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Conserved domains on  [gi|488614666|ref|WP_002551515|]
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MULTISPECIES: 50S ribosomal protein L33 [Pseudomonas]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011480)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803|11733066

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-49 1.39e-22

50S ribosomal protein L33; Validated


:

Pssm-ID: 179075  Cd Length: 53  Bit Score: 80.24  E-value: 1.39e-22
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488614666  1 MRELIRLVSSAGTGHFYTTDKNKRTTPDKIEIKKFDPVVRKHVIYKEGK 49
Cdd:PRK00595  5 MRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-49 1.39e-22

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 80.24  E-value: 1.39e-22
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488614666  1 MRELIRLVSSAGTGHFYTTDKNKRTTPDKIEIKKFDPVVRKHVIYKEGK 49
Cdd:PRK00595  5 MRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-49 6.38e-21

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 75.96  E-value: 6.38e-21
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488614666  1 MRELIRLVSSAGTGHFYTTDKNKRTTPDKIEIKKFDPVVRKHVIYKEGK 49
Cdd:COG0267   4 MREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
4-49 7.56e-18

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 67.84  E-value: 7.56e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 488614666   4 LIRLVSSAGTGHFYTTDKNKRTTPDKIEIKKFDPVVRKHVIYKEGK 49
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-49 1.64e-17

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 67.48  E-value: 1.64e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 488614666   2 RELIRLVSSAGTGHFYTTDKNKRTTPDKIEIKKFDPVVRKHVIYKEGK 49
Cdd:TIGR01023  7 RELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-49 1.39e-22

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 80.24  E-value: 1.39e-22
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488614666  1 MRELIRLVSSAGTGHFYTTDKNKRTTPDKIEIKKFDPVVRKHVIYKEGK 49
Cdd:PRK00595  5 MRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-49 6.38e-21

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 75.96  E-value: 6.38e-21
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488614666  1 MRELIRLVSSAGTGHFYTTDKNKRTTPDKIEIKKFDPVVRKHVIYKEGK 49
Cdd:COG0267   4 MREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
4-49 7.56e-18

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 67.84  E-value: 7.56e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 488614666   4 LIRLVSSAGTGHFYTTDKNKRTTPDKIEIKKFDPVVRKHVIYKEGK 49
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-49 1.64e-17

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 67.48  E-value: 1.64e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 488614666   2 RELIRLVSSAGTGHFYTTDKNKRTTPDKIEIKKFDPVVRKHVIYKEGK 49
Cdd:TIGR01023  7 RELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
rpmG PRK00504
50S ribosomal protein L33; Validated
 1-49 7.01e-08

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 42.98  E-value: 7.01e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 488614666  1 MRELIRLVSSAGTGHFYTTDKNKRTTPDKIEIKKFDPVVRKHVIYKEGK 49
Cdd:PRK00504  2 MRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
rpl33 CHL00104
ribosomal protein L33
 17-49 1.40e-07

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 42.65  E-value: 1.40e-07
                        10        20        30
                ....*....|....*....|....*....|...
gi 488614666 17 YTTDKNKRTTPDKIEIKKFDPVVRKHVIYKEGK 49
Cdd:CHL00104 33 YITQKNRHNTPNRLELKKFCPYCYKHTIHKEIK 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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