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Conserved domains on  [gi|488223747|ref|WP_002294955|]
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MULTISPECIES: YneF family protein [Enterococcus]

Protein Classification

YneF family protein( domain architecture ID 10007960)

YneF family protein similar to Lactococcus lactis UPF0154 protein YnbE

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
3-71 8.52e-30

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


:

Pssm-ID: 442977  Cd Length: 71  Bit Score: 100.01  E-value: 8.52e-30
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488223747  3 STGIVVLIAIIALLIGAVGGFFLARKYMKDYLEKNPPVNEDMLRSMMMSMGQKPSEKKIRQMMQQMKNQ 71
Cdd:COG3763   2 STWLWILIIIVALLAGLAGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQ 70
 
Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
3-71 8.52e-30

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


Pssm-ID: 442977  Cd Length: 71  Bit Score: 100.01  E-value: 8.52e-30
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488223747  3 STGIVVLIAIIALLIGAVGGFFLARKYMKDYLEKNPPVNEDMLRSMMMSMGQKPSEKKIRQMMQQMKNQ 71
Cdd:COG3763   2 STWLWILIIIVALLAGLAGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQ 70
UPF0154 pfam03672
Uncharacterized protein family (UPF0154); This family contains a set of short bacterial ...
 11-70 3.52e-25

Uncharacterized protein family (UPF0154); This family contains a set of short bacterial proteins of unknown function.


Pssm-ID: 427437  Cd Length: 60  Bit Score: 88.04  E-value: 3.52e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 488223747  11 AIIALLIGAVGGFFLARKYMKDYLEKNPPVNEDMLRSMMMSMGQKPSEKKIRQMMQQMKN 70
Cdd:pfam03672  1 IILALIVGLVGGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKK 60
PRK01844 PRK01844
YneF family protein;
6-73 5.59e-19

YneF family protein;


Pssm-ID: 100947  Cd Length: 72  Bit Score: 72.74  E-value: 5.59e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488223747  6 IVVLIAIIALLIGAVGGFFLARKYMKDYLEKNPPVNEDMLRSMMMSMGQKPSEKKIRQMMQQMKNQGK 73
Cdd:PRK01844  5 LGILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNKQQM 72
 
Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
3-71 8.52e-30

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


Pssm-ID: 442977  Cd Length: 71  Bit Score: 100.01  E-value: 8.52e-30
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 488223747  3 STGIVVLIAIIALLIGAVGGFFLARKYMKDYLEKNPPVNEDMLRSMMMSMGQKPSEKKIRQMMQQMKNQ 71
Cdd:COG3763   2 STWLWILIIIVALLAGLAGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQ 70
UPF0154 pfam03672
Uncharacterized protein family (UPF0154); This family contains a set of short bacterial ...
 11-70 3.52e-25

Uncharacterized protein family (UPF0154); This family contains a set of short bacterial proteins of unknown function.


Pssm-ID: 427437  Cd Length: 60  Bit Score: 88.04  E-value: 3.52e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 488223747  11 AIIALLIGAVGGFFLARKYMKDYLEKNPPVNEDMLRSMMMSMGQKPSEKKIRQMMQQMKN 70
Cdd:pfam03672  1 IILALIVGLVGGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKK 60
PRK01844 PRK01844
YneF family protein;
6-73 5.59e-19

YneF family protein;


Pssm-ID: 100947  Cd Length: 72  Bit Score: 72.74  E-value: 5.59e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 488223747  6 IVVLIAIIALLIGAVGGFFLARKYMKDYLEKNPPVNEDMLRSMMMSMGQKPSEKKIRQMMQQMKNQGK 73
Cdd:PRK01844  5 LGILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNKQQM 72
PRK00523 PRK00523
hypothetical protein; Provisional
 1-71 9.45e-17

hypothetical protein; Provisional


Pssm-ID: 179056  Cd Length: 72  Bit Score: 67.04  E-value: 9.45e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 488223747  1 MLSTGIVVLIAIIALLIGAVGGFFLARKYMKDYLEKNPPVNEDMLRSMMMSMGQKPSEKKIRQMMQQMKNQ 71
Cdd:PRK00523  1 GLAIGLALGLGIPLLIVGGIIGYFVSKKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSVKNA 71
TVP38 COG0398
Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 ...
 8-36 4.22e-03

Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family [Function unknown];


Pssm-ID: 440167 [Multi-domain]  Cd Length: 209  Bit Score: 33.67  E-value: 4.22e-03
                         10        20
                 ....*....|....*....|....*....
gi 488223747   8 VLIAIIALLIGAVGGFFLARKYMKDYLEK 36
Cdd:COG0398   74 TLLSLIGATLGALLAFLLARYLGRDFVER 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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