|
Name |
Accession |
Description |
Interval |
E-value |
| GdpP |
COG3887 |
Cyclic di-AMP phosphodiesterase GdpP, contains GGDEF-like and DHH domains [Signal transduction ... |
11-664 |
0e+00 |
|
Cyclic di-AMP phosphodiesterase GdpP, contains GGDEF-like and DHH domains [Signal transduction mechanisms];
Pssm-ID: 443095 [Multi-domain] Cd Length: 662 Bit Score: 970.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 11 PFFLQNQQLRLLALVIFSLSLIMLVTGYLMNWIFGTVVLILIVMAVVISYNTLIELSSSANEYISDLSYRIKRGEQEALI 90
Cdd:COG3887 2 KKKLKKRKLRPLLLVLLLLLLLLLIILLFYNWIIGLLGLLLLILLLYYNIKAERKRRRELEKYIETLSYRVDKAGKEALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 91 QMPIGVMIFNSDQTIEWINPYLQRYFGDKDVLGYRLEDIEPTLAAT--LNAHLDEPATIRWQDYQFDVRVQQSTN----- 163
Cdd:COG3887 82 ELPIGIVLLDEDGEIEWYNPYFSEIFGDEDLLGKSLEDIFPELNLDklKEEEGEEPFTITIGDRYYRVYYKKVKDeeedl 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 164 -TVYMMDVTKYAELTDQFEDEKLVIGQIFLDNYDEITQSMTDTDISNLNNYVTNELSKWTQMFGMYLKRLDDDHFFLLGY 242
Cdd:COG3887 162 rLLYFFDVTEYEELKKEYEEERPVIGIIFIDNYDEVTQSMDESERSLLNSEVTRKLNDWANEYGGFLKRYSSDRYLAVMN 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 243 ASSLRRVEENKFRILDRIRESTSKQNFPLTLSIGIAYGERNMNNLADLAQSNMDLALGRGGDQVVVKSEDEpARFYGGKT 322
Cdd:COG3887 242 EKILEKLEEDKFSILDEIREITSGNNIPVTLSIGIGYGGDSLAELGELAQSALDLALGRGGDQVVVKDGDK-VRFYGGKT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 323 NPMEKRTRVRARMISQTLQELMNQSDQIFVQGHRQPDMDAVGACLGIRRIAEMNGKQCWIVLDEqnVHSDIQRLLDQLKS 402
Cdd:COG3887 321 NAVEKRTRVRARVIAHALRELIKESDNVFIMGHKNPDMDSIGAAIGVLRIAKMLGKEAYIVLDE--VNPSIDRLMEEIKE 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 403 DENIESAIISPEEALEKATDQSLLIMADHSKPSISMSQALYERLENRVmIIDHHRRGEEFPENPVLVYIEPYASSTCELI 482
Cdd:COG3887 399 EEEYEDLFISPEEALELITKNTLLVVVDTHRPSLVESPELLEKAEKVV-VIDHHRRGEEFIENPVLVYIEPYASSTSELV 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 483 TEMFEYQSHDAEpINKIEATAMLTGIVIDTKSFSLRSGSRTFDAASYLRSAGADSLLVQQFMKENVDSYLQRNHLIETVE 562
Cdd:COG3887 478 TELLQYQPDKIK-LSKLEATALLAGIVVDTKNFTLRTGVRTFEAASYLRRNGADTILVKQLFKEDLDTYIARAELISSAE 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 563 FVNQDMALCVGEDDQVYDPVTAAQAADSLLSMSGVDASFVITRREDGRVGISARSLGEINVQVYMEKLGGGGHLSNAATQ 642
Cdd:COG3887 557 IYRDGIAIAVGPEDIEYSQVIAAQAADELLNIKGIEASFVLTKRSDGKIGISARSLGEINVQVIMEKLGGGGHLTNAGAQ 636
|
650 660
....*....|....*....|..
gi 489739527 643 IEGQSVEAVKQSLIDLLTATDE 664
Cdd:COG3887 637 LKDVTIEEAKEQLKEAIDEYLE 658
|
|
| PRK14538 |
PRK14538 |
putative bifunctional signaling protein/50S ribosomal protein L9; Provisional |
43-659 |
2.03e-109 |
|
putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Pssm-ID: 173004 [Multi-domain] Cd Length: 838 Bit Score: 349.90 E-value: 2.03e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 43 IFGTVVLILIVMAVVISYNTLIELSSSANEYI--SDLSYRIKRGEQEALIQMPIG-VMIFNSDQTIEWINPYLQRYFGDK 119
Cdd:PRK14538 60 FLGKIILAILIISFLLNIKKNAQIKRLQNKLSlwSKLSFHVSQIGEEVLNELPIGiVLIDISSKEIQWLNPYANFILKNP 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 120 DVlGYRLEDIEPTLAATLNA-HLDEPATIRWQDYQFDVRVQQSTNTVYMMDVTKYAELTDQFEDEKLVIGQIFLDNYDEi 198
Cdd:PRK14538 140 EI-NTPLAQINESMAQLLLTsDKIPKTIITLKNQKFECFYKKDLNVFYLFNATEKEQIKHLFLQKTLALAMITFDNLEE- 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 199 tqSMTDTDISNLNN----YVTnELSKWTQMFGMYLKRLDDDHFFLLGYASSLRRVEENKFRILDRIRESTSKQNFPLTLS 274
Cdd:PRK14538 218 --SLIRYDLSEQSQiqgeYLS-ALSDFIEPYEGYLKQLIDDRFLLLINRQNLDKMIENKFSILDTIRNISHKYQLKVTLS 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 275 IGIAYGERNMNNLADLAQSNMDLALGRGGDQVVVKSEDEPARFYGGKTNPMEKRTRVRARMISQTLQELMNQSDQIFVQG 354
Cdd:PRK14538 295 MGIACWNLSYDKLATYSQNAIELAQKRGGDQAVVNIENEKIKYFGAKIASLSKQSKVNARVNAQNLVDILKKNPHCFIMG 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 355 HRQPDMDAVGACLGIRRIAEMNGKQC--WIVLDEQNVHSDIQRLLDQL-KSDENIESAIISPEEALEKATDQSLLIMADH 431
Cdd:PRK14538 375 HNHTDLDSLGSMIAFYKIALTIHPDNnnYIILDEEKLDKSLTPVYHQLiKQEHKVTLNIITTQQASKMIKKNDLIAVLDT 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 432 SKPSISMSQALYErLENRVMIIDHHRRGEEFPENpVLVYIEPYASSTCELITEMFEYQSHDAEpINKIEATAMLTGIVID 511
Cdd:PRK14538 455 QTKDIVNSPELLS-LTNNIIVIDHHRATEEIIPS-IFSYVDSSASSTVELLVELMGFLEKEIH-ITAFEASIMYAGILID 531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 512 TKSFSLRSGSRTFDAASYLRSAGADSLLVQQFMKENVDSYLQRNHLIETVEFVNQDMALCvgEDDQVYDPVT-AAQAADS 590
Cdd:PRK14538 532 TNAFIYRTSSRTFEVASKLKDLGADAIEVKSWLRKDFDKVLEINKLISKMEIFMDRFAII--KSEEIYDNRSfLAQVAES 609
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489739527 591 LLSMSGVDASFVITRREDGRVGISARSLGEINVQVYMEKLGGGGHLSNAATQIEGQSVEAVKQSLIDLL 659
Cdd:PRK14538 610 VLNIQNVDAAFMIAKISDNTIAISARSYNEINVQTIMEQMEGGGHLNSAATQIKGTNIKTVTQTLKHLL 678
|
|
| DHH |
pfam01368 |
DHH family; It is predicted that this family of proteins all perform a phosphoesterase ... |
349-508 |
8.98e-32 |
|
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain] Cd Length: 145 Bit Score: 120.37 E-value: 8.98e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 349 QIFVQGHRQPDMDAVGACLGIRRIAEmngkqcwivldeQNVHSDIQRLLDqlksDENIESAIISPEEALEKATDQSLLIM 428
Cdd:pfam01368 1 KIVIYGHYNPDGDGIGSALGLYRYLK------------ELVGPDVEYYIP----DRLEEGYGINPEAIEELIDFDTLLIT 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 429 ADHSKPSISMSQALYErLENRVMIIDHHRRGEEFP-ENPVLVYIEPYASSTCELITEMFEYQSHDA-EPINKIEATAMLT 506
Cdd:pfam01368 65 VDCGIKSVEGIELAKE-LGIDVIVIDHHLPNDFLPdADAIINPREPPASSTSEVVFKLLQYAYGEEgKEIDKELADLLLL 143
|
..
gi 489739527 507 GI 508
Cdd:pfam01368 144 GI 145
|
|
| GGDEF |
smart00267 |
diguanylate cyclase; Diguanylate cyclase, present in a variety of bacteria. |
190-309 |
1.60e-08 |
|
diguanylate cyclase; Diguanylate cyclase, present in a variety of bacteria.
Pssm-ID: 128563 [Multi-domain] Cd Length: 163 Bit Score: 54.18 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 190 IFLDNYDEITQS----MTDTdisnLNNYVTNELSKWTQMfGMYLKRLDDDHFFLLGYASSLRRVEENKFRILDRIRESTS 265
Cdd:smart00267 40 IDLDNFKDINDTyghaVGDE----LLQEVAQRLSSCLRP-GDLLARLGGDEFALLLPETSLEEAIALAERILQQLREPII 114
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 489739527 266 KQN--FPLTLSIGIAYGERNMNNLADL---AQSNMDLALGRGGDQVVVK 309
Cdd:smart00267 115 IHGipLYLTISIGVAAYPNPGEDAEDLlkrADTALYQAKKAGRNQVAVY 163
|
|
| GGDEF |
cd01949 |
Diguanylate-cyclase (DGC) or GGDEF domain; Diguanylate-cyclase (DGC) or GGDEF domain: ... |
231-307 |
5.02e-03 |
|
Diguanylate-cyclase (DGC) or GGDEF domain; Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Pssm-ID: 143635 [Multi-domain] Cd Length: 158 Bit Score: 38.31 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 231 RLDDDHFFLLGYASSLRRVEEnkfrILDRIRESTSKQNF------PLTLSIGIAYGERNMNNLADL---AQSNMDLALGR 301
Cdd:cd01949 77 RLGGDEFAILLPGTDLEEAEA----LAERLREAIEEPFFidgqeiRVTASIGIATYPEDGEDAEELlrrADEALYRAKRS 152
|
....*.
gi 489739527 302 GGDQVV 307
Cdd:cd01949 153 GRNRVV 158
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GdpP |
COG3887 |
Cyclic di-AMP phosphodiesterase GdpP, contains GGDEF-like and DHH domains [Signal transduction ... |
11-664 |
0e+00 |
|
Cyclic di-AMP phosphodiesterase GdpP, contains GGDEF-like and DHH domains [Signal transduction mechanisms];
Pssm-ID: 443095 [Multi-domain] Cd Length: 662 Bit Score: 970.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 11 PFFLQNQQLRLLALVIFSLSLIMLVTGYLMNWIFGTVVLILIVMAVVISYNTLIELSSSANEYISDLSYRIKRGEQEALI 90
Cdd:COG3887 2 KKKLKKRKLRPLLLVLLLLLLLLLIILLFYNWIIGLLGLLLLILLLYYNIKAERKRRRELEKYIETLSYRVDKAGKEALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 91 QMPIGVMIFNSDQTIEWINPYLQRYFGDKDVLGYRLEDIEPTLAAT--LNAHLDEPATIRWQDYQFDVRVQQSTN----- 163
Cdd:COG3887 82 ELPIGIVLLDEDGEIEWYNPYFSEIFGDEDLLGKSLEDIFPELNLDklKEEEGEEPFTITIGDRYYRVYYKKVKDeeedl 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 164 -TVYMMDVTKYAELTDQFEDEKLVIGQIFLDNYDEITQSMTDTDISNLNNYVTNELSKWTQMFGMYLKRLDDDHFFLLGY 242
Cdd:COG3887 162 rLLYFFDVTEYEELKKEYEEERPVIGIIFIDNYDEVTQSMDESERSLLNSEVTRKLNDWANEYGGFLKRYSSDRYLAVMN 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 243 ASSLRRVEENKFRILDRIRESTSKQNFPLTLSIGIAYGERNMNNLADLAQSNMDLALGRGGDQVVVKSEDEpARFYGGKT 322
Cdd:COG3887 242 EKILEKLEEDKFSILDEIREITSGNNIPVTLSIGIGYGGDSLAELGELAQSALDLALGRGGDQVVVKDGDK-VRFYGGKT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 323 NPMEKRTRVRARMISQTLQELMNQSDQIFVQGHRQPDMDAVGACLGIRRIAEMNGKQCWIVLDEqnVHSDIQRLLDQLKS 402
Cdd:COG3887 321 NAVEKRTRVRARVIAHALRELIKESDNVFIMGHKNPDMDSIGAAIGVLRIAKMLGKEAYIVLDE--VNPSIDRLMEEIKE 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 403 DENIESAIISPEEALEKATDQSLLIMADHSKPSISMSQALYERLENRVmIIDHHRRGEEFPENPVLVYIEPYASSTCELI 482
Cdd:COG3887 399 EEEYEDLFISPEEALELITKNTLLVVVDTHRPSLVESPELLEKAEKVV-VIDHHRRGEEFIENPVLVYIEPYASSTSELV 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 483 TEMFEYQSHDAEpINKIEATAMLTGIVIDTKSFSLRSGSRTFDAASYLRSAGADSLLVQQFMKENVDSYLQRNHLIETVE 562
Cdd:COG3887 478 TELLQYQPDKIK-LSKLEATALLAGIVVDTKNFTLRTGVRTFEAASYLRRNGADTILVKQLFKEDLDTYIARAELISSAE 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 563 FVNQDMALCVGEDDQVYDPVTAAQAADSLLSMSGVDASFVITRREDGRVGISARSLGEINVQVYMEKLGGGGHLSNAATQ 642
Cdd:COG3887 557 IYRDGIAIAVGPEDIEYSQVIAAQAADELLNIKGIEASFVLTKRSDGKIGISARSLGEINVQVIMEKLGGGGHLTNAGAQ 636
|
650 660
....*....|....*....|..
gi 489739527 643 IEGQSVEAVKQSLIDLLTATDE 664
Cdd:COG3887 637 LKDVTIEEAKEQLKEAIDEYLE 658
|
|
| PRK14538 |
PRK14538 |
putative bifunctional signaling protein/50S ribosomal protein L9; Provisional |
43-659 |
2.03e-109 |
|
putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Pssm-ID: 173004 [Multi-domain] Cd Length: 838 Bit Score: 349.90 E-value: 2.03e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 43 IFGTVVLILIVMAVVISYNTLIELSSSANEYI--SDLSYRIKRGEQEALIQMPIG-VMIFNSDQTIEWINPYLQRYFGDK 119
Cdd:PRK14538 60 FLGKIILAILIISFLLNIKKNAQIKRLQNKLSlwSKLSFHVSQIGEEVLNELPIGiVLIDISSKEIQWLNPYANFILKNP 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 120 DVlGYRLEDIEPTLAATLNA-HLDEPATIRWQDYQFDVRVQQSTNTVYMMDVTKYAELTDQFEDEKLVIGQIFLDNYDEi 198
Cdd:PRK14538 140 EI-NTPLAQINESMAQLLLTsDKIPKTIITLKNQKFECFYKKDLNVFYLFNATEKEQIKHLFLQKTLALAMITFDNLEE- 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 199 tqSMTDTDISNLNN----YVTnELSKWTQMFGMYLKRLDDDHFFLLGYASSLRRVEENKFRILDRIRESTSKQNFPLTLS 274
Cdd:PRK14538 218 --SLIRYDLSEQSQiqgeYLS-ALSDFIEPYEGYLKQLIDDRFLLLINRQNLDKMIENKFSILDTIRNISHKYQLKVTLS 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 275 IGIAYGERNMNNLADLAQSNMDLALGRGGDQVVVKSEDEPARFYGGKTNPMEKRTRVRARMISQTLQELMNQSDQIFVQG 354
Cdd:PRK14538 295 MGIACWNLSYDKLATYSQNAIELAQKRGGDQAVVNIENEKIKYFGAKIASLSKQSKVNARVNAQNLVDILKKNPHCFIMG 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 355 HRQPDMDAVGACLGIRRIAEMNGKQC--WIVLDEQNVHSDIQRLLDQL-KSDENIESAIISPEEALEKATDQSLLIMADH 431
Cdd:PRK14538 375 HNHTDLDSLGSMIAFYKIALTIHPDNnnYIILDEEKLDKSLTPVYHQLiKQEHKVTLNIITTQQASKMIKKNDLIAVLDT 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 432 SKPSISMSQALYErLENRVMIIDHHRRGEEFPENpVLVYIEPYASSTCELITEMFEYQSHDAEpINKIEATAMLTGIVID 511
Cdd:PRK14538 455 QTKDIVNSPELLS-LTNNIIVIDHHRATEEIIPS-IFSYVDSSASSTVELLVELMGFLEKEIH-ITAFEASIMYAGILID 531
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 512 TKSFSLRSGSRTFDAASYLRSAGADSLLVQQFMKENVDSYLQRNHLIETVEFVNQDMALCvgEDDQVYDPVT-AAQAADS 590
Cdd:PRK14538 532 TNAFIYRTSSRTFEVASKLKDLGADAIEVKSWLRKDFDKVLEINKLISKMEIFMDRFAII--KSEEIYDNRSfLAQVAES 609
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489739527 591 LLSMSGVDASFVITRREDGRVGISARSLGEINVQVYMEKLGGGGHLSNAATQIEGQSVEAVKQSLIDLL 659
Cdd:PRK14538 610 VLNIQNVDAAFMIAKISDNTIAISARSYNEINVQTIMEQMEGGGHLNSAATQIKGTNIKTVTQTLKHLL 678
|
|
| NrnA |
COG0618 |
nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs [Nucleotide transport and ... |
338-659 |
3.72e-57 |
|
nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs [Nucleotide transport and metabolism, Signal transduction mechanisms];
Pssm-ID: 440383 [Multi-domain] Cd Length: 312 Bit Score: 196.18 E-value: 3.72e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 338 QTLQELMNQSDQIFVQGHRQPDMDAVGACLGIRRIAEMNGKQCWIVLDEqnvhsDIQRLLDQLKSDENIesaiISPEEAL 417
Cdd:COG0618 1 EELAELLKKADRILILTHVNPDGDALGSALALALLLRALGKEVTIVYPG-----EIPHELAFLPGADEI----VRLEDVD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 418 EKAtdqSLLIMADHSKPS-ISMSQALYERLEnRVMIIDHHRRGEEFPEnpvLVYIEPYASSTCELITEMFEYQSHdaePI 496
Cdd:COG0618 72 LEY---DLVIVVDTSSPDrIGDLAELLEKAK-PVIVIDHHPSNDDFGD---FNDVDPDAGATSEIIYELLKELGI---EI 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 497 NKIEATAMLTGIVIDTKSFSLRSGS-RTFDAASYLRSAGADSLLVQQFMKENVDSYLQR--NHLIETVEFVNQDMAL--C 571
Cdd:COG0618 142 DPEIATALYTGIVTDTGSFRYSNTTpRDFRAAAELLEKGADLDLIARILYPSLSLEQLKllGRALENLEVLEDGKVAysY 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 572 VGEDDQVYDPVT---AAQAADSLLSMSGVDASFVITRREDGRVGISARSLGEINVQVYMEKLGGGGHlSNAAT-QIEGQS 647
Cdd:COG0618 222 LTKEDLEEFGATpddTEGLVDYLLSIEGVEVAVVFGEVEDGEIKVSLRSKGRVDVGEIAREFGGGGH-ARAAGaTIPGLD 300
|
330
....*....|..
gi 489739527 648 VEAVKQSLIDLL 659
Cdd:COG0618 301 LEEVVEKLLEAL 312
|
|
| DHH |
pfam01368 |
DHH family; It is predicted that this family of proteins all perform a phosphoesterase ... |
349-508 |
8.98e-32 |
|
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain] Cd Length: 145 Bit Score: 120.37 E-value: 8.98e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 349 QIFVQGHRQPDMDAVGACLGIRRIAEmngkqcwivldeQNVHSDIQRLLDqlksDENIESAIISPEEALEKATDQSLLIM 428
Cdd:pfam01368 1 KIVIYGHYNPDGDGIGSALGLYRYLK------------ELVGPDVEYYIP----DRLEEGYGINPEAIEELIDFDTLLIT 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 429 ADHSKPSISMSQALYErLENRVMIIDHHRRGEEFP-ENPVLVYIEPYASSTCELITEMFEYQSHDA-EPINKIEATAMLT 506
Cdd:pfam01368 65 VDCGIKSVEGIELAKE-LGIDVIVIDHHLPNDFLPdADAIINPREPPASSTSEVVFKLLQYAYGEEgKEIDKELADLLLL 143
|
..
gi 489739527 507 GI 508
Cdd:pfam01368 144 GI 145
|
|
| DHHA1 |
pfam02272 |
DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called ... |
530-659 |
1.89e-09 |
|
DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members. This domains is also found in alanyl tRNA synthetase, suggesting that this domain may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.
Pssm-ID: 396724 [Multi-domain] Cd Length: 139 Bit Score: 56.30 E-value: 1.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 530 LRSAGADSLLVQQFM--KENVDSYLQRNHLIETVEFVNqDMALCVGEDDQVYDPVTAAQAADSLLSMSGVDASFVITRRE 607
Cdd:pfam02272 1 LESLNEELKELEKELeeLKEALALLKAKELLEKAEEIN-GVKVLVAEVGEGWDAGALGIAADRLKKKLGDPVIVLVAKED 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 608 DGRVGISARSLGE--INVQVYMEKL------GGGGHLSNAATQIEGQSVEAVKQSLIDLL 659
Cdd:pfam02272 80 GDKVKVSARSSKDkgVDAGELLKEVaailggGGGGHDLAAGAGIDAEKLDEALELLEEAI 139
|
|
| PPX1 |
COG1227 |
Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion]; |
348-512 |
1.19e-08 |
|
Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion];
Pssm-ID: 440840 [Multi-domain] Cd Length: 307 Bit Score: 57.09 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 348 DQIFVQGHRQPDMDAVGAClgirriaemngkqcwIVLDEqnvhsdiqrLLDQLksDENIESAI---ISPE---------- 414
Cdd:COG1227 2 MKILVFGHKNPDTDSICSA---------------IAYAY---------LKNQL--GEDAEAVRlgePNPEtafvldyfgv 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 415 ---EALEKATDQSLLIMADHSKPSismsQALyERLENR--VMIIDHHRRGEEFPENPVLVYIEPYAsSTCELITEMFEYq 489
Cdd:COG1227 56 eapELIEDVAAGKKVILVDHNELA----QSV-DGIDEAeiLEIIDHHRIGDFETAAPLYIRIEPVG-CTATIIAKLYKE- 128
|
170 180
....*....|....*....|...
gi 489739527 490 sHDAEPINKIeATAMLTGIVIDT 512
Cdd:COG1227 129 -NGVEIPKEI-AGLMLSAILSDT 149
|
|
| GGDEF |
smart00267 |
diguanylate cyclase; Diguanylate cyclase, present in a variety of bacteria. |
190-309 |
1.60e-08 |
|
diguanylate cyclase; Diguanylate cyclase, present in a variety of bacteria.
Pssm-ID: 128563 [Multi-domain] Cd Length: 163 Bit Score: 54.18 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 190 IFLDNYDEITQS----MTDTdisnLNNYVTNELSKWTQMfGMYLKRLDDDHFFLLGYASSLRRVEENKFRILDRIRESTS 265
Cdd:smart00267 40 IDLDNFKDINDTyghaVGDE----LLQEVAQRLSSCLRP-GDLLARLGGDEFALLLPETSLEEAIALAERILQQLREPII 114
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 489739527 266 KQN--FPLTLSIGIAYGERNMNNLADL---AQSNMDLALGRGGDQVVVK 309
Cdd:smart00267 115 IHGipLYLTISIGVAAYPNPGEDAEDLlkrADTALYQAKKAGRNQVAVY 163
|
|
| PRK14869 |
PRK14869 |
putative manganese-dependent inorganic diphosphatase; |
426-512 |
2.20e-05 |
|
putative manganese-dependent inorganic diphosphatase;
Pssm-ID: 237843 [Multi-domain] Cd Length: 546 Bit Score: 47.52 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 426 LIMADHSKPSIS---MSQAlyERLEnrvmIIDHHRRGEEFPENPVLVYIEPyASSTCELITEMfeYQSHDAEPINKIeAT 502
Cdd:PRK14869 307 VILVDHNEKSQAvegIEEA--EILE----IIDHHRLGDIQTSNPIFFRNEP-VGSTSTIVARM--YRENGIEPSPEI-AG 376
|
90
....*....|
gi 489739527 503 AMLTGIVIDT 512
Cdd:PRK14869 377 LLLAAILSDT 386
|
|
| PRK05427 |
PRK05427 |
putative manganese-dependent inorganic pyrophosphatase; Provisional |
350-512 |
2.32e-05 |
|
putative manganese-dependent inorganic pyrophosphatase; Provisional
Pssm-ID: 235458 [Multi-domain] Cd Length: 308 Bit Score: 46.74 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 350 IFVQGHRQPDMDAVGACLGIRRIAEMNGKQCWIV-LDEQNVHSdiQRLLDQLKSDEniesaiisPEeALEKATDQSLLIM 428
Cdd:PRK05427 4 ILVFGHKNPDTDSICSAIAYAYLKKALGLDAEAVrLGEPNPET--AFVLDYFGVEA--------PE-LITSVAGEVQVIL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 429 ADHSKPSismsQALYERLENRVM-IIDHHRRGEEFPENPVLVYIEPYAsSTCELITEMFEYqsHDAEpINKIEATAMLTG 507
Cdd:PRK05427 73 VDHNEFQ----QSPDDIDEATVVgVVDHHRLGNFETSNPLYYRIEPVG-CTATILYKMFKE--NGVE-IPKEIAGLMLSA 144
|
....*
gi 489739527 508 IVIDT 512
Cdd:PRK05427 145 ILSDT 149
|
|
| DhhP |
COG2404 |
Oligoribonuclease NrnA/c-di-AMP phosphodiesterase DhhP, DHH superfamily [Translation, ... |
358-640 |
4.28e-05 |
|
Oligoribonuclease NrnA/c-di-AMP phosphodiesterase DhhP, DHH superfamily [Translation, ribosomal structure and biogenesis, Signal transduction mechanisms];
Pssm-ID: 441960 [Multi-domain] Cd Length: 307 Bit Score: 46.10 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 358 PDMDAVGACLGIRRIAEMNGKQcwIVLDEQNVHSDIQRLLDQLKSDENIesAI--ISPEEALEKATDQSLLIMADHSKps 435
Cdd:COG2404 11 TDLDGVGCAALARRAFGDPVKL--YFASPGKLDEILERILEYLKKGELV--FItdLSPNKETLEEIEELLEELKEKGA-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 436 ismsqalyerlenRVMIIDHHRRGEE----FPENPVLVYIEPYASSTcELITEMFEYQSHDAEP------------INKI 499
Cdd:COG2404 85 -------------KVVWIDHHKWAEElanaLREAGVWLVVDTSTCAA-GLVYEYLHPEGDEFLEelvevvrdrdlwLWED 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 500 EATAMLTGIVidtksFSLRSGSRTFDAASYLRSAGADSLLVQQFMKENVDSYLQR-NHLIETVEFVN-QDMALCVGEDDQ 577
Cdd:COG2404 151 PESKDLNRLL-----FWLGDEEYKERLLEKLANGPLLDDEVEEALLEYRNEELERiEKALKRVVIREiNGYKVGVVYAPR 225
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489739527 578 VYDpvtaaqaadSLLS---MSGVDASFVITRREDGRVGIsaRSLGEINVQVYMEKLGGGGHlSNAA 640
Cdd:COG2404 226 GSQ---------SELGnllLERNGADFAVIVNPKGKVSL--RSRGFVDVSEIAKKLGGGGH-PNAA 279
|
|
| GGDEF |
cd01949 |
Diguanylate-cyclase (DGC) or GGDEF domain; Diguanylate-cyclase (DGC) or GGDEF domain: ... |
231-307 |
5.02e-03 |
|
Diguanylate-cyclase (DGC) or GGDEF domain; Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Pssm-ID: 143635 [Multi-domain] Cd Length: 158 Bit Score: 38.31 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 231 RLDDDHFFLLGYASSLRRVEEnkfrILDRIRESTSKQNF------PLTLSIGIAYGERNMNNLADL---AQSNMDLALGR 301
Cdd:cd01949 77 RLGGDEFAILLPGTDLEEAEA----LAERLREAIEEPFFidgqeiRVTASIGIATYPEDGEDAEELlrrADEALYRAKRS 152
|
....*.
gi 489739527 302 GGDQVV 307
Cdd:cd01949 153 GRNRVV 158
|
|
| GGDEF |
COG2199 |
GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants ... |
231-308 |
7.32e-03 |
|
GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants [Signal transduction mechanisms];
Pssm-ID: 441801 [Multi-domain] Cd Length: 275 Bit Score: 38.81 E-value: 7.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 231 RLDDDHFFLLGYASSLRRVEenkfRILDRIRESTSKQNF-------PLTLSIGIAYGERNMNNLADL---AQSNMDLALG 300
Cdd:COG2199 191 RLGGDEFAVLLPGTDLEEAE----ALAERLREALEQLPFelegkelRVTVSIGVALYPEDGDSAEELlrrADLALYRAKR 266
|
....*...
gi 489739527 301 RGGDQVVV 308
Cdd:COG2199 267 AGRNRVVV 274
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
19-131 |
7.72e-03 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 39.17 E-value: 7.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489739527 19 LRLLALVIFSLSLIMLVTGYLMNWIFGTVVLI-----------LIVMAVVISYNTLIELSSSANEYISDLSYRIKRGEQ- 86
Cdd:COG5000 9 LLLLLIALLLLLLALWLALLLARRLTRPLRRLaeatravaagdLSVRLPVTGDDEIGELARAFNRMTDQLKEQREELEEr 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 489739527 87 ----EALIQ-MPIGVMIFNSDQTIEWINPYLQRYFG--DKDVLGYRLEDIEP 131
Cdd:COG5000 89 rrylETILEnLPAGVIVLDADGRITLANPAAERLLGipLEELIGKPLEELLP 140
|
|
| |
