|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
7-314 |
2.63e-98 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 292.40 E-value: 2.63e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 7 KLNLRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFATG 86
Cdd:COG1172 13 RRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 87 -GTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFNIPIPV 165
Cdd:COG1172 93 lGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLGIPVPV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 166 VIFFIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMD 245
Cdd:COG1172 173 LIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELD 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489531799 246 AIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSKKKLA 314
Cdd:COG1172 253 AIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRA 321
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
46-306 |
7.04e-78 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 238.46 E-value: 7.04e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 46 SSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFAT-GGTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATM 124
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVnAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 125 AMVTIVRGLLLMLTGGYPITENIP-ILDYIGNGYLFNIPIPVVIFFIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGI 203
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPlFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 204 NVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNL 283
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 489531799 284 LGIDVYFQYIFKGLIILAAVGFD 306
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
16-310 |
1.50e-72 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 226.52 E-value: 1.50e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 16 LLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFATGGTNLFASMF 95
Cdd:PRK09512 22 LIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 96 LGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPI----TENIPILDYIGNGYLFNIPIPVVIFFIV 171
Cdd:PRK09512 102 AALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPIntgfTDNADLFGWFGIGRPLGIPTPVWIMAIV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 172 VLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIASVV 251
Cdd:PRK09512 182 FLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVV 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 489531799 252 IGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSK 310
Cdd:PRK09512 262 LGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
9-312 |
1.76e-51 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 173.80 E-value: 1.76e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 9 NLRDYGVLLGFLALCIAISIATPS-FLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAIT-MKFATG 86
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAaVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 87 GTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFNI----- 161
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLfggtg 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 162 -----------------------------------PIP-----------VVIFFIVVLASF------------------I 177
Cdd:NF040906 161 lhlltlllgvlaaaalvwsqlrgrrrrikyglevePMAlfiaklvliaaAILFFTYLLASYrglpnvliilgvlilvysF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 178 VLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIASVVIGGTSV 257
Cdd:NF040906 241 VTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASA 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 489531799 258 AGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSKKK 312
Cdd:NF040906 321 SGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
38-303 |
2.96e-23 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 96.56 E-value: 2.96e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 38 NILNLLRQSSIIGIISAGMTFVI-ISGNFDISVGAVAALAGAIT-MKFATGGTNLFASMFLGVAICAVIGLINGIVVAKI 115
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAaMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 116 NVPSLIATMAMVTIVRGLLLMLTGGYPITENIP--ILDYIGNGYLFNIPIPVVIFFIVVLASFIV---LNKTKFGRYVYS 190
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTsgITGPSGFPGAFLSFAFAFIFLLALLLVLALwllLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 191 VGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATA-IAGEGYDMDAIASVVIGGTsvaggsGSVLKTVI 269
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGVVI 234
|
250 260 270
....*....|....*....|....*....|....*
gi 489531799 270 GVLLMSVINNSF-NLLGIDVYFQYIFKGLIILAAV 303
Cdd:pfam02653 235 GSLIIGLVQSLGlGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
7-314 |
2.63e-98 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 292.40 E-value: 2.63e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 7 KLNLRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFATG 86
Cdd:COG1172 13 RRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 87 -GTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFNIPIPV 165
Cdd:COG1172 93 lGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLGIPVPV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 166 VIFFIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMD 245
Cdd:COG1172 173 LIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELD 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489531799 246 AIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSKKKLA 314
Cdd:COG1172 253 AIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRA 321
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
46-306 |
7.04e-78 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 238.46 E-value: 7.04e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 46 SSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFAT-GGTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATM 124
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVnAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 125 AMVTIVRGLLLMLTGGYPITENIP-ILDYIGNGYLFNIPIPVVIFFIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGI 203
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPlFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 204 NVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNL 283
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 489531799 284 LGIDVYFQYIFKGLIILAAVGFD 306
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
7-312 |
9.43e-77 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 239.63 E-value: 9.43e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 7 KLNLRDYGVLLGFLALCIAISIAT-PSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFAT 85
Cdd:COG4214 19 GGDLRSLGMIIALVVIWIVFQILTgGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 86 G-GTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYL------ 158
Cdd:COG4214 99 NwGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGFLpdilgt 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 159 ------------------------------------------------------FN----IPIPVVIFFIVVLASFIVLN 180
Cdd:COG4214 179 lswvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavylLNsyrgIPIVVLILLVLVVVYTFVLT 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 181 KTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIASVVIGGTSVAGG 260
Cdd:COG4214 259 RTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGG 338
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 489531799 261 SGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSKKK 312
Cdd:COG4214 339 VGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRR 390
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
16-310 |
1.50e-72 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 226.52 E-value: 1.50e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 16 LLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFATGGTNLFASMF 95
Cdd:PRK09512 22 LIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 96 LGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPI----TENIPILDYIGNGYLFNIPIPVVIFFIV 171
Cdd:PRK09512 102 AALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPIntgfTDNADLFGWFGIGRPLGIPTPVWIMAIV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 172 VLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIASVV 251
Cdd:PRK09512 182 FLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVV 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 489531799 252 IGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSK 310
Cdd:PRK09512 262 LGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
10-316 |
4.31e-69 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 218.26 E-value: 4.31e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 10 LRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFATGGTN 89
Cdd:COG4158 27 LQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLPGL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 90 LFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFNIPIPVVIFF 169
Cdd:COG4158 107 GLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFAWIGNGYLLGIPWLVVIAL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 170 IVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAI-AGEGYDMDAIA 248
Cdd:COG4158 187 AVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLqLGQGYELDAIA 266
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489531799 249 SVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSKKKLASR 316
Cdd:COG4158 267 AVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQRGSART 334
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
10-312 |
3.84e-63 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 202.82 E-value: 3.84e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 10 LRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAIT--------- 80
Cdd:COG4211 13 LLNNAIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAAVISasllqsgdy 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 81 ---MKFATGGTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLT---GGYPITENIPILDYIG 154
Cdd:COG4211 93 agkFFPNLPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTdrpGAQPIGGLDESFTNFA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 155 NGYL----FNIPIPVVIFFIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGR 230
Cdd:COG4211 173 QGSIniggFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGALYGFAGFLEAAR 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 231 LGTATAIAGEGYDMDAIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDS--Y 308
Cdd:COG4211 253 TGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLIIIAAVALDIrkY 332
|
....
gi 489531799 309 SKKK 312
Cdd:COG4211 333 LKKK 336
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
10-316 |
2.54e-59 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 192.97 E-value: 2.54e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 10 LRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFATGGTN 89
Cdd:PRK11285 27 WDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATES 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 90 LFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFNIPIPVVIFF 169
Cdd:PRK11285 107 LWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYANFFGVPAPIWLTV 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 170 IVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIAS 249
Cdd:PRK11285 187 ACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISA 266
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489531799 250 VVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSKKKLASR 316
Cdd:PRK11285 267 CVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQRAKRTV 333
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
1-312 |
5.11e-55 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 182.19 E-value: 5.11e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 1 MKKAFEKLNLRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAIT 80
Cdd:PRK09478 4 LNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 81 MKFATGGTN------------LFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLT---GGYPITE 145
Cdd:PRK09478 84 ATLLQSMDNankvfpelatmpIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYdfvGASPISG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 146 NIPILDYIGNGYL----FNIPIPVVIFFIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAG 221
Cdd:PRK09478 164 FDSGFSTFAQGFValgsFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 222 IAGIVLTGRLGTATAIAGEGYDMDAIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILA 301
Cdd:PRK09478 244 FGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIF 323
|
330
....*....|...
gi 489531799 302 AVGFDS--YSKKK 312
Cdd:PRK09478 324 AVALDSlkYARKK 336
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
9-312 |
1.76e-51 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 173.80 E-value: 1.76e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 9 NLRDYGVLLGFLALCIAISIATPS-FLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAIT-MKFATG 86
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAaVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 87 GTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFNI----- 161
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLfggtg 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 162 -----------------------------------PIP-----------VVIFFIVVLASF------------------I 177
Cdd:NF040906 161 lhlltlllgvlaaaalvwsqlrgrrrrikyglevePMAlfiaklvliaaAILFFTYLLASYrglpnvliilgvlilvysF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 178 VLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIASVVIGGTSV 257
Cdd:NF040906 241 VTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASA 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 489531799 258 AGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFDSYSKKK 312
Cdd:NF040906 321 SGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
17-306 |
1.05e-44 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 154.54 E-value: 1.05e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 17 LGFLALCIAI--SIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFATGGTN-LFAS 93
Cdd:PRK09699 15 FFILAIIVAIfgSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDpFLAA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 94 MFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITE-NIPILDYIGnGYLFNIPIPVVIFFIVV 172
Cdd:PRK09699 95 LIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGfSFDFVNFFA-ASVIGIPVPVIFSLIVA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 173 LASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIASVVI 252
Cdd:PRK09699 174 LILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAII 253
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 489531799 253 GGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFD 306
Cdd:PRK09699 254 GGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
8-306 |
1.96e-34 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 128.31 E-value: 1.96e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 8 LNLRDYGVLLGFLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFATGG 87
Cdd:PRK15432 6 QNNRELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 88 TNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYLFNIPIPVVI 167
Cdd:PRK15432 86 YSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISPIGWL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 168 FFIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAI 247
Cdd:PRK15432 166 TLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAI 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 489531799 248 ASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIDVYFQYIFKGLIILAAVGFD 306
Cdd:PRK15432 246 AACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
19-277 |
5.37e-34 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 126.61 E-value: 5.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 19 FLALCIAISIATPSFLGKQNILNLLRQSSIIGIISAGMTFVIISGNFDISVGAVAALAGAITMKFATG-GTNLFASMFLG 97
Cdd:PRK11618 15 FVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDyGWSPLLAFPLV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 98 VAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGL-LLMLTGGYPITEniPILDYIGNgylFNIPIP--------VVIF 168
Cdd:PRK11618 95 LVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVsFLVSEESIPINH--PFYDTLSS---LAWKLPgggrlsamALIM 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 169 FIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIA 248
Cdd:PRK11618 170 LAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIA 249
|
250 260
....*....|....*....|....*....
gi 489531799 249 SVVIGGTSVAGGSGSVLKTVIGVLLMSVI 277
Cdd:PRK11618 250 AVVIGGTLLTGGVGTVLGTLFGVLIQGLI 278
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
38-303 |
2.96e-23 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 96.56 E-value: 2.96e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 38 NILNLLRQSSIIGIISAGMTFVI-ISGNFDISVGAVAALAGAIT-MKFATGGTNLFASMFLGVAICAVIGLINGIVVAKI 115
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAaMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 116 NVPSLIATMAMVTIVRGLLLMLTGGYPITENIP--ILDYIGNGYLFNIPIPVVIFFIVVLASFIV---LNKTKFGRYVYS 190
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEGGTsgITGPSGFPGAFLSFAFAFIFLLALLLVLALwllLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 191 VGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATA-IAGEGYDMDAIASVVIGGTsvaggsGSVLKTVI 269
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGVVI 234
|
250 260 270
....*....|....*....|....*....|....*
gi 489531799 270 GVLLMSVINNSF-NLLGIDVYFQYIFKGLIILAAV 303
Cdd:pfam02653 235 GSLIIGLVQSLGlGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
46-303 |
5.39e-21 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 90.41 E-value: 5.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 46 SSIIGIISAGMTFVI-ISGNFDISVGAVAALAGAITMKFATGGTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATM 124
Cdd:cd06574 1 GLIYAILALGVYIVFrILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 125 AMVTIVRGLLLMLTGGYPITE-----NIPILDYIGNGYLFNIPIPVVIFFIVVLASFIVLNKTKFGRYVYSVGGNQEASK 199
Cdd:cd06574 81 LIMIGLYSINLRIMGGPNIPLgtrdtLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMAR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 200 LNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIASVVIGGTSVAG--GSGSVLKTVIGVLLMSVI 277
Cdd:cd06574 161 SLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRrtIKASILGVIIGAILYRIA 240
|
250 260
....*....|....*....|....*.
gi 489531799 278 NNSFNLLGIDVYFQYIFKGLIILAAV 303
Cdd:cd06574 241 LALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
49-304 |
6.32e-21 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 91.43 E-value: 6.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 49 IGIISAGMTFVIISGNFDISVGAVAALAGAITMKFATGGTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVT 128
Cdd:PRK15038 45 IGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLY 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 129 IVRGLLLMLTG-----GYPITENIPI-LDYIGNGYLFNIPIPVVIFFIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNG 202
Cdd:PRK15038 125 LFGGSALLLSGmagatGYEGIGGFPMaFTDFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSA 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 203 INVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMDAIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFN 282
Cdd:PRK15038 205 IPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQ 284
|
250 260
....*....|....*....|...
gi 489531799 283 LLGIDVYFQYIFKG-LIILAAVG 304
Cdd:PRK15038 285 MAGVPNQISSALSGaLLIVVVVG 307
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
86-305 |
1.09e-14 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 72.48 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 86 GGTNLFASMFLGVAICAVIGLINGIVVAKINVPSL-IATMAMVTIVRGLLL---MLTGGYPITENIPILDYIGNGYLFNI 161
Cdd:cd06581 43 LGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaIATLAFAEIVRLLALnwsSLTGGSNGLSGIPPPLLGGLLLSSPL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 162 PIPVVIFFIVVLASFIVLN--KTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAiag 239
Cdd:cd06581 123 AFYYLVLAVLLLVLLLLRRlvRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSP--- 199
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489531799 240 EGYDMDAIASVVIGgtSVAGGSGSVLKTVIGVLLMSVINNSFNLLGIdvYFQYIFKGLIILAAVGF 305
Cdd:cd06581 200 ESFGFALSIELLLM--VVLGGLGSLLGPVLGAALLVLLPELLRSLGP--GLRLLVFGLLLILVVLF 261
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
87-303 |
3.64e-14 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 71.27 E-value: 3.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 87 GTNLFASMFLGVAICAVIGLINGIVVAKINVPSL-IATMAMVTIVRGLLL---MLTGGYPITENIPILDYIGNGYLFNIP 162
Cdd:COG4177 54 GLPFWLALLLAGLVAALLGLLIGLPALRLRGDYLaIATLAFAEIVRLLALnleSLTGGADGLSGIPRPTLFGLDLGSPLA 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 163 IPVVIFFIVVLASFIVLN--KTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAiage 240
Cdd:COG4177 134 FYYLVLALLVLVLLLLRRlvRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSP---- 209
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489531799 241 gYDMDAIASVVIGGTSVAGGSGSVLKTVIGVLLMSVINNSFNLLGidvYFQYIFKGLIILAAV 303
Cdd:COG4177 210 -ESFSFLLSIEILLMVVLGGLGSLLGPVLGAVLLVLLPELLRSLP---EYRLLIFGLLLILVV 268
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
79-316 |
1.84e-13 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 70.15 E-value: 1.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 79 ITMKFATGGTNLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLML--------TGGYPITENIP-- 148
Cdd:COG4603 105 LALPGLPGPLHLPLALLAGALAGALWAAIPGLLKARFGVNEVITTLMLNYIALYLVNYLvrgplrdpGSGFPQTPPIPes 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 149 -ILDYIGNGYLFNIPIPVVIffIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIV- 226
Cdd:COG4603 185 aRLPRLLPGTRLHLGLLIAL--LAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVe 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 227 LTGRLGTATAIAGEGYDMDAIASVVIGGTSVAGgsgsvlkTVIGVLLMSVINNSFNLL----GIDVYFQYIFKGLIILAA 302
Cdd:COG4603 263 VLGVQGRLTPGFSPGYGFTGIAVALLGRNNPLG-------IILAALLFGALYVGGDAMqralGVPSEIVDVIQGLIILFV 335
|
250
....*....|....
gi 489531799 303 VGFDSYSKKKLASR 316
Cdd:COG4603 336 LAADFLIRYRLRRR 349
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
83-277 |
2.66e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 62.83 E-value: 2.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 83 FATGGTNLFASMFLGVAICAVIGLINGIVV----AKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIGNGYL 158
Cdd:cd06582 44 LVALGLPFWLALLLALLVAALLGVLLERLVlrplRGAPLLTLLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 159 FNIPIPVVIFFIVVLASFI----VLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTA 234
Cdd:cd06582 124 VTIPPYRLFIIAVALVLLAalylFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVS 203
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489531799 235 TAIaGEGYDMDAIASVVIGGTsvaggsGSVLKTVIGVLLMSVI 277
Cdd:cd06582 204 PTM-GLLLLLKAFAAVVLGGL------GSIPGAVVGGLLLGLA 239
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
87-279 |
1.61e-10 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 60.85 E-value: 1.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 87 GTNLFASMFLGVAICAVIGLINGIVV-----AKINVPSLIATMAMVTIVRGLLLMLTGGYPITENIPILDYIgngYLFNI 161
Cdd:COG0559 58 GLPLWLALLLAVLVAALLGVLLERLVirplrGAPPLALLLATIGLSLVLQGLVLLIFGADPRSFPALLSGSV---ELGGV 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 162 PIPVVIFFIVVLASFIV------LNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGtAT 235
Cdd:COG0559 135 SIPAYRLFIIVVALVLLaalwlfLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYS-VS 213
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 489531799 236 AIAGEGYDMDAIASVVIGGTsvaggsGSVLKTVIGVLLMSVINN 279
Cdd:COG0559 214 PTMGFLLGLKAFAAVVLGGL------GSIPGAVVGGLLLGLAES 251
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
89-302 |
7.86e-10 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 58.22 E-value: 7.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 89 NLFASMFLGVAICAVIGLINGIVVAKINVPSLIATMAMVTIVRGLLLMLtggypitenipildyigngylfnipipVVIF 168
Cdd:cd06580 49 SLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLTSYL---------------------------LLLA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 169 FIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVL-TGRLGTATAIAGEGYDMDAI 247
Cdd:cd06580 102 LLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLvLGVQGRFTEGMSAGYGFIAI 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489531799 248 ASVVIGGTSVAGgsgsvlkTVIGVLLMSVINNSFNLL----GIDVYFQYIFKGLIILAA 302
Cdd:cd06580 182 AVALLGRWNPLG-------ILLAALLFGALEAGGIALqrsgGVPSELVQVLPGIIVLFV 233
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
166-276 |
9.65e-03 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 37.21 E-value: 9.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489531799 166 VIFFIVVLASFIVLNKTKFGRYVYSVGGNQEASKLNGINVDSHKVKVFIINAVLAGIAGIVLTGRLGTATAIAGEGYDMD 245
Cdd:PRK10740 162 IVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMK 241
|
90 100 110
....*....|....*....|....*....|.
gi 489531799 246 AIASVVIGGTsvaggsGSVLKTVIGVLLMSV 276
Cdd:PRK10740 242 AFTAAVLGGI------GSIPGAMIGGLILGI 266
|
|
| |
