|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
9-302 |
3.22e-139 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 395.57 E-value: 3.22e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 9 QLNHGRKVYDFMRWDYWAFAISGLLLVASIVVMGVRGFNWGLDFTGGTVIEIGLEKPADLDVMRESLVKAGFEEPLLQNF 88
Cdd:COG0341 1 RLFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 89 GSSRDIMVRMPPAQGEtgGQALGTKVVNVINQATGqNAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWR 168
Cdd:COG0341 81 GSDNDVLIRTPPLDGE--SAEEVEKVRAALKEAFG-DVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 169 LAAGVVIALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRT 248
Cdd:COG0341 158 FAVGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRT 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 490522333 249 LITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALALKLGMK 302
Cdd:COG0341 238 INTSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
45-292 |
2.46e-107 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 313.05 E-value: 2.46e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 45 GFNWGLDFTGGTVIEIGLEKPADLDVMRESLVKAGFEEPLLQNFGSSRDIMVRMPPAQGETGGQaLGTKVVNVINQATgQ 124
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSEE-LREALEEALKNVD-P 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 125 NAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIITMGVLSLFQIEIDLTIIASLM 204
Cdd:TIGR00966 79 DAEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 205 SVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIG 284
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238
|
....*...
gi 490522333 285 TASSIYVA 292
Cdd:TIGR00966 239 TYSSIFIA 246
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
17-303 |
4.63e-95 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 297.53 E-value: 4.63e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 17 YDFMRWDYWAFAISGLLLVASIVVMGVRGFNWGLDFTGGTVIEIGLEKPADLDVMRESLVKAGFEEPLLQNFGS-SRDIM 95
Cdd:PRK13024 449 IDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNNQVL 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 96 VRMPPAQ--GETGGQALGTKVVNVINQATGQNaaVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGV 173
Cdd:PRK13024 529 VRTYGILsdDEEADTEIVAKLKNALKNDKGGT--IPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGA 606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 174 VIALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRTLITSG 253
Cdd:PRK13024 607 ILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSL 686
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 490522333 254 TTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303
Cdd:PRK13024 687 TTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRR 736
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
114-302 |
7.51e-79 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 238.27 E-value: 7.51e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 114 VVNVINQATGQNAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIITMGVLSLFQI 193
Cdd:pfam02355 1 VVEALLKNVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 194 EIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRTLITSGTTLVVILMLYLFGGAMLQGF 273
Cdd:pfam02355 81 EVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDF 160
|
170 180
....*....|....*....|....*....
gi 490522333 274 SLTMLIGVSIGTASSIYVASALALKLGMK 302
Cdd:pfam02355 161 SLALLVGVIVGTYSSIFIASPILLDLGER 189
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
116-305 |
1.81e-08 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 55.94 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 116 NVINQAT-GQNAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFewRLAA--GVVIALAhDVIITMGVLSLFQ 192
Cdd:NF037998 416 ALINQTTsGFTFKVNGISEFNPVVTLLMLIASIIFLLILAIAIMIYLLFAY--RLLGlfAIIIALT-SISLTLYSPTWFG 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 193 IEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPyEIFNVSLTQTLqrTLITSGTTLVVILMLYLF--GGAML 270
Cdd:NF037998 493 LAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNKRSIE-ESFKIANKETI--GIIVDALVVLLIPNLSLFwiGSNSI 569
|
170 180 190
....*....|....*....|....*....|....*...
gi 490522333 271 QGFSLTMLIGVSIGTASSIYVA---SALALKLGMKREH 305
Cdd:NF037998 570 KSFATILLVGVIISLVLVIIVArlmIWLTIKLQWFKKY 607
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
147-224 |
1.45e-06 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 49.78 E-value: 1.45e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490522333 147 AMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIREN 224
Cdd:NF037998 960 AISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAKSL 1037
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
9-302 |
3.22e-139 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 395.57 E-value: 3.22e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 9 QLNHGRKVYDFMRWDYWAFAISGLLLVASIVVMGVRGFNWGLDFTGGTVIEIGLEKPADLDVMRESLVKAGFEEPLLQNF 88
Cdd:COG0341 1 RLFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 89 GSSRDIMVRMPPAQGEtgGQALGTKVVNVINQATGqNAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWR 168
Cdd:COG0341 81 GSDNDVLIRTPPLDGE--SAEEVEKVRAALKEAFG-DVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 169 LAAGVVIALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRT 248
Cdd:COG0341 158 FAVGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRT 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 490522333 249 LITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALALKLGMK 302
Cdd:COG0341 238 INTSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
45-292 |
2.46e-107 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 313.05 E-value: 2.46e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 45 GFNWGLDFTGGTVIEIGLEKPADLDVMRESLVKAGFEEPLLQNFGSSRDIMVRMPPAQGETGGQaLGTKVVNVINQATgQ 124
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSEE-LREALEEALKNVD-P 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 125 NAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIITMGVLSLFQIEIDLTIIASLM 204
Cdd:TIGR00966 79 DAEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 205 SVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIG 284
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238
|
....*...
gi 490522333 285 TASSIYVA 292
Cdd:TIGR00966 239 TYSSIFIA 246
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
17-303 |
4.63e-95 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 297.53 E-value: 4.63e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 17 YDFMRWDYWAFAISGLLLVASIVVMGVRGFNWGLDFTGGTVIEIGLEKPADLDVMRESLVKAGFEEPLLQNFGS-SRDIM 95
Cdd:PRK13024 449 IDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNNQVL 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 96 VRMPPAQ--GETGGQALGTKVVNVINQATGQNaaVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGV 173
Cdd:PRK13024 529 VRTYGILsdDEEADTEIVAKLKNALKNDKGGT--IPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGA 606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 174 VIALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRTLITSG 253
Cdd:PRK13024 607 ILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSL 686
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 490522333 254 TTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303
Cdd:PRK13024 687 TTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRR 736
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
114-302 |
7.51e-79 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 238.27 E-value: 7.51e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 114 VVNVINQATGQNAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIITMGVLSLFQI 193
Cdd:pfam02355 1 VVEALLKNVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 194 EIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRTLITSGTTLVVILMLYLFGGAMLQGF 273
Cdd:pfam02355 81 EVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDF 160
|
170 180
....*....|....*....|....*....
gi 490522333 274 SLTMLIGVSIGTASSIYVASALALKLGMK 302
Cdd:pfam02355 161 SLALLVGVIVGTYSSIFIASPILLDLGER 189
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
19-295 |
5.68e-77 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 251.95 E-value: 5.68e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 19 FMRWDYWAFAISGLLLVASIVVMGVRGFNWGLDFTGGTVIEIGLEK-PADLDVMRESLVKAGFEEPLLQNFGSSRDIMVR 97
Cdd:PRK14726 549 FMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQgNADIADIRARLNELNLGEVQVERFGSPRDALIR 628
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 98 MP-PAQGETGGQALGTKVvnviNQATGQNAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIA 176
Cdd:PRK14726 629 IAsQDGGENAEQSAVTLV----RGELEDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQFAVGAIIA 704
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 177 LAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRTLITSGTTL 256
Cdd:PRK14726 705 TLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTSATTL 784
|
250 260 270
....*....|....*....|....*....|....*....
gi 490522333 257 VVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASAL 295
Cdd:PRK14726 785 LALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPV 823
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
21-305 |
2.50e-72 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 225.50 E-value: 2.50e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 21 RWDYWAFAISGLLLVASIVVMGVRGFNWGLDFTGGTVIEIGLEKPADLDVMRESLVKAGFEEPLLQNFGSSRDIMVRMPP 100
Cdd:PRK13021 8 KWRYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSVISASEPGRWVLRYAP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 101 AQGETGGQALGTKVVNVINQATGQNAAVkriefVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIALAHD 180
Cdd:PRK13021 88 ADTAQSNVDIQQALAPLGTEVQVLNSSI-----VGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 181 VIITMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRTLITSGTTLVVIL 260
Cdd:PRK13021 163 VIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVG 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 490522333 261 MLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALALKLGMKREH 305
Cdd:PRK13021 243 ALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEH 287
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
131-289 |
2.97e-58 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 185.92 E-value: 2.97e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 131 IEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYS 210
Cdd:TIGR00916 34 VGTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYS 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490522333 211 LNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSI 289
Cdd:TIGR00916 114 VDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
19-302 |
6.23e-46 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 165.95 E-value: 6.23e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 19 FMRWDYWAFAISGLLLVASIVVMGVRGFNWGLDFTGGTVIEIGLEK-PADLDVMRESLVKAGFEEPLLQNFGSSRDIMVR 97
Cdd:PRK13023 455 FMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNgDANLEDINERLAELNIDSARVLPAKSPRSALVI 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 98 MppAQGETGGQALGTKVVNVINQATgQNAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIAL 177
Cdd:PRK13023 535 I--GSQEVGDDAEQTVAVKLRGEFE-QDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLST 611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 178 AHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLQRTLITSGTTLV 257
Cdd:PRK13023 612 LHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFL 691
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 490522333 258 VILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALALKLGMK 302
Cdd:PRK13023 692 AHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
17-304 |
3.45e-38 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 144.23 E-value: 3.45e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 17 YDFMRWDYWAFAISGLLLVASIVVMGVRGFN--WGLDFTGGTVIEIGL--EKPADLDVMRESLVKAgFEEPLL------- 85
Cdd:PRK12911 1081 HDFLKECKRLWVVSGSVLVLGCVALGFGAWNsvLGMDFKGGYALTLDPsdVCEYDVEQMRSKLRKK-FQQIGLssrdfri 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 86 QNFGSSRDI--------MVRMPPAQG---ETGGQALgTKVVNVINQaTG-----------QNAAVKriefVGPSVGADLA 143
Cdd:PRK12911 1160 RTFDSSEKIkiyfsqnaLDRVEAIEGagsEQSDHHL-ALVLGVLSD-TGsdtssevfdatQNFWFK----VSGQLSNKMR 1233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 144 QAGAMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIITMGVLS-----LFQIEIDLTIIASLMSVIGYSLNDSIVVS 218
Cdd:PRK12911 1234 TQAVIALFGALGIILLYVSLRFEWRYAFSAICALIHDLLATCAVLValhffLQKIQIDLQAIGALMTVLGYSLNNTLIIF 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 219 DRIRENfRKIRRGTPYEIF-NVSLTQTLQRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALAL 297
Cdd:PRK12911 1314 DRIRED-RQEKLFTPMPILiNDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLL 1392
|
....*..
gi 490522333 298 KLGMKRE 304
Cdd:PRK12911 1393 FMVRKEE 1399
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
27-265 |
4.16e-17 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 79.98 E-value: 4.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 27 FAISGLLLVASIVVMGvRGFNWGLDFTGGTVIEIGLEkPADLDVMRESLvkagFEEPLL-QNFGSSRDIMVRMPPAQGET 105
Cdd:PRK08578 24 LLLSLLLLGGTFATTG-SPVKLGIDFTGGTEITIQTN-DASPDELESAL----SGEPGVdVRKGSGNGYIITFGSGDDTD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 106 GGQAlgTKVVNVINQATGQNAAVKRIEFVGPSVGADLAQAGAMALLVALL--SILVYVGFRfEWRLAAGVVIALAHDVII 183
Cdd:PRK08578 98 VDKL--ADAVKEFFNVDSISELNYSEKQIGPTFGSQFQEQALKAVGFAFIgmAVVVFLIFR-TPVPSLAVILSAFSDIII 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 184 TMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIREnfrkiRRGTPYEIFNVSLtqtlqRTLIT-SGTTLVVILML 262
Cdd:PRK08578 175 ALALMNLFGIELSLATVAALLMLIGYSVDSDILLTTRVLK-----RRGTFDESIKRAM-----RTGITmTLTTIAAMAVL 244
|
...
gi 490522333 263 YLF 265
Cdd:PRK08578 245 YIV 247
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
134-295 |
4.11e-16 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 78.10 E-value: 4.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 134 VGPSVGADLAQAGAMALLVALLSILVYVGFRFEWrlaAGVV--IALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSL 211
Cdd:TIGR01129 238 IGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL---FGLIaaIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAV 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 212 NDSIVVSDRIRENFRKIRrgTPYEIFNVSLTQTLQRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYV 291
Cdd:TIGR01129 315 DANVLIYERIKEELRLGK--SVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVF 392
|
....
gi 490522333 292 ASAL 295
Cdd:TIGR01129 393 TRLL 396
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
134-291 |
5.13e-15 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 75.15 E-value: 5.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 134 VGPSVGADLAQAGAMALLVALLSILVYVGFRF-EWRLAAgvVIALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSLN 212
Cdd:COG0342 261 VGPTLGADSIEKGLIAGLIGLLLVALFMLLYYrLPGLVA--NIALALNVVLLLGVLSLLGATLTLPGIAGIILTIGMAVD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 213 DSIVVSDRIREnfrKIRRGtpyeifnVSLTQTLQ-------RTLITS-GTTLVVILMLYLFGGAMLQGFSLTMLIGVSIG 284
Cdd:COG0342 339 ANVLIFERIRE---ELRAG-------RSLRAAIEagfkrafSTILDAnVTTLIAAVVLFVLGTGPVKGFAVTLILGILIS 408
|
....*..
gi 490522333 285 TASSIYV 291
Cdd:COG0342 409 MFTAVPV 415
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
132-307 |
1.15e-13 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 71.42 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 132 EFVGPSVGADLAQAGAMALLVALLSILVYVGFRFewRLAaGVV--IALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGY 209
Cdd:PRK13024 254 RSVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYY--GLP-GLIanIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGM 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 210 SLNDSIVVSDRIRENFRK-------IRRGtpyeiFNVSLtqtlqRTLITSG-TTLVVILMLYLFGGAMLQGFSLTMLIGV 281
Cdd:PRK13024 331 AVDANVLIFERIKEELRKgkslkkaFKKG-----FKNAF-----STILDSNiTTLIAAAILFFFGTGPVKGFATTLIIGI 400
|
170 180
....*....|....*....|....*.
gi 490522333 282 SIGTASSIYVASALALKLGMKREHLL 307
Cdd:PRK13024 401 LASLFTAVFLTRLLLELLVKRGDKKP 426
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
126-292 |
1.55e-12 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 67.94 E-value: 1.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 126 AAVKRIE--FVGPSVGADLAQAGAMALLVALLSILVYVGFRFewRLAaGVV--IALAHDVIITMGVLSLFQIEIDLTIIA 201
Cdd:PRK05812 277 APLEIVEerTIGPSLGADSIRAGLIAGLIGLALVLLFMILYY--RLF-GLIanIALVANLVLILAVLSLLGATLTLPGIA 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 202 SLMSVIGYSLNDSIVVSDRIREnfrKIRRGtpyeifnVSLTQTLQ-------RTLITS-GTTLVVILMLYLFGGAMLQGF 273
Cdd:PRK05812 354 GIVLTIGMAVDANVLIFERIRE---ELREG-------RSLRSAIEagfkrafSTILDSnITTLIAAIILYALGTGPVKGF 423
|
170
....*....|....*....
gi 490522333 274 SLTMligvSIGTASSIYVA 292
Cdd:PRK05812 424 AVTL----GIGILTSMFTA 438
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
128-284 |
6.90e-12 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 65.67 E-value: 6.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 128 VKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRF-EWRLAAGVVIALAHDVIITMGVLSLFQIEIDLTIIASLMSV 206
Cdd:PRK08343 245 IEGSGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYrEPRIALPMVITSLSEVIIILGFAALIGWQLDLASIAGIIAV 324
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490522333 207 IGYSLNDSIVVSDRIRENFRKIRRGtpyeIFNVSLTQTLQRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIG 284
Cdd:PRK08343 325 IGTGVDDLIIITDEVLHEGKVPSRK----VFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGVLIG 398
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
134-281 |
8.16e-11 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 62.82 E-value: 8.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 134 VGPSVGADLAQAGAMALLVA--LLSILVYVGFRFEWRLAagvVIALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSL 211
Cdd:PRK14726 362 VGPGLGADSIAAGLVAGLIAaiLVAALMIGFYGFLGVIA---VIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAV 438
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490522333 212 NDSIVVSDRIRENFRKIRrgTPYEIFNVSLTQTLqRTLITSG-TTLVVILMLYLFGGAMLQGFSLTMLIGV 281
Cdd:PRK14726 439 DSNVLIYERIREEEKTGH--SLIQALDRGFSRAL-ATIVDANvTILIAAVILFFLGSGAVRGFAVTLAVGI 506
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
108-281 |
1.16e-10 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 62.33 E-value: 1.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 108 QALGTKVVNVINQATGQNAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWrLAAGVVIALAHDVIITMGV 187
Cdd:PRK13023 242 QAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGI-LGVIALVALVVNIIILTAV 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 188 LSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKirRGTPYEIFNVSLTQTLQRTLITSGTTLVVILMLYLFGG 267
Cdd:PRK13023 321 LSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRK--GYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGS 398
|
170
....*....|....
gi 490522333 268 AMLQGFSLTMLIGV 281
Cdd:PRK13023 399 GTVHGFALTVAIGI 412
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
65-304 |
1.20e-10 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 62.57 E-value: 1.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 65 PADLDVMRESLVKagfeEPLLQNFGSSRD-----IMVRM--PPAQGETGGQALGTKVVNVINQATGQNAavkRIEFVG-P 136
Cdd:COG1033 134 PEELAELREKVLS----SPLYVGRLVSPDgkatlIVVTLdpDPLSSDLDRKEVVAEIRAIIAKYEDPGV---EVYLTGfP 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 137 SVGADLAQAGA------MALLVALLSILVYVGFR-FEWRLAAGVVIALAhdVIITMGVLSLFQIEIDL--TIIASLMSVI 207
Cdd:COG1033 207 VLRGDIAEAIQsdlaifFPLALLLILLLLFLFFRsLRGVLLPLLVVLLA--VIWTLGLMGLLGIPLSPltILVPPLLLAI 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 208 GysLNDSIVVSDRIRENFRkiRRGTPYEIFNVSLTQTLQRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTAS 287
Cdd:COG1033 285 G--IDYGIHLLNRYREERR--KGLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLT 360
|
250
....*....|....*..
gi 490522333 288 SIYVASALALKLGMKRE 304
Cdd:COG1033 361 SLTLLPALLSLLPRPKP 377
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
116-305 |
1.81e-08 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 55.94 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 116 NVINQAT-GQNAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFewRLAA--GVVIALAhDVIITMGVLSLFQ 192
Cdd:NF037998 416 ALINQTTsGFTFKVNGISEFNPVVTLLMLIASIIFLLILAIAIMIYLLFAY--RLLGlfAIIIALT-SISLTLYSPTWFG 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 193 IEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPyEIFNVSLTQTLqrTLITSGTTLVVILMLYLF--GGAML 270
Cdd:NF037998 493 LAIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNKRSIE-ESFKIANKETI--GIIVDALVVLLIPNLSLFwiGSNSI 569
|
170 180 190
....*....|....*....|....*....|....*...
gi 490522333 271 QGFSLTMLIGVSIGTASSIYVA---SALALKLGMKREH 305
Cdd:NF037998 570 KSFATILLVGVIISLVLVIIVArlmIWLTIKLQWFKKY 607
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
40-66 |
3.35e-07 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 45.74 E-value: 3.35e-07
10 20
....*....|....*....|....*..
gi 490522333 40 VMGVRGFNWGLDFTGGTVIEIGLEKPA 66
Cdd:pfam07549 1 SLFTRGLNLGLDFTGGTVIELQFDQPV 27
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
148-315 |
9.57e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 50.22 E-value: 9.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 148 MALLVALLSILVYVGFRFEWRLAAGVVIALAhDVIITMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRK 227
Cdd:TIGR00921 199 MAISGILVVLVLLLDFKRWWRPLLPLVIILF-GVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDI 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 228 IRrgTPYEIFNVSLTQTLQRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALALKLGMKREHLL 307
Cdd:TIGR00921 278 GR--AKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPALLQSIDIGREKVK 355
|
....*...
gi 490522333 308 QQKVEKEG 315
Cdd:TIGR00921 356 KEIIAIGG 363
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
147-224 |
1.45e-06 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 49.78 E-value: 1.45e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490522333 147 AMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIREN 224
Cdd:NF037998 960 AISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAKSL 1037
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
134-295 |
6.22e-05 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 44.68 E-value: 6.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 134 VGPSVGADLAQAGAMALLVALLSILVYVGFRFEwRLAAGVVIALAHDVIITMGVLSLFQIEIdLTI--IASLMSVIGYSL 211
Cdd:PRK12933 430 IGPSLGAENIENGFAALALGMGITLLFMALWYR-RLGWVANVALIANMVCLFGLLALIPGAV-LTLpgIAGLVLTVGMAV 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 212 NDSIVVSDRIREnfrKIRRGTpyeifnvSLTQTLQR-------TLITSG-TTLVVILMLYLFGGAMLQGFSLTMLIGVSI 283
Cdd:PRK12933 508 DTNVLIFERIKD---KLKEGR-------SFAQAIDTgfdsafsTIFDANfTTMITAVVLYSIGNGPIQGFALTLGLGLLT 577
|
170
....*....|..
gi 490522333 284 GTASSIYVASAL 295
Cdd:PRK12933 578 SMFTGIFASRAL 589
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
132-292 |
4.57e-04 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 42.15 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 132 EFVGPSVGADLAQAGAMALL--VALLSILVYVGFRFEWRLAAGVVIAlahDVIITMGVLSLFQIEIDLTIIASLMSVIGY 209
Cdd:PRK12911 897 EVISPELGKSQRTQGIISVClgLAVLIVLMSVYYRFGGVIASGAVLL---NLLLIWAALQYLDAPLTLSGLAGIVLAMGM 973
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 210 SLNDSIVVSDRIRENFrkirrgtpyeIFNVSLTQTLQR-------TLITSG-TTLVVILMLYLFGGAMLQGFSLTMLIGV 281
Cdd:PRK12911 974 AVDANVLVFERIREEY----------LLSRSLSESVEAgykkafsAIFDSNlTTILASALLLMLDTGPIKGFALTLIIGI 1043
|
170
....*....|.
gi 490522333 282 sigtASSIYVA 292
Cdd:PRK12911 1044 ----FSSMFTA 1050
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
150-281 |
5.47e-04 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 41.76 E-value: 5.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 150 LLVALLSILVYVGFR-FEWRLAAGVVIALAHDVIITMGVLSLFQIEIDL-TIIASLMsVIGYSLNDSIvvsdrirenFrk 227
Cdd:COG4258 645 LLLALLLILLLLLLRlRSLRRALRVLLPPLLAVLLTLAILGLLGIPLNLfHLIALLL-VLGIGIDYAL---------F-- 712
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 490522333 228 IRRGTPYEifnVSLTQTLQRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGV 281
Cdd:COG4258 713 FTEGLLDK---GELARTLLSILLAALTTLLGFGLLAFSSTPALRSFGLTVLLGI 763
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
150-305 |
3.62e-03 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 39.20 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 150 LLVALLSILVYVGFRFEWRLAAGVVIALAHDVIITMGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVV----SDRIRENF 225
Cdd:pfam00873 338 LEAIVLVILVMFLFLQNWRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLVLAIGLVVDDAIVVveniERVLEENG 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490522333 226 RKIRRGTPYEifnvslTQTLQRTLITSGTTLVVIL--MLYLFG--GAMLQGFSLTmligVSIGTASSIYVA-------SA 294
Cdd:pfam00873 418 LKPLEAAYKS------MGEIGGALVAIALVLSAVFlpILFLGGltGRIFRQFAIT----IVLAILLSVLVAltltpalCA 487
|
170
....*....|.
gi 490522333 295 LALKLGMKREH 305
Cdd:pfam00873 488 TLLKPRREPKH 498
|
|
| |
