|
Name |
Accession |
Description |
Interval |
E-value |
| rpsD |
PRK05327 |
30S ribosomal protein S4; Validated |
1-201 |
2.62e-121 |
|
30S ribosomal protein S4; Validated
Pssm-ID: 235411 [Multi-domain] Cd Length: 203 Bit Score: 341.70 E-value: 2.62e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 1 MSRYTGPSWKQSRRLGLSLTGTGKELARRNYVPGQHGPN-NRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKIK 79
Cdd:PRK05327 1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRKYPPGQHGQRrRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 80 eGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVEAT 159
Cdd:PRK05327 81 -GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 489072133 160 --LGRPAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNK 201
Cdd:PRK05327 160 erRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
|
|
| RpsD |
COG0522 |
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ... |
1-201 |
1.65e-117 |
|
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit
Pssm-ID: 440288 [Multi-domain] Cd Length: 204 Bit Score: 332.04 E-value: 1.65e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 1 MSRYTGPSWKQSRRLGLSLTGTGKE---LARRNYVPGQHGpNNRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATK 77
Cdd:COG0522 1 MARYTGPKCKLCRREGVKLFLKGERkcaLERRPYPPGQHG-QRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEEAAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 78 IKEGTlGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE 157
Cdd:COG0522 80 RKGNT-GENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALE 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489072133 158 ATLGR--PAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNK 201
Cdd:COG0522 159 SAEQRgvPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
|
|
| rpsD_bact |
TIGR01017 |
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ... |
3-201 |
2.40e-93 |
|
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 200066 [Multi-domain] Cd Length: 200 Bit Score: 270.71 E-value: 2.40e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 3 RYTGPSWKQSRRLGLSLTGTGKEL-ARRNYVPGQHGpNNRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKIKeG 81
Cdd:TIGR01017 1 RYTGPKFKLSRRLGVNLFGKSRKLlLKRKYPPGQHG-QRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLK-G 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 82 TLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVEATLG 161
Cdd:TIGR01017 79 NTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNGQ 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489072133 162 R--PAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNK 201
Cdd:TIGR01017 159 RniPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
|
|
| Ribosomal_S4 |
pfam00163 |
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ... |
3-92 |
3.86e-26 |
|
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.
Pssm-ID: 459696 Cd Length: 96 Bit Score: 96.46 E-value: 3.86e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 3 RYTGPSWKQSRRLGLSLTGTGKELA-------RRNY--VPGQHGpnNRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFV 73
Cdd:pfam00163 1 RYKGPEQKLLRRVGFKLWKKGRCHRelkvaqnRREYpkYPGQHG--KIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78
|
90
....*....|....*....
gi 489072133 74 QATKIKeGTLGFNFMVLLE 92
Cdd:pfam00163 79 MGLKLK-GVTGENLLQLLE 96
|
|
| S4 |
cd00165 |
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ... |
93-154 |
3.03e-22 |
|
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Pssm-ID: 238095 [Multi-domain] Cd Length: 70 Bit Score: 85.38 E-value: 3.03e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489072133 93 RRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILE 154
Cdd:cd00165 1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYE 62
|
|
| S4 |
smart00363 |
S4 RNA-binding domain; |
93-150 |
1.07e-19 |
|
S4 RNA-binding domain;
Pssm-ID: 214638 [Multi-domain] Cd Length: 60 Bit Score: 78.79 E-value: 1.07e-19
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 489072133 93 RRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVP 150
Cdd:smart00363 1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELKRL 58
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| rpsD |
PRK05327 |
30S ribosomal protein S4; Validated |
1-201 |
2.62e-121 |
|
30S ribosomal protein S4; Validated
Pssm-ID: 235411 [Multi-domain] Cd Length: 203 Bit Score: 341.70 E-value: 2.62e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 1 MSRYTGPSWKQSRRLGLSLTGTGKELARRNYVPGQHGPN-NRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKIK 79
Cdd:PRK05327 1 MARYTGPKCKLSRRLGVDLFKSGKRCLKRKYPPGQHGQRrRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARRK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 80 eGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVEAT 159
Cdd:PRK05327 81 -GNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALELA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 489072133 160 --LGRPAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNK 201
Cdd:PRK05327 160 erRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
|
|
| RpsD |
COG0522 |
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ... |
1-201 |
1.65e-117 |
|
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit
Pssm-ID: 440288 [Multi-domain] Cd Length: 204 Bit Score: 332.04 E-value: 1.65e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 1 MSRYTGPSWKQSRRLGLSLTGTGKE---LARRNYVPGQHGpNNRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATK 77
Cdd:COG0522 1 MARYTGPKCKLCRREGVKLFLKGERkcaLERRPYPPGQHG-QRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEEAAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 78 IKEGTlGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVE 157
Cdd:COG0522 80 RKGNT-GENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEALE 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489072133 158 ATLGR--PAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNK 201
Cdd:COG0522 159 SAEQRgvPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
|
|
| rpsD_bact |
TIGR01017 |
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ... |
3-201 |
2.40e-93 |
|
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 200066 [Multi-domain] Cd Length: 200 Bit Score: 270.71 E-value: 2.40e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 3 RYTGPSWKQSRRLGLSLTGTGKEL-ARRNYVPGQHGpNNRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKIKeG 81
Cdd:TIGR01017 1 RYTGPKFKLSRRLGVNLFGKSRKLlLKRKYPPGQHG-QRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLK-G 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 82 TLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVEATLG 161
Cdd:TIGR01017 79 NTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNGQ 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489072133 162 R--PAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNK 201
Cdd:TIGR01017 159 RniPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
|
|
| rps4 |
CHL00113 |
ribosomal protein S4; Reviewed |
1-199 |
6.37e-62 |
|
ribosomal protein S4; Reviewed
Pssm-ID: 177038 [Multi-domain] Cd Length: 201 Bit Score: 191.20 E-value: 6.37e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 1 MSRYTGPSWKQSRRLGlSLTGtgkeLARRNYVPGQHGPNNRS--KLSEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKI 78
Cdd:CHL00113 1 MSRYRGPRLKIIRRLG-ALPG----LTSKTPRPGSDLRNQSRsgKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 79 KEGTlGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILEAVEA 158
Cdd:CHL00113 76 KGST-GQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLES 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489072133 159 TLGR--PAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFY 199
Cdd:CHL00113 155 SPREelPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYY 197
|
|
| Ribosomal_S4 |
pfam00163 |
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ... |
3-92 |
3.86e-26 |
|
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.
Pssm-ID: 459696 Cd Length: 96 Bit Score: 96.46 E-value: 3.86e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 3 RYTGPSWKQSRRLGLSLTGTGKELA-------RRNY--VPGQHGpnNRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFV 73
Cdd:pfam00163 1 RYKGPEQKLLRRVGFKLWKKGRCHRelkvaqnRREYpkYPGQHG--KIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78
|
90
....*....|....*....
gi 489072133 74 QATKIKeGTLGFNFMVLLE 92
Cdd:pfam00163 79 MGLKLK-GVTGENLLQLLE 96
|
|
| S4 |
cd00165 |
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ... |
93-154 |
3.03e-22 |
|
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Pssm-ID: 238095 [Multi-domain] Cd Length: 70 Bit Score: 85.38 E-value: 3.03e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489072133 93 RRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVPAILE 154
Cdd:cd00165 1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYE 62
|
|
| S4 |
smart00363 |
S4 RNA-binding domain; |
93-150 |
1.07e-19 |
|
S4 RNA-binding domain;
Pssm-ID: 214638 [Multi-domain] Cd Length: 60 Bit Score: 78.79 E-value: 1.07e-19
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 489072133 93 RRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVP 150
Cdd:smart00363 1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELKRL 58
|
|
| S4 |
pfam01479 |
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ... |
93-140 |
1.88e-19 |
|
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.
Pssm-ID: 396182 [Multi-domain] Cd Length: 48 Bit Score: 77.53 E-value: 1.88e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 489072133 93 RRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVI 140
Cdd:pfam01479 1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
|
|
| rps4p |
PRK04051 |
30S ribosomal protein S4P; Validated |
90-135 |
2.12e-19 |
|
30S ribosomal protein S4P; Validated
Pssm-ID: 179730 [Multi-domain] Cd Length: 177 Bit Score: 81.07 E-value: 2.12e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 489072133 90 LLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVD 135
Cdd:PRK04051 100 ILERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSYLVS 145
|
|
| uS4_arch |
TIGR01018 |
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ... |
83-134 |
1.77e-14 |
|
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 273397 [Multi-domain] Cd Length: 162 Bit Score: 67.84 E-value: 1.77e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 489072133 83 LGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRV 134
Cdd:TIGR01018 94 LGLTVEDFLERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSYIV 145
|
|
| YqxC |
COG1189 |
Predicted rRNA methylase YqxC, contains S4 and FtsJ domains [Translation, ribosomal structure ... |
94-177 |
2.16e-10 |
|
Predicted rRNA methylase YqxC, contains S4 and FtsJ domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440802 [Multi-domain] Cd Length: 248 Bit Score: 58.15 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489072133 94 RLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKvpaileaveatlgrpaFVSFDAEKL 173
Cdd:COG1189 2 RLDVLLVERGLAESREKAQRLIMAGRVLVNGQVVDKPGTKVPEDAEIEVKGEELP----------------YVSRGGLKL 65
|
....
gi 489072133 174 EGSL 177
Cdd:COG1189 66 EGAL 69
|
|
| RsuA |
COG1187 |
Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605 [Translation, ... |
94-151 |
3.00e-07 |
|
Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605 [Translation, ribosomal structure and biogenesis]; Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605 is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440800 [Multi-domain] Cd Length: 226 Bit Score: 48.88 E-value: 3.00e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 489072133 94 RLDNVVYRLGLATtRRQARQFVNHGHILVDGKRVDIPSYRVDPGQVISVREKSMKVPA 151
Cdd:COG1187 4 RLQKFLANAGVGS-RREAEELIEAGRVTVNGKVVTELGTKVDPGDEVTVDGKPLKLPE 60
|
|
| PTZ00155 |
PTZ00155 |
40S ribosomal protein S9; Provisional |
83-135 |
4.23e-07 |
|
40S ribosomal protein S9; Provisional
Pssm-ID: 185484 [Multi-domain] Cd Length: 181 Bit Score: 48.15 E-value: 4.23e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 489072133 83 LGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSY--RVD 135
Cdd:PTZ00155 97 LGLTVEKLLERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSFlvRVD 151
|
|
| PLN00189 |
PLN00189 |
40S ribosomal protein S9; Provisional |
90-134 |
4.83e-06 |
|
40S ribosomal protein S9; Provisional
Pssm-ID: 177783 [Multi-domain] Cd Length: 194 Bit Score: 45.13 E-value: 4.83e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 489072133 90 LLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRV 134
Cdd:PLN00189 106 FLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSFMV 150
|
|
| HslR |
COG1188 |
Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain [Translation, ribosomal ... |
107-143 |
6.52e-04 |
|
Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440801 Cd Length: 120 Bit Score: 37.89 E-value: 6.52e-04
10 20 30
....*....|....*....|....*....|....*..
gi 489072133 107 TRRQARQFVNHGHILVDGKRVDiPSYRVDPGQVISVR 143
Cdd:COG1188 19 TRSLAAEACDGGRVRVNGQRAK-PSREVKVGDVLTIR 54
|
|
| PRK04313 |
PRK04313 |
30S ribosomal protein S4e; Validated |
102-148 |
2.73e-03 |
|
30S ribosomal protein S4e; Validated
Pssm-ID: 179820 [Multi-domain] Cd Length: 237 Bit Score: 37.50 E-value: 2.73e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489072133 102 LGLATTRRQARQFVNHGHILVDGK-RVD------------IP----SYRVDPGQV-------ISVREKSMK 148
Cdd:PRK04313 48 LGYADTAREAKKIINEGKVLVDGRvRKDykfpvglmdvisIPetgeYYRVLPDEKgrlvlipISEEEAKLK 118
|
|
| |
