repressor DicA; Reviewed Pssm-ID: 182039 [Multi-domain] Cd Length: 135 Bit Score: 32.52 E-value: 7.34e-03
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Blast search parameters | ||||
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