|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10361 |
PRK10361 |
DNA recombination protein RmuC; Provisional |
22-446 |
0e+00 |
|
DNA recombination protein RmuC; Provisional
Pssm-ID: 182409 [Multi-domain] Cd Length: 475 Bit Score: 570.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 22 AVWWLI------QQR---LAEKENLlrenYTQLAVAQQKALVIPSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEE 92
Cdd:PRK10361 17 AIGWLFasyqhaQQKaeqLAEREEM----VAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 93 SRISAEEKQRLLLNSEQRLATQFENLANRIFEQSGRKAQELNRQGLTHLLSPFREQLESFRRQVQEGFGQEARERHTLVH 172
Cdd:PRK10361 93 AQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAH 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 173 EIRQLQQLNVKMAQEAVNLTNALKGDNKIQGNWGETVLARILESSGLREGHEFETQVSIRHENGSRYQPDVIVHLPHRRD 252
Cdd:PRK10361 173 EIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKD 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 253 VIIDAKMSLIAYERYFNSSDENEQKQALHAHVNSIRAHIKGLSLKDYHKLPGVTSLDYVLMFIPIEPAYLVAIGHSPDLL 332
Cdd:PRK10361 253 VVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELI 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 333 EEALKNNIMLVGPSTLLVALRTIAALWRYEYQSQNAQEIADRAAKMYDKLRLFVDDMQGLGNSIQKAQSGYLLAMKKLSE 412
Cdd:PRK10361 333 TEALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSS 412
|
410 420 430
....*....|....*....|....*....|....
gi 490366458 413 GRGNLISQAEGFKSLGVEIKKTIDNDLVEKSASD 446
Cdd:PRK10361 413 GRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQ 446
|
|
| RmuC |
COG1322 |
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ... |
107-439 |
1.60e-146 |
|
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];
Pssm-ID: 440933 Cd Length: 342 Bit Score: 421.11 E-value: 1.60e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 107 SEQRLATQFENLANRIFEQSGRKAQELNRQGLTHLLSPFREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKMAQ 186
Cdd:COG1322 3 LQERLTGEFENLANEILEEKLEKFQEQNEERLDQLLKPLRETLDEFEKKLEETEKRRAESFGSLSERLEQLDEAQQQLSQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 187 EAVNLTNALKgDNKIQGNWGETVLARILESSGLREGHEFETQVSIRHENGSRYQPDVIVHLPHRRDVIIDAKMSLIAYER 266
Cdd:COG1322 83 EVGNLTRALK-NKKTRGNWGEVQLERILEDAGLPEGCEYEEQVSLSNEDGSRLRPDVIVRLPGGKWLVIDAKFPLEAYER 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 267 YFNSSDENEQKQALHAHVNSIRAHIKGLSLKDYHKLPGVTSLDYVLMFIPIEPAYLVAIGHSPDLLEEALKNNIMLVGPS 346
Cdd:COG1322 162 LVEAEDEEEREAALKAHARSVRKHIKDLSEKDYWDLIPPETPDFVLMFLPIEGAYAEALERDPGLIEEAFEKRVVLVSPT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 347 TLLVALRTIAALWRYEYQSQNAQEIADRAAKMYDKLRLFVDDMQGLGNSIQKAQSGYLLAMKKLSegrGNLISQAEGFKS 426
Cdd:COG1322 242 TLMALLRTVQMGWRQEAQEENASEIAELLGALYDEFGRFGERLEKLGKHLDQAQKDYNQAVGKLT---GNLLRRARKLEE 318
|
330
....*....|...
gi 490366458 427 LGVEIKKTIDNDL 439
Cdd:COG1322 319 LGAEEKKELPELL 331
|
|
| RmuC |
pfam02646 |
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The ... |
136-429 |
1.63e-126 |
|
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures
Pssm-ID: 460637 Cd Length: 286 Bit Score: 367.98 E-value: 1.63e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 136 QGLTHLLSPFREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKMAQEAVNLTNALKgDNKIQGNWGETVLARILE 215
Cdd:pfam02646 1 ERLDQLLKPLREKLEKFLEKVEETEKERSERLASLKEQLGELQELNQQVGDEANNLTRALK-NPKTRGNWGEVQLERILE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 216 SSGLREGHEFETQVSIRHENGsRYQPDVIVHLPHRRDVIIDAKMSLIAYERYFNSSDENEQKQALHAHVNSIRAHIKGLS 295
Cdd:pfam02646 80 QSGLREGCDYETQVSLTDEEG-RLRPDVIVKLPGGKHLVIDSKVPLEAYERYVNAEDDAEREAALKAHARSVRKHIKDLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 296 LKDYHKLPgvtSLDYVLMFIPIEPAYLVAIGHSPDLLEEALKNNIMLVGPSTLLVALRTIAALWRYEYQSQNAQEIADRA 375
Cdd:pfam02646 159 SKDYWDLP---SPDFVLMFIPIEGAFAEALERDPGLIEEAFRKNVVLASPTTLLALLRTVAMGWRQEAQNKNAEEIAELA 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 490366458 376 AKMYDKLRLFVDDMQGLGNSIQKAQSGYLLAMKKLSegrGNLISQAEGFKSLGV 429
Cdd:pfam02646 236 GELYDRFGKFGEHLEKLGKKLDQAVKSYDKAVGKLE---GNLLRRARKLEELGV 286
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
27-186 |
1.13e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 27 IQQRLAEKENLLRENYTQLAVAQQKalvIPSLQQQIAHLEQELRAQREIITSQEAELREvttrWEESRISAEEKQRLLLN 106
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAE---LARLEQDIARLEERRRELEERLEELEEELAE----LEEELEELEEELEELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 107 SEQRLATQFENLANRIfEQSGRKAQELNRQglthlLSPFREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKMAQ 186
Cdd:COG1196 345 ELEEAEEELEEAEAEL-AEAEEALLEAEAE-----LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
22-195 |
2.20e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 22 AVWWLIQQRLAEKENLLRENYTQLAvaqqkalvipSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEES---RISAE 98
Cdd:COG4913 281 LRLWFAQRRLELLEAELEELRAELA----------RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQlerEIERL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 99 EKQRLLLnseQRLATQFENLANRIFEQSGRKAQEL--NRQGLTHLLSPFREQLESFRRQVQEGFGQEA---RERHTLVHE 173
Cdd:COG4913 351 ERELEER---ERRRARLEALLAALGLPLPASAEEFaaLRAEAAALLEALEEELEALEEALAEAEAALRdlrRELRELEAE 427
|
170 180
....*....|....*....|..
gi 490366458 174 IRQLQQLNVKMAQEAVNLTNAL 195
Cdd:COG4913 428 IASLERRKSNIPARLLALRDAL 449
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-180 |
4.28e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 4.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 2 DIQLLYGIIGLLGGVLVGGIAVWWLIQQRLAEKENLLRENYTQLAVAQQKAL----VIPSLQQQIAHLEQELRAQREIIT 77
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEIEELEAQIEQLKEELKALREALD 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 78 SQEAELRE-------VTTRWEESRISAEEKQRLLLNSEQRLATQFENLA--NRIFEQSGRKAQELNRQgLTHLLSPfREQ 148
Cdd:TIGR02168 807 ELRAELTLlneeaanLRERLESLERRIAATERRLEDLEEQIEELSEDIEslAAEIEELEELIEELESE-LEALLNE-RAS 884
|
170 180 190
....*....|....*....|....*....|..
gi 490366458 149 LESFRRQVQEGFGQEARERHTLVHEIRQLQQL 180
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRE 916
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
47-186 |
8.71e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 8.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 47 VAQQKALVIPSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEESRISAEEKQRLLLNSEQRLATQFENLANRI-FEQ 125
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIrQEE 357
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490366458 126 SGRKAQELNRQGLTHLLSPFR--EQLESFRRQVQEGFGQ--EARERHTLVHEIRQ--LQQLNVKMAQ 186
Cdd:pfam17380 358 RKRELERIRQEEIAMEISRMRelERLQMERQQKNERVRQelEAARKVKILEEERQrkIQQQKVEMEQ 424
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
27-196 |
1.57e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 27 IQQRLAEKENLLRENYTQLAvaqqkalvipSLQQQIAHLEQELRAQREIITSQEAELREVttrweESRISAEEKQRLLLn 106
Cdd:COG4942 32 LQQEIAELEKELAALKKEEK----------ALLKQLAALERRIAALARRIRALEQELAAL-----EAELAELEKEIAEL- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 107 sEQRLATQFENLANRIfeqsgRKAQELNRQGLTHLLSPFREQLESFRRQVQEGFGQEARERH--TLVHEIRQLQQLNVKM 184
Cdd:COG4942 96 -RAELEAQKEELAELL-----RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQaeELRADLAELAALRAEL 169
|
170
....*....|..
gi 490366458 185 AQEAVNLTNALK 196
Cdd:COG4942 170 EAERAELEALLA 181
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
28-212 |
5.48e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.15 E-value: 5.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 28 QQRLAEKENLLRENYTQLAvAQQKALVIPSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEESRISAEEKQRLL--- 104
Cdd:COG1196 208 QAEKAERYRELKEELKELE-AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELeea 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 105 LNSEQRLATQFENLANRIFEQSGRKAQELNRqglthllspfREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKM 184
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEER----------LEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180
....*....|....*....|....*...
gi 490366458 185 AQEAVNLTNALKGDNKIQGNWGETVLAR 212
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEEL 384
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
28-196 |
5.55e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.27 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 28 QQRLAEKENLLRENYTQLAVAQQKALvipSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEESRISAEEKQRLLLNS 107
Cdd:TIGR02168 266 EEKLEELRLEVSELEEEIEELQKELY---ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 108 EQR---LATQFENLANRiFEQSGRKAQELNRQglthlLSPFREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKM 184
Cdd:TIGR02168 343 EEKleeLKEELESLEAE-LEELEAELEELESR-----LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
170
....*....|..
gi 490366458 185 AQEAVNLTNALK 196
Cdd:TIGR02168 417 ERLQQEIEELLK 428
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
27-170 |
6.29e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.15 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 27 IQQRLAEKENLLRENYTQLAVAQQKALVipsLQQQIAHLEQEL--------RAQREIITSQEAELREVTTRwEESRISAE 98
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAE---LAAQLEELEEAEeallerleRLEEELEELEEALAELEEEE-EEEEEALE 445
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490366458 99 EKQRLLLNSEQRLATQFENLANRIFEQSGRKAQELNRQGLTHLLSPfREQLESFRRQVQEGFGQEARERHTL 170
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA-RLLLLLEAEADYEGFLEGVKAALLL 516
|
|
| PRK15178 |
PRK15178 |
Vi polysaccharide ABC transporter inner membrane protein VexD; |
28-171 |
7.05e-03 |
|
Vi polysaccharide ABC transporter inner membrane protein VexD;
Pssm-ID: 185100 Cd Length: 434 Bit Score: 38.57 E-value: 7.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 28 QQRLAEKENLLRENYTQLAVAQQKALVIPSLQQQIAHLEQeLRAQREIITSQEAELREVTTRWEESRISAEEKQRLLlns 107
Cdd:PRK15178 241 KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKET-ITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLI--- 316
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490366458 108 eQRLATQFENLANRIFEQSGRKAQELNRQGLTHLLSPFRE----------QLESFRRQVQEGFGQEARERHTLV 171
Cdd:PRK15178 317 -PRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDlrlqseiakaRWESALQTLQQGKLQALRERQYLL 389
|
|
|