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Conserved domains on  [gi|490366458|ref|WP_004246122|]
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MULTISPECIES: DNA recombination protein RmuC [Proteus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10361 super family cl42919
DNA recombination protein RmuC; Provisional
22-446 0e+00

DNA recombination protein RmuC; Provisional


The actual alignment was detected with superfamily member PRK10361:

Pssm-ID: 182409 [Multi-domain]  Cd Length: 475  Bit Score: 570.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  22 AVWWLI------QQR---LAEKENLlrenYTQLAVAQQKALVIPSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEE 92
Cdd:PRK10361  17 AIGWLFasyqhaQQKaeqLAEREEM----VAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEA 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  93 SRISAEEKQRLLLNSEQRLATQFENLANRIFEQSGRKAQELNRQGLTHLLSPFREQLESFRRQVQEGFGQEARERHTLVH 172
Cdd:PRK10361  93 AQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAH 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 173 EIRQLQQLNVKMAQEAVNLTNALKGDNKIQGNWGETVLARILESSGLREGHEFETQVSIRHENGSRYQPDVIVHLPHRRD 252
Cdd:PRK10361 173 EIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKD 252
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 253 VIIDAKMSLIAYERYFNSSDENEQKQALHAHVNSIRAHIKGLSLKDYHKLPGVTSLDYVLMFIPIEPAYLVAIGHSPDLL 332
Cdd:PRK10361 253 VVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELI 332
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 333 EEALKNNIMLVGPSTLLVALRTIAALWRYEYQSQNAQEIADRAAKMYDKLRLFVDDMQGLGNSIQKAQSGYLLAMKKLSE 412
Cdd:PRK10361 333 TEALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSS 412
                        410       420       430
                 ....*....|....*....|....*....|....
gi 490366458 413 GRGNLISQAEGFKSLGVEIKKTIDNDLVEKSASD 446
Cdd:PRK10361 413 GRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQ 446
 
Name Accession Description Interval E-value
PRK10361 PRK10361
DNA recombination protein RmuC; Provisional
22-446 0e+00

DNA recombination protein RmuC; Provisional


Pssm-ID: 182409 [Multi-domain]  Cd Length: 475  Bit Score: 570.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  22 AVWWLI------QQR---LAEKENLlrenYTQLAVAQQKALVIPSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEE 92
Cdd:PRK10361  17 AIGWLFasyqhaQQKaeqLAEREEM----VAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEA 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  93 SRISAEEKQRLLLNSEQRLATQFENLANRIFEQSGRKAQELNRQGLTHLLSPFREQLESFRRQVQEGFGQEARERHTLVH 172
Cdd:PRK10361  93 AQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAH 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 173 EIRQLQQLNVKMAQEAVNLTNALKGDNKIQGNWGETVLARILESSGLREGHEFETQVSIRHENGSRYQPDVIVHLPHRRD 252
Cdd:PRK10361 173 EIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKD 252
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 253 VIIDAKMSLIAYERYFNSSDENEQKQALHAHVNSIRAHIKGLSLKDYHKLPGVTSLDYVLMFIPIEPAYLVAIGHSPDLL 332
Cdd:PRK10361 253 VVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELI 332
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 333 EEALKNNIMLVGPSTLLVALRTIAALWRYEYQSQNAQEIADRAAKMYDKLRLFVDDMQGLGNSIQKAQSGYLLAMKKLSE 412
Cdd:PRK10361 333 TEALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSS 412
                        410       420       430
                 ....*....|....*....|....*....|....
gi 490366458 413 GRGNLISQAEGFKSLGVEIKKTIDNDLVEKSASD 446
Cdd:PRK10361 413 GRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQ 446
RmuC COG1322
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ...
107-439 1.60e-146

DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];


Pssm-ID: 440933  Cd Length: 342  Bit Score: 421.11  E-value: 1.60e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 107 SEQRLATQFENLANRIFEQSGRKAQELNRQGLTHLLSPFREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKMAQ 186
Cdd:COG1322    3 LQERLTGEFENLANEILEEKLEKFQEQNEERLDQLLKPLRETLDEFEKKLEETEKRRAESFGSLSERLEQLDEAQQQLSQ 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 187 EAVNLTNALKgDNKIQGNWGETVLARILESSGLREGHEFETQVSIRHENGSRYQPDVIVHLPHRRDVIIDAKMSLIAYER 266
Cdd:COG1322   83 EVGNLTRALK-NKKTRGNWGEVQLERILEDAGLPEGCEYEEQVSLSNEDGSRLRPDVIVRLPGGKWLVIDAKFPLEAYER 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 267 YFNSSDENEQKQALHAHVNSIRAHIKGLSLKDYHKLPGVTSLDYVLMFIPIEPAYLVAIGHSPDLLEEALKNNIMLVGPS 346
Cdd:COG1322  162 LVEAEDEEEREAALKAHARSVRKHIKDLSEKDYWDLIPPETPDFVLMFLPIEGAYAEALERDPGLIEEAFEKRVVLVSPT 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 347 TLLVALRTIAALWRYEYQSQNAQEIADRAAKMYDKLRLFVDDMQGLGNSIQKAQSGYLLAMKKLSegrGNLISQAEGFKS 426
Cdd:COG1322  242 TLMALLRTVQMGWRQEAQEENASEIAELLGALYDEFGRFGERLEKLGKHLDQAQKDYNQAVGKLT---GNLLRRARKLEE 318
                        330
                 ....*....|...
gi 490366458 427 LGVEIKKTIDNDL 439
Cdd:COG1322  319 LGAEEKKELPELL 331
RmuC pfam02646
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The ...
136-429 1.63e-126

RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures


Pssm-ID: 460637  Cd Length: 286  Bit Score: 367.98  E-value: 1.63e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  136 QGLTHLLSPFREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKMAQEAVNLTNALKgDNKIQGNWGETVLARILE 215
Cdd:pfam02646   1 ERLDQLLKPLREKLEKFLEKVEETEKERSERLASLKEQLGELQELNQQVGDEANNLTRALK-NPKTRGNWGEVQLERILE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  216 SSGLREGHEFETQVSIRHENGsRYQPDVIVHLPHRRDVIIDAKMSLIAYERYFNSSDENEQKQALHAHVNSIRAHIKGLS 295
Cdd:pfam02646  80 QSGLREGCDYETQVSLTDEEG-RLRPDVIVKLPGGKHLVIDSKVPLEAYERYVNAEDDAEREAALKAHARSVRKHIKDLS 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  296 LKDYHKLPgvtSLDYVLMFIPIEPAYLVAIGHSPDLLEEALKNNIMLVGPSTLLVALRTIAALWRYEYQSQNAQEIADRA 375
Cdd:pfam02646 159 SKDYWDLP---SPDFVLMFIPIEGAFAEALERDPGLIEEAFRKNVVLASPTTLLALLRTVAMGWRQEAQNKNAEEIAELA 235
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 490366458  376 AKMYDKLRLFVDDMQGLGNSIQKAQSGYLLAMKKLSegrGNLISQAEGFKSLGV 429
Cdd:pfam02646 236 GELYDRFGKFGEHLEKLGKKLDQAVKSYDKAVGKLE---GNLLRRARKLEELGV 286
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
2-180 4.28e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.74  E-value: 4.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458     2 DIQLLYGIIGLLGGVLVGGIAVWWLIQQRLAEKENLLRENYTQLAVAQQKAL----VIPSLQQQIAHLEQELRAQREIIT 77
Cdd:TIGR02168  727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEIEELEAQIEQLKEELKALREALD 806
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458    78 SQEAELRE-------VTTRWEESRISAEEKQRLLLNSEQRLATQFENLA--NRIFEQSGRKAQELNRQgLTHLLSPfREQ 148
Cdd:TIGR02168  807 ELRAELTLlneeaanLRERLESLERRIAATERRLEDLEEQIEELSEDIEslAAEIEELEELIEELESE-LEALLNE-RAS 884
                          170       180       190
                   ....*....|....*....|....*....|..
gi 490366458   149 LESFRRQVQEGFGQEARERHTLVHEIRQLQQL 180
Cdd:TIGR02168  885 LEEALALLRSELEELSEELRELESKRSELRRE 916
 
Name Accession Description Interval E-value
PRK10361 PRK10361
DNA recombination protein RmuC; Provisional
22-446 0e+00

DNA recombination protein RmuC; Provisional


Pssm-ID: 182409 [Multi-domain]  Cd Length: 475  Bit Score: 570.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  22 AVWWLI------QQR---LAEKENLlrenYTQLAVAQQKALVIPSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEE 92
Cdd:PRK10361  17 AIGWLFasyqhaQQKaeqLAEREEM----VAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEA 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  93 SRISAEEKQRLLLNSEQRLATQFENLANRIFEQSGRKAQELNRQGLTHLLSPFREQLESFRRQVQEGFGQEARERHTLVH 172
Cdd:PRK10361  93 AQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAH 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 173 EIRQLQQLNVKMAQEAVNLTNALKGDNKIQGNWGETVLARILESSGLREGHEFETQVSIRHENGSRYQPDVIVHLPHRRD 252
Cdd:PRK10361 173 EIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGYEYETQVSIENDARSRMQPDVIVRLPQGKD 252
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 253 VIIDAKMSLIAYERYFNSSDENEQKQALHAHVNSIRAHIKGLSLKDYHKLPGVTSLDYVLMFIPIEPAYLVAIGHSPDLL 332
Cdd:PRK10361 253 VVIDAKMTLVAYERYFNAEDDYTRESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELI 332
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 333 EEALKNNIMLVGPSTLLVALRTIAALWRYEYQSQNAQEIADRAAKMYDKLRLFVDDMQGLGNSIQKAQSGYLLAMKKLSE 412
Cdd:PRK10361 333 TEALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSS 412
                        410       420       430
                 ....*....|....*....|....*....|....
gi 490366458 413 GRGNLISQAEGFKSLGVEIKKTIDNDLVEKSASD 446
Cdd:PRK10361 413 GRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQ 446
RmuC COG1322
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ...
107-439 1.60e-146

DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];


Pssm-ID: 440933  Cd Length: 342  Bit Score: 421.11  E-value: 1.60e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 107 SEQRLATQFENLANRIFEQSGRKAQELNRQGLTHLLSPFREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKMAQ 186
Cdd:COG1322    3 LQERLTGEFENLANEILEEKLEKFQEQNEERLDQLLKPLRETLDEFEKKLEETEKRRAESFGSLSERLEQLDEAQQQLSQ 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 187 EAVNLTNALKgDNKIQGNWGETVLARILESSGLREGHEFETQVSIRHENGSRYQPDVIVHLPHRRDVIIDAKMSLIAYER 266
Cdd:COG1322   83 EVGNLTRALK-NKKTRGNWGEVQLERILEDAGLPEGCEYEEQVSLSNEDGSRLRPDVIVRLPGGKWLVIDAKFPLEAYER 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 267 YFNSSDENEQKQALHAHVNSIRAHIKGLSLKDYHKLPGVTSLDYVLMFIPIEPAYLVAIGHSPDLLEEALKNNIMLVGPS 346
Cdd:COG1322  162 LVEAEDEEEREAALKAHARSVRKHIKDLSEKDYWDLIPPETPDFVLMFLPIEGAYAEALERDPGLIEEAFEKRVVLVSPT 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 347 TLLVALRTIAALWRYEYQSQNAQEIADRAAKMYDKLRLFVDDMQGLGNSIQKAQSGYLLAMKKLSegrGNLISQAEGFKS 426
Cdd:COG1322  242 TLMALLRTVQMGWRQEAQEENASEIAELLGALYDEFGRFGERLEKLGKHLDQAQKDYNQAVGKLT---GNLLRRARKLEE 318
                        330
                 ....*....|...
gi 490366458 427 LGVEIKKTIDNDL 439
Cdd:COG1322  319 LGAEEKKELPELL 331
RmuC pfam02646
RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The ...
136-429 1.63e-126

RmuC family; This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures


Pssm-ID: 460637  Cd Length: 286  Bit Score: 367.98  E-value: 1.63e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  136 QGLTHLLSPFREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKMAQEAVNLTNALKgDNKIQGNWGETVLARILE 215
Cdd:pfam02646   1 ERLDQLLKPLREKLEKFLEKVEETEKERSERLASLKEQLGELQELNQQVGDEANNLTRALK-NPKTRGNWGEVQLERILE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  216 SSGLREGHEFETQVSIRHENGsRYQPDVIVHLPHRRDVIIDAKMSLIAYERYFNSSDENEQKQALHAHVNSIRAHIKGLS 295
Cdd:pfam02646  80 QSGLREGCDYETQVSLTDEEG-RLRPDVIVKLPGGKHLVIDSKVPLEAYERYVNAEDDAEREAALKAHARSVRKHIKDLS 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  296 LKDYHKLPgvtSLDYVLMFIPIEPAYLVAIGHSPDLLEEALKNNIMLVGPSTLLVALRTIAALWRYEYQSQNAQEIADRA 375
Cdd:pfam02646 159 SKDYWDLP---SPDFVLMFIPIEGAFAEALERDPGLIEEAFRKNVVLASPTTLLALLRTVAMGWRQEAQNKNAEEIAELA 235
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 490366458  376 AKMYDKLRLFVDDMQGLGNSIQKAQSGYLLAMKKLSegrGNLISQAEGFKSLGV 429
Cdd:pfam02646 236 GELYDRFGKFGEHLEKLGKKLDQAVKSYDKAVGKLE---GNLLRRARKLEELGV 286
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
27-186 1.13e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.54  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  27 IQQRLAEKENLLRENYTQLAVAQQKalvIPSLQQQIAHLEQELRAQREIITSQEAELREvttrWEESRISAEEKQRLLLN 106
Cdd:COG1196  272 LRLELEELELELEEAQAEEYELLAE---LARLEQDIARLEERRRELEERLEELEEELAE----LEEELEELEEELEELEE 344
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 107 SEQRLATQFENLANRIfEQSGRKAQELNRQglthlLSPFREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKMAQ 186
Cdd:COG1196  345 ELEEAEEELEEAEAEL-AEAEEALLEAEAE-----LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
22-195 2.20e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.75  E-value: 2.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458   22 AVWWLIQQRLAEKENLLRENYTQLAvaqqkalvipSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEES---RISAE 98
Cdd:COG4913   281 LRLWFAQRRLELLEAELEELRAELA----------RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQlerEIERL 350
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458   99 EKQRLLLnseQRLATQFENLANRIFEQSGRKAQEL--NRQGLTHLLSPFREQLESFRRQVQEGFGQEA---RERHTLVHE 173
Cdd:COG4913   351 ERELEER---ERRRARLEALLAALGLPLPASAEEFaaLRAEAAALLEALEEELEALEEALAEAEAALRdlrRELRELEAE 427
                         170       180
                  ....*....|....*....|..
gi 490366458  174 IRQLQQLNVKMAQEAVNLTNAL 195
Cdd:COG4913   428 IASLERRKSNIPARLLALRDAL 449
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
2-180 4.28e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.74  E-value: 4.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458     2 DIQLLYGIIGLLGGVLVGGIAVWWLIQQRLAEKENLLRENYTQLAVAQQKAL----VIPSLQQQIAHLEQELRAQREIIT 77
Cdd:TIGR02168  727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEIEELEAQIEQLKEELKALREALD 806
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458    78 SQEAELRE-------VTTRWEESRISAEEKQRLLLNSEQRLATQFENLA--NRIFEQSGRKAQELNRQgLTHLLSPfREQ 148
Cdd:TIGR02168  807 ELRAELTLlneeaanLRERLESLERRIAATERRLEDLEEQIEELSEDIEslAAEIEELEELIEELESE-LEALLNE-RAS 884
                          170       180       190
                   ....*....|....*....|....*....|..
gi 490366458   149 LESFRRQVQEGFGQEARERHTLVHEIRQLQQL 180
Cdd:TIGR02168  885 LEEALALLRSELEELSEELRELESKRSELRRE 916
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
47-186 8.71e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 41.65  E-value: 8.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458   47 VAQQKALVIPSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEESRISAEEKQRLLLNSEQRLATQFENLANRI-FEQ 125
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIrQEE 357
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490366458  126 SGRKAQELNRQGLTHLLSPFR--EQLESFRRQVQEGFGQ--EARERHTLVHEIRQ--LQQLNVKMAQ 186
Cdd:pfam17380 358 RKRELERIRQEEIAMEISRMRelERLQMERQQKNERVRQelEAARKVKILEEERQrkIQQQKVEMEQ 424
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
27-196 1.57e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  27 IQQRLAEKENLLRENYTQLAvaqqkalvipSLQQQIAHLEQELRAQREIITSQEAELREVttrweESRISAEEKQRLLLn 106
Cdd:COG4942   32 LQQEIAELEKELAALKKEEK----------ALLKQLAALERRIAALARRIRALEQELAAL-----EAELAELEKEIAEL- 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 107 sEQRLATQFENLANRIfeqsgRKAQELNRQGLTHLLSPFREQLESFRRQVQEGFGQEARERH--TLVHEIRQLQQLNVKM 184
Cdd:COG4942   96 -RAELEAQKEELAELL-----RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQaeELRADLAELAALRAEL 169
                        170
                 ....*....|..
gi 490366458 185 AQEAVNLTNALK 196
Cdd:COG4942  170 EAERAELEALLA 181
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
28-212 5.48e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.15  E-value: 5.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  28 QQRLAEKENLLRENYTQLAvAQQKALVIPSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEESRISAEEKQRLL--- 104
Cdd:COG1196  208 QAEKAERYRELKEELKELE-AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELeea 286
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458 105 LNSEQRLATQFENLANRIFEQSGRKAQELNRqglthllspfREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKM 184
Cdd:COG1196  287 QAEEYELLAELARLEQDIARLEERRRELEER----------LEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
                        170       180
                 ....*....|....*....|....*...
gi 490366458 185 AQEAVNLTNALKGDNKIQGNWGETVLAR 212
Cdd:COG1196  357 EAELAEAEEALLEAEAELAEAEEELEEL 384
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
28-196 5.55e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.27  E-value: 5.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458    28 QQRLAEKENLLRENYTQLAVAQQKALvipSLQQQIAHLEQELRAQREIITSQEAELREVTTRWEESRISAEEKQRLLLNS 107
Cdd:TIGR02168  266 EEKLEELRLEVSELEEEIEELQKELY---ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458   108 EQR---LATQFENLANRiFEQSGRKAQELNRQglthlLSPFREQLESFRRQVQEGFGQEARERHTLVHEIRQLQQLNVKM 184
Cdd:TIGR02168  343 EEKleeLKEELESLEAE-LEELEAELEELESR-----LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
                          170
                   ....*....|..
gi 490366458   185 AQEAVNLTNALK 196
Cdd:TIGR02168  417 ERLQQEIEELLK 428
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
27-170 6.29e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.15  E-value: 6.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  27 IQQRLAEKENLLRENYTQLAVAQQKALVipsLQQQIAHLEQEL--------RAQREIITSQEAELREVTTRwEESRISAE 98
Cdd:COG1196  370 AEAELAEAEEELEELAEELLEALRAAAE---LAAQLEELEEAEeallerleRLEEELEELEEALAELEEEE-EEEEEALE 445
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490366458  99 EKQRLLLNSEQRLATQFENLANRIFEQSGRKAQELNRQGLTHLLSPfREQLESFRRQVQEGFGQEARERHTL 170
Cdd:COG1196  446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA-RLLLLLEAEADYEGFLEGVKAALLL 516
PRK15178 PRK15178
Vi polysaccharide ABC transporter inner membrane protein VexD;
28-171 7.05e-03

Vi polysaccharide ABC transporter inner membrane protein VexD;


Pssm-ID: 185100  Cd Length: 434  Bit Score: 38.57  E-value: 7.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490366458  28 QQRLAEKENLLRENYTQLAVAQQKALVIPSLQQQIAHLEQeLRAQREIITSQEAELREVTTRWEESRISAEEKQRLLlns 107
Cdd:PRK15178 241 KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKET-ITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLI--- 316
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490366458 108 eQRLATQFENLANRIFEQSGRKAQELNRQGLTHLLSPFRE----------QLESFRRQVQEGFGQEARERHTLV 171
Cdd:PRK15178 317 -PRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDlrlqseiakaRWESALQTLQQGKLQALRERQYLL 389
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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