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Conserved domains on  [gi|489753315|ref|WP_003657311|]
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MULTISPECIES: ribosome maturation factor RimP [Moraxella]

Protein Classification

ribosome maturation factor RimP( domain architecture ID 10014792)

ribosome maturation factor RimP is required for maturation of 30S ribosomal subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14631 PRK14631
ribosome maturation factor RimP;
1-165 3.04e-98

ribosome maturation factor RimP;


:

Pssm-ID: 237772 [Multi-domain]  Cd Length: 174  Bit Score: 280.62  E-value: 3.04e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   1 MKPSSKIAELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESLPENRA-----------AGEHVTIEDCSAVNHQVS 69
Cdd:PRK14631   1 MKLSNKSQALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAepvinedgeveQGRGIGVEDCVRVTQQVG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  70 GVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIgsgdTKRRKVVGRLTCVG--EDSMTVITEDKL 147
Cdd:PRK14631  81 AMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAV----ENRRKFQAKLLAVDleNEEIQVEVEGKH 156

                        170
                 ....*....|....*...
gi 489753315 148 EFNIAFDSVDKAHLVYED 165
Cdd:PRK14631 157 VLDIDSNNIDKANLIYQD 174
 
Name Accession Description Interval E-value
PRK14631 PRK14631
ribosome maturation factor RimP;
1-165 3.04e-98

ribosome maturation factor RimP;


Pssm-ID: 237772 [Multi-domain]  Cd Length: 174  Bit Score: 280.62  E-value: 3.04e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   1 MKPSSKIAELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESLPENRA-----------AGEHVTIEDCSAVNHQVS 69
Cdd:PRK14631   1 MKLSNKSQALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAepvinedgeveQGRGIGVEDCVRVTQQVG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  70 GVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIgsgdTKRRKVVGRLTCVG--EDSMTVITEDKL 147
Cdd:PRK14631  81 AMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAV----ENRRKFQAKLLAVDleNEEIQVEVEGKH 156

                        170
                 ....*....|....*...
gi 489753315 148 EFNIAFDSVDKAHLVYED 165
Cdd:PRK14631 157 VLDIDSNNIDKANLIYQD 174
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
4-165 1.09e-51

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 161.83  E-value: 1.09e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   4 SSKIAELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIEslpenRAAGehVTIEDCSAVNHQVSGVLDVHDPIAGEYV 83
Cdd:COG0779    2 SGLEERLEELLEPVLEELGLELVDVEVVKEGKRWVLRVYID-----KDGG--VTLDDCAAVSRALSAVLDVEDPIPGAYT 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  84 LEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGsgdtKRRKVVGRLTCVGEDSMTVITEDKlEFNIAFDSVDKAHLVY 163
Cdd:COG0779   75 LEVSSPGLDRPLKKPRDFERFIGRLVKVKLREPID----GRKKFTGRLLGVDDDGVTLEVDGK-EVEIPLDDIAKARLVI 149


                 ..
gi 489753315 164 ED 165
Cdd:COG0779  150 EF 151
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 13-92 2.29e-23

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 87.27  E-value: 2.29e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   13 LIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESlpENRaagehVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEVSSPGFD 92
Cdd:pfam02576   1 LIEPVVESLGFELVDVEFVKEGGGWTLRIYIDK--DGG-----VTIDDCAKVSRAISAVLDVEDPISGEYTLEVSSPGLD 73
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 90-165 2.72e-18

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 74.41  E-value: 2.72e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489753315  90 GFDRPLFTREQVAAYVGETINLRLIHAIGsgdtKRRKVVGRLTCVGEDSMTVITEDKLEFNIAFDSVDKAHLVYED 165
Cdd:cd01734    1 GLDRPLKKPEDFERFIGKEVKVKLKEPID----GRKKFTGELLGVDDDTVTLEVDDGKEVEIPFDNIAKARLVPEF 72
 
Name Accession Description Interval E-value
PRK14631 PRK14631
ribosome maturation factor RimP;
1-165 3.04e-98

ribosome maturation factor RimP;


Pssm-ID: 237772 [Multi-domain]  Cd Length: 174  Bit Score: 280.62  E-value: 3.04e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   1 MKPSSKIAELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESLPENRA-----------AGEHVTIEDCSAVNHQVS 69
Cdd:PRK14631   1 MKLSNKSQALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAepvinedgeveQGRGIGVEDCVRVTQQVG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  70 GVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIgsgdTKRRKVVGRLTCVG--EDSMTVITEDKL 147
Cdd:PRK14631  81 AMLDVHDPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAV----ENRRKFQAKLLAVDleNEEIQVEVEGKH 156

                        170
                 ....*....|....*...
gi 489753315 148 EFNIAFDSVDKAHLVYED 165
Cdd:PRK14631 157 VLDIDSNNIDKANLIYQD 174
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
4-165 1.09e-51

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 161.83  E-value: 1.09e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   4 SSKIAELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIEslpenRAAGehVTIEDCSAVNHQVSGVLDVHDPIAGEYV 83
Cdd:COG0779    2 SGLEERLEELLEPVLEELGLELVDVEVVKEGKRWVLRVYID-----KDGG--VTLDDCAAVSRALSAVLDVEDPIPGAYT 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  84 LEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGsgdtKRRKVVGRLTCVGEDSMTVITEDKlEFNIAFDSVDKAHLVY 163
Cdd:COG0779   75 LEVSSPGLDRPLKKPRDFERFIGRLVKVKLREPID----GRKKFTGRLLGVDDDGVTLEVDGK-EVEIPLDDIAKARLVI 149


                 ..
gi 489753315 164 ED 165
Cdd:COG0779  150 EF 151
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 4-164 5.69e-50

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 157.66  E-value: 5.69e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   4 SSKIAELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESlpENRaagehVTIEDCSAVNHQVSGVLDVHDPIAGEYV 83
Cdd:PRK00092   3 SPLEEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDK--EGG-----IDLDDCEEVSRQISAVLDVEDPIPGAYT 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  84 LEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGsgdtKRRKVVGRLTCVGEDSMTVITEDK-LEFNIAFDSVDKAHLV 162
Cdd:PRK00092  76 LEVSSPGLDRPLKKARDFRRFIGREVKVKLYEPID----GRKKFQGILLAVDGETVTLEVEGKeKEVEIPLDNIAKARLV 151


                 ..
gi 489753315 163 YE 164
Cdd:PRK00092 152 VE 153
PRK14640 PRK14640
hypothetical protein; Provisional
 10-162 1.37e-38

hypothetical protein; Provisional


Pssm-ID: 173103 [Multi-domain]  Cd Length: 152  Bit Score: 128.59  E-value: 1.37e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  10 LTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESlpENraageHVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEVSSP 89
Cdd:PRK14640   8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDG--EN-----GVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSP 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489753315  90 GFDRPLFTREQVAAYVGETINLRLIHAIGSgdtkRRKVVGRLTCVGEDSMTVITEDKLEFnIAFDSVDKAHLV 162
Cdd:PRK14640  81 GLDRPLFKVAQFEKYVGQEAAVTLRMATNN----RRKFKGVIKAVQGDMITLTVDGKDEV-LAFTNIQKANIV 148
PRK14632 PRK14632
ribosome maturation factor RimP;
13-163 3.89e-25

ribosome maturation factor RimP;


Pssm-ID: 173095 [Multi-domain]  Cd Length: 172  Bit Score: 94.75  E-value: 3.89e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  13 LIAPAVAACGVDLWGIEFMPQGRKsLLRIYIEslpenraAGEHVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEVSSPGFD 92
Cdd:PRK14632  13 MAGPFLASLGLELWGIELSYGGRT-VVRLFVD-------GPEGVTIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  93 RPLFTREQVAAYVGETINLRLI--HAIGSGdtkRRKVVGRLTCVGEDSMTVI-------TEDKLEFNIAFDSVDKAHLVY 163
Cdd:PRK14632  85 RPFFRAEQMSPYVGRQIELTLIdpTPEWPG---RRKFRGELLAVEGDTVVLRpegapapEAEEAVLRTSWQGVRKANLIH 161
PRK14636 PRK14636
ribosome maturation protein RimP;
7-165 5.06e-25

ribosome maturation protein RimP;


Pssm-ID: 237773 [Multi-domain]  Cd Length: 176  Bit Score: 94.85  E-value: 5.06e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   7 IAELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESlPENRaageHVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEV 86
Cdd:PRK14636   4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAER-PDTR----QLVIEDCAALSRRLSDVFDELDPIEDAYRLEV 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489753315  87 SSPGFDRPLFTREQVAAYVGETINLRLIHAIGSgdtkRRKVVGRLTCVGEDSMTVITEDKLEFNIAFDSVDKAHLVYED 165
Cdd:PRK14636  79 SSPGIDRPLTRPKDFADWAGHEARIALSEPLDG----RKQFRGELKGIDGDTVTIADNKAGEVILPFAAIESAKLILTD 153
PRK14647 PRK14647
ribosome maturation factor RimP;
7-164 1.41e-24

ribosome maturation factor RimP;


Pssm-ID: 173110 [Multi-domain]  Cd Length: 159  Bit Score: 92.89  E-value: 1.41e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   7 IAELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIEslpenRAAGehVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEV 86
Cdd:PRK14647   7 VDRVTELAEQVLSSLGLELVELEYKREGREMVLRLFID-----KEGG--VNLDDCAEVSRELSEILDVEDFIPERYTLEV 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489753315  87 SSPGFDRPLFTREQVAAYVGETINLRLIHAIGSGDTKRRKV-VGRLTCVGEDSMTVITEDKLEFNIAFDSVDKAHLVYE 164
Cdd:PRK14647  80 SSPGLDRPLKKEADYERYAGRLVKVRTFELLADEAGNKRKTfLGELEGLADGVVTIALKEGQQARIPLDKIAKANLEFE 158
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 13-92 2.29e-23

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 87.27  E-value: 2.29e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   13 LIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESlpENRaagehVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEVSSPGFD 92
Cdd:pfam02576   1 LIEPVVESLGFELVDVEFVKEGGGWTLRIYIDK--DGG-----VTIDDCAKVSRAISAVLDVEDPISGEYTLEVSSPGLD 73
PRK14633 PRK14633
ribosome maturation factor RimP;
9-158 5.35e-20

ribosome maturation factor RimP;


Pssm-ID: 173096 [Multi-domain]  Cd Length: 150  Bit Score: 81.17  E-value: 5.35e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   9 ELTELIAPAVAACGVDLWGIEFMPQGrKSLLRIYIESlpENraageHVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEVSS 88
Cdd:PRK14633   5 DLYEIVEPITADLGYILWGIEVVGSG-KLTIRIFIDH--EN-----GVSVDDCQIVSKEISAVFDVEDPVSGKYILEVSS 76

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  89 PGFDRPLFTREQVAAYVGETINLRLIHAIGSgDTKRRKVVGRltcVGEDSMTVITEDKLEFNIAFDSVDK 158
Cdd:PRK14633  77 PGMNRQIFNIIQAQALVGFNVKAVTLAPVGS-QTKFKGVLER---VEGNNVILNLEDGKEISFDFDELKK 142
PRK14639 PRK14639
ribosome maturation factor RimP;
18-159 6.97e-19

ribosome maturation factor RimP;


Pssm-ID: 173102 [Multi-domain]  Cd Length: 140  Bit Score: 77.94  E-value: 6.97e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  18 VAACGVDLWGIEFMPQGRKSLLRIYIEslpenRAAGehVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEVSSPGFDRPLFT 97
Cdd:PRK14639   7 CKECGVSFYDDELVSENGRKIYRVYIT-----KEGG--VNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSK 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489753315  98 REQVAAYVGETINLRLihaigsgdTKRRKVVGRLTCVGEDSMTVIT-EDKLEFNIAFDSVDKA 159
Cdd:PRK14639  80 IEHFAKSIGELVKITT--------NEKEKFEGKIVSVDDENITLENlENKEKTTINFNDIKKA 134
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 90-165 2.72e-18

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 74.41  E-value: 2.72e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489753315  90 GFDRPLFTREQVAAYVGETINLRLIHAIGsgdtKRRKVVGRLTCVGEDSMTVITEDKLEFNIAFDSVDKAHLVYED 165
Cdd:cd01734    1 GLDRPLKKPEDFERFIGKEVKVKLKEPID----GRKKFTGELLGVDDDTVTLEVDDGKEVEIPFDNIAKARLVPEF 72
PRK14638 PRK14638
ribosome maturation factor RimP;
22-161 1.67e-13

ribosome maturation factor RimP;


Pssm-ID: 184777 [Multi-domain]  Cd Length: 150  Bit Score: 64.11  E-value: 1.67e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  22 GVDLWGIEFMPQGRKSLLRIYIESlPENraageHVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEVSSPGFDRPLFTREQV 101
Cdd:PRK14638  22 GLEIFDVQYRRESRGWVLRIIIDN-PVG-----YVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPLRGPKDY 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489753315 102 AAYVGetinlRLIHAIgsgdTKRRKV-VGRLTCVGEDSMTvITEDKLEFNIAFDSVDKAHL 161
Cdd:PRK14638  96 VRFTG-----KLAKIV----TKDGKTfIGRIESFVDGTIT-ISDEKEKYEINIDDVKRANL 146
PRK14642 PRK14642
ribosome maturation factor RimP;
10-131 2.35e-13

ribosome maturation factor RimP;


Pssm-ID: 237775 [Multi-domain]  Cd Length: 197  Bit Score: 64.50  E-value: 2.35e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  10 LTELIAPAVAACGVDLWGIEFMPQGrksLLRIYIE---SLPENRAAG---EHVTIEDCSAVNHQVSGVLDVHdpiAGEYV 83
Cdd:PRK14642   3 LQQIVEQTVTGLGYDLVEIERSAGG---LLRVTIDlpwVPPTEGAPVgpeQFVTVEDCEKVTRQLQFALEVD---GVDYK 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489753315  84 -LEVSSPGFDRPLFTREQVAAYVGETINLRLIHAIGSG-----DTKRRKVVGRL 131
Cdd:PRK14642  77 rLEVSSPGIDRPLRHEQDFERFAGEVIDITLKAPIGAAaggqvSANRKKFRGTL 130
PRK14645 PRK14645
ribosome maturation factor RimP;
10-106 6.74e-13

ribosome maturation factor RimP;


Pssm-ID: 184780 [Multi-domain]  Cd Length: 154  Bit Score: 62.48  E-value: 6.74e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  10 LTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIESLPEnraagEHVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEVSSP 89
Cdd:PRK14645  11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDE-----QPVTVEDLERASRALEAELDRLDPIEGEYRLEVESP 85

                         90
                 ....*....|....*..
gi 489753315  90 GFDRPLFTREQVAAYVG 106
Cdd:PRK14645  86 GPKRPLFTARHFERFAG 102
DUF150_C pfam17384
RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.
 95-165 8.11e-08

RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.


Pssm-ID: 465408  Cd Length: 67  Bit Score: 46.85  E-value: 8.11e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489753315   95 LFTREQVAAYVGETINLRLIHAIGsgdtKRRKVVGRLTCVGEDSMTVITEDKLEFNIAFDSVDKAHLVYED 165
Cdd:pfam17384   1 LFTAEHFARFIGELVKVKLKLPID----GRKKFQGKIVAVDGETITLEVDGKTEVTIPFDDIDKARLVPEF 67
PRK14646 PRK14646
ribosome maturation factor RimP;
53-161 3.18e-04

ribosome maturation factor RimP;


Pssm-ID: 173109 [Multi-domain]  Cd Length: 155  Bit Score: 39.16  E-value: 3.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  53 GEHVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEVSSPGFDRPLFTREQVAAYVGETINLRLihaiGSGDTKRRKVVGRLT 132
Cdd:PRK14646  47 GDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSDELTSERDFKTFKGFPVNVEL----NQKNSKIKFLNGLLY 122

                         90       100
                 ....*....|....*....|....*....
gi 489753315 133 CVGEDSMTVITEDKLEfNIAFDSVDKAHL 161
Cdd:PRK14646 123 EKSKDYLAINIKGKIK-KIPFNEVLKISL 150
PRK14637 PRK14637
ribosome maturation factor RimP;
56-162 6.94e-04

ribosome maturation factor RimP;


Pssm-ID: 237774 [Multi-domain]  Cd Length: 151  Bit Score: 37.92  E-value: 6.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315  56 VTIEDCSAVNH----QVSGVLDVHDpiageYVLEVSSPGFDRPLFTREQVAAYVGETINLRLihaigSGDTKRRkvVGRL 131
Cdd:PRK14637  49 VGLDDCARVHRilvpRLEALGGVRD-----VFLEVSSPGIERVIKNAAEFSIFVGETVKVWF-----ECTGQWQ--VGTI 116

                         90       100       110
                 ....*....|....*....|....*....|.
gi 489753315 132 TCVGEDSMtVITEDKLEFNIAFDSVDKAHLV 162
Cdd:PRK14637 117 AEADETCL-VLTSDGVPVTIPYVQITKAQLH 146
PRK14634 PRK14634
ribosome maturation factor RimP;
3-90 1.04e-03

ribosome maturation factor RimP;


Pssm-ID: 173097 [Multi-domain]  Cd Length: 155  Bit Score: 37.47  E-value: 1.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489753315   3 PSSKIAELTELIAPAVAACGVDLWGIEFMPQGRKSLLRIYIEslpenRAAGEHVTIEDCSAVNHQVSGVLDVHDPIAGEY 82
Cdd:PRK14634   2 PHPLLPDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIR-----RSSGSDVSLDDCAGFSGPMGEALEASQLLTEAY 76


                 ....*...
gi 489753315  83 VLEVSSPG 90
Cdd:PRK14634  77 VLEISSPG 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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