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Conserved domains on  [gi|490523167|ref|WP_004388574|]
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MULTISPECIES: sulfate/thiosulfate ABC transporter permease CysT [Cronobacter]

Protein Classification

sulfate/thiosulfate ABC transporter permease CysT( domain architecture ID 10793513)

sulfate/thiosulfate ABC transporter permease CysT is part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
1-276 3.60e-164

sulfate/thiosulfate ABC transporter permease CysT;


:

Pssm-ID: 182873  Cd Length: 277  Bit Score: 456.14  E-value: 3.60e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   1 MFAVSKRVLPGFTLSLGTSLLFVCLVLLLPLSALVMQLSQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLM 80
Cdd:PRK10971   2 LAVSSKRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLM 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  81 AWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQP 160
Cdd:PRK10971  82 AWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQP 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 161 VLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFD 240
Cdd:PRK10971 162 VLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFD 241

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 490523167 241 YPAASAIASVILAASLLLLFAINTLQSRFGRRVVGH 276
Cdd:PRK10971 242 YPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH 277
 
Name Accession Description Interval E-value
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
1-276 3.60e-164

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 456.14  E-value: 3.60e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   1 MFAVSKRVLPGFTLSLGTSLLFVCLVLLLPLSALVMQLSQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLM 80
Cdd:PRK10971   2 LAVSSKRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLM 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  81 AWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQP 160
Cdd:PRK10971  82 AWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQP 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 161 VLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFD 240
Cdd:PRK10971 162 VLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFD 241

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 490523167 241 YPAASAIASVILAASLLLLFAINTLQSRFGRRVVGH 276
Cdd:PRK10971 242 YPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH 277
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 5-271 1.68e-112

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 324.78  E-value: 1.68e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   5 SKRVLPGFTLSLGTSLLFVCLVLLLPLSALVMQLSQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWIL 84
Cdd:COG0555    2 SRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  85 TRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEE 164
Cdd:COG0555   82 VRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEE 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 165 LGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAA 244
Cdd:COG0555  162 LDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGA 241

                        250       260
                 ....*....|....*....|....*..
gi 490523167 245 SAIASVILAASLLLLFAINTLQSRFGR 271
Cdd:COG0555  242 TAIALVLLLISFLLLLLINLLQRRSRR 268
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 8-272 3.82e-108

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 313.88  E-value: 3.82e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167    8 VLPGFTLSLGTSLLFVCLVLLLPLSALVMQLSQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRY 87
Cdd:TIGR02139   1 VLPGFGLSLGVTLTYLSLIVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   88 RFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGP 167
Cdd:TIGR02139  81 RFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  168 EYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAI 247
Cdd:TIGR02139 161 ELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFQKLEQYDYAGATAI 240

                         250       260
                  ....*....|....*....|....*
gi 490523167  248 ASVILAASLLLLFAINTLQSRFGRR 272
Cdd:TIGR02139 241 ASVMLIISFVILLFINLLQWWALRY 265
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 61-251 3.98e-26

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 101.20  E-value: 3.98e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  61 VTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFygewlakFDIKVTYTWL 140
Cdd:cd06261    3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG-------WGILPGLGLP 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 141 GIAVAMAFTsIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGN 220
Cdd:cd06261   76 ALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                        170       180       190
                 ....*....|....*....|....*....|.
gi 490523167 221 IAWKTEVTSLMIFVRLQEFDYPAASAIASVI 251
Cdd:cd06261  155 EAPGPGTGLLLIFAILFPGDLGVAAAVALIL 185
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 60-240 4.33e-16

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 74.12  E-value: 4.33e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  60 KVTLLSAAVASLFNGAFGLLMAWiltrYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWlakfdiKVTYTW 139
Cdd:NF038017   3 RVSGTATLIAALIGIPLGALLAL----RRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL------GLLYTP 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 140 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRkVVLPELSPALMAGVALSFTRSLGEFGAVIFIAG 219
Cdd:NF038017  73 TAMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW-TLLKEARFALLAAVLAGFGRAISEVGAVMMVGG 151

                        170       180
                 ....*....|....*....|...
gi 490523167 220 NIAWKTEV--TSLMIFVRLQEFD 240
Cdd:NF038017 152 NIRGYTRVltTAIVLETSKGNFD 174
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 76-273 4.83e-13

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 65.78  E-value: 4.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   76 FGLLMAwilTRYRFPGRTLLDALMDLPFALPTAVAGLTLaslfsvngfygeWLAKFDIKVTYTWLGIAVAMAFTSIPFVV 155
Cdd:pfam00528   4 LGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILL------------VVIAILSILGHGILPAIILALLGWAGYAR 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  156 RTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIAwktevTSLMIFVR 235
Cdd:pfam00528  69 LIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG-----LGLLLIEA 143

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 490523167  236 LQEFDYPAASAIASVILAASLLLLFAINTLQSRFGRRV 273
Cdd:pfam00528 144 ILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
 
Name Accession Description Interval E-value
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
1-276 3.60e-164

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 456.14  E-value: 3.60e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   1 MFAVSKRVLPGFTLSLGTSLLFVCLVLLLPLSALVMQLSQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLM 80
Cdd:PRK10971   2 LAVSSKRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLM 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  81 AWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQP 160
Cdd:PRK10971  82 AWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQP 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 161 VLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFD 240
Cdd:PRK10971 162 VLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFD 241

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 490523167 241 YPAASAIASVILAASLLLLFAINTLQSRFGRRVVGH 276
Cdd:PRK10971 242 YPAASAIASVILAASLLLLFSINTLQSRFGRRVVGH 277
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 5-271 1.68e-112

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 324.78  E-value: 1.68e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   5 SKRVLPGFTLSLGTSLLFVCLVLLLPLSALVMQLSQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWIL 84
Cdd:COG0555    2 SRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  85 TRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEE 164
Cdd:COG0555   82 VRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEE 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 165 LGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAA 244
Cdd:COG0555  162 LDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGA 241

                        250       260
                 ....*....|....*....|....*..
gi 490523167 245 SAIASVILAASLLLLFAINTLQSRFGR 271
Cdd:COG0555  242 TAIALVLLLISFLLLLLINLLQRRSRR 268
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 8-272 3.82e-108

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 313.88  E-value: 3.82e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167    8 VLPGFTLSLGTSLLFVCLVLLLPLSALVMQLSQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRY 87
Cdd:TIGR02139   1 VLPGFGLSLGVTLTYLSLIVLLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   88 RFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGP 167
Cdd:TIGR02139  81 RFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  168 EYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAI 247
Cdd:TIGR02139 161 ELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFQKLEQYDYAGATAI 240

                         250       260
                  ....*....|....*....|....*
gi 490523167  248 ASVILAASLLLLFAINTLQSRFGRR 272
Cdd:TIGR02139 241 ASVMLIISFVILLFINLLQWWALRY 265
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 1-268 2.01e-107

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 312.36  E-value: 2.01e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167    1 MFAVSK---RVLPGFTLSLGTSLLFVCLVLLLPLSALVMQLSQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFG 77
Cdd:TIGR00969   1 MTALPSarfRFIKWGKLSLGIALLYVFLILILPVAALFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   78 LLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRT 157
Cdd:TIGR00969  81 LLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVRE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  158 VQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQ 237
Cdd:TIGR00969 161 VQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLTLPLLIEERLE 240

                         250       260       270
                  ....*....|....*....|....*....|.
gi 490523167  238 EFDYPAASAIASVILAASLLLLFAINTLQSR 268
Cdd:TIGR00969 241 QYDYPGAYVIAAVLLLVSLVTLFLINALQAR 271
cysT CHL00187
sulfate transport protein; Provisional
 39-239 1.88e-79

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 239.92  E-value: 1.88e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  39 SQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLF 118
Cdd:CHL00187  37 SQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVY 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 119 SVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMA 198
Cdd:CHL00187 117 GDNGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLT 196

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 490523167 199 GVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEF 239
Cdd:CHL00187 197 GLALTFSRAIGEYGSIVIISSNIPFKDLVASVLIFQSLEQY 237
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 53-272 3.07e-56

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 180.24  E-value: 3.07e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  53 PQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAK-F 131
Cdd:COG4149    3 PEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEElF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 132 DIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEF 211
Cdd:COG4149   83 GISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEF 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490523167 212 GAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFAINTLQSRFGRR 272
Cdd:COG4149  163 GATLMFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 44-271 3.21e-53

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 173.73  E-value: 3.21e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   44 AQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGF 123
Cdd:TIGR02140  34 GVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYGSQGW 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  124 YGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALS 203
Cdd:TIGR02140 114 LGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEAALTLGASWWQTFWRVTLPNIKWGLLYGVILC 193

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490523167  204 FTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFAINTLQSRFGR 271
Cdd:TIGR02140 194 NARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSYAAFAAASLLALLALVTLVLKAILERRQGR 261
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 38-248 6.08e-46

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 153.71  E-value: 6.08e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   38 LSQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASL 117
Cdd:TIGR01581   2 IRRLGGSHILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  118 FSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALM 197
Cdd:TIGR01581  82 FGRNGLLGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLL 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 490523167  198 AGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIA 248
Cdd:TIGR01581 162 AGLVLAWARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVASA 212
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 61-268 9.93e-45

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 150.09  E-value: 9.93e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   61 VTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWL 140
Cdd:TIGR02141   2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGISLVFTFT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  141 GIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGN 220
Cdd:TIGR02141  82 GAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGN 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 490523167  221 IAWKTEVTSLMIFVRLqEFDYPAASAIASVILAASLLLLFAINTLQSR 268
Cdd:TIGR02141 162 IPGETQTIPLAIYDAV-ESDYELAHQLSLVLLAISLIVLLLVELLNKR 208
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
47-246 5.14e-41

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 142.97  E-value: 5.14e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  47 WDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGE 126
Cdd:PRK11602  54 LQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGG 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 127 WLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTR 206
Cdd:PRK11602 134 WLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNAR 213

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 490523167 207 SLGEFGAVIFIAGNIawKTEVTSLMIFVRLQEFDYPAASA 246
Cdd:PRK11602 214 AIGEFGAVSVVSGSI--RGETLSLPLQIELLEQDYNTVGS 251
modB PRK09421
molybdate ABC transporter permease subunit;
53-237 3.84e-40

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 138.90  E-value: 3.84e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  53 PQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAK-F 131
Cdd:PRK09421   5 DPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEwF 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 132 DIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEF 211
Cdd:PRK09421  85 GISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164

                        170       180
                 ....*....|....*....|....*.
gi 490523167 212 GAVIFIAGNIAWKTEVTSLMIFVRLQ 237
Cdd:PRK09421 165 GATITFVSNIPGETQTIPSAMYTLIQ 190
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
43-251 1.20e-38

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 141.84  E-value: 1.20e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  43 WAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNG 122
Cdd:COG1178   40 LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNG 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 123 FYGEWLAK------FDIkvtYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPAL 196
Cdd:COG1178  120 LLNTLLRAlfglepPDI---YGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAI 196

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 490523167 197 MAGVALSFTRSLGEFGAVIFIAGNIawktEVTSLMIFVRLQ-EFDYPAASAIASVI 251
Cdd:COG1178  197 AAGALLVFLLCLADFGTPLVLGGGY----TTLTTAIYQAWLgDFDLGAAAALALVL 248
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 42-272 1.55e-38

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 135.62  E-value: 1.55e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  42 TWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN 121
Cdd:COG1177   46 TLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSAL 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 122 GFYGewlakfdikvtyTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVA 201
Cdd:COG1177  126 GLSG------------GLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGAL 193

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490523167 202 LSFTRSLGEFGAVIFIAGNiawKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFAINTLQSRFGRR 272
Cdd:COG1177  194 LAFTLSFDEFVITLFLAGP---GVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRRRGERR 261
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
39-251 2.24e-32

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 124.50  E-value: 2.24e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  39 SQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLasLF 118
Cdd:COG1178  320 DNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGL--LL 397

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 119 SVNGFYGEWLakfdikvTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMA 198
Cdd:COG1178  398 LFNRPLPLLL-------YGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLA 470

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 490523167 199 GVALSFTRSLGEFGAVIFIAGNiawKTEVTSLMIFVRLQEFDYPAASAIASVI 251
Cdd:COG1178  471 AALLVFVTSMKELSATLLLRPP---GFETLAVLIYQLASSGRYGEAAALALLL 520
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 42-250 2.24e-27

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 107.16  E-value: 2.24e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  42 TWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN 121
Cdd:COG1176   52 TLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRN 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 122 GFYGEWLAKF-----DIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPAL 196
Cdd:COG1176  132 GLLNSLLLALglidePLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGI 211

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 490523167 197 MAGVALSFTRSLGEFGAVIFIAGNiawKTEVTSLMIFVR-LQEFDYPAASAIASV 250
Cdd:COG1176  212 IAGSLLVFIPALGAFVTPALLGGG---KVLMIGNLIYQQfLSALNWPLAAALAVV 263
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 61-251 3.98e-26

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 101.20  E-value: 3.98e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  61 VTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFygewlakFDIKVTYTWL 140
Cdd:cd06261    3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG-------WGILPGLGLP 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 141 GIAVAMAFTsIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGN 220
Cdd:cd06261   76 ALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                        170       180       190
                 ....*....|....*....|....*....|.
gi 490523167 221 IAWKTEVTSLMIFVRLQEFDYPAASAIASVI 251
Cdd:cd06261  155 EAPGPGTGLLLIFAILFPGDLGVAAAVALIL 185
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
43-251 1.48e-18

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 83.26  E-value: 1.48e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  43 WAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRyRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN- 121
Cdd:COG1175   62 LDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDy 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 122 GFYGEWLAKFDIK-------VTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSP 194
Cdd:COG1175  141 GLLNALLGALGLEpinwlgdPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRP 220

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 490523167 195 ALMAGVALSFTRSLGEFGAV-IFIAGNIAWKTEVTSLMIFVR-LQEFDYPAASAIASVI 251
Cdd:COG1175  221 TILFVLVLSTIGALQVFDLVyVLTGGGPGNSTTTLVLYIYQTaFQQFDFGYASAIAVVL 279
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 41-250 2.06e-17

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 80.05  E-value: 2.06e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  41 MTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLF-S 119
Cdd:PRK15050  57 LGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYgS 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 120 VNGFYGEWLAKFDIKVT-----YTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSP 194
Cdd:PRK15050 137 AGSVNIALQRLFGLEAPpldflYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWP 216

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490523167 195 ALMAGVALSFTRSLGEFGAVIFIAGniawKTEVT-SLMIFVR-LQEFDYPAASAIASV 250
Cdd:PRK15050 217 ALAAGGSLCLLLTLNEFGIVLFTGA----KDVVTlPVLIYSKaIVDFDYPTACAIAVV 270
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 60-240 4.33e-16

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 74.12  E-value: 4.33e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  60 KVTLLSAAVASLFNGAFGLLMAWiltrYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWlakfdiKVTYTW 139
Cdd:NF038017   3 RVSGTATLIAALIGIPLGALLAL----RRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL------GLLYTP 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 140 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRkVVLPELSPALMAGVALSFTRSLGEFGAVIFIAG 219
Cdd:NF038017  73 TAMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW-TLLKEARFALLAAVLAGFGRAISEVGAVMMVGG 151

                        170       180
                 ....*....|....*....|...
gi 490523167 220 NIAWKTEV--TSLMIFVRLQEFD 240
Cdd:NF038017 152 NIRGYTRVltTAIVLETSKGNFD 174
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 40-209 2.79e-15

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 74.07  E-value: 2.79e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  40 QMTWAQYWDvISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRyrFPGRTLLDALMdlPFALPTA-VAGLTLA--- 115
Cdd:COG4132   47 GFTLANYAE-LTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRR--GGPGWLRRAVL--AFSGVASnFAGVPLAfaf 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 116 -SLFSVNGFYGEWLAKFDIKVT-----YTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVL 189
Cdd:COG4132  122 iATLGRNGLVTLLLKQLGIDLYdgfnlYSFWGLILVYLYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVAL 201

                        170       180
                 ....*....|....*....|
gi 490523167 190 PELSPALMAGVALSFTRSLG 209
Cdd:COG4132  202 PVLAPSLLGTFLLLFANAFG 221
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 42-208 1.15e-14

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 71.94  E-value: 1.15e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  42 TWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN 121
Cdd:PRK09500  42 TTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 122 ----GFYGEWLAKfdikVTYtwlgiavamaftSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALM 197
Cdd:PRK09500 122 giqlGFWSLLFAH----ITF------------CLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVA 185

                        170
                 ....*....|.
gi 490523167 198 AGVALSFTRSL 208
Cdd:PRK09500 186 AGWLLSFTLSL 196
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 39-250 9.01e-14

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 69.74  E-value: 9.01e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  39 SQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLF 118
Cdd:COG0395   56 SEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLF 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 119 SVNGFYGewlakfdikvtyTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMA 198
Cdd:COG0395  136 RQLGLLN------------TYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALAT 203

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 490523167 199 GVALSFTRSLGEF-GAVIFIAGNiAWKTEVTSLMIFVRLQEFDYP---AASAIASV 250
Cdd:COG0395  204 VAIFTFIGAWNDFlWPLILLTSP-DLRTLPVGLASFQGQYGTDWGllmAAAVIATL 258
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 76-273 4.83e-13

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 65.78  E-value: 4.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   76 FGLLMAwilTRYRFPGRTLLDALMDLPFALPTAVAGLTLaslfsvngfygeWLAKFDIKVTYTWLGIAVAMAFTSIPFVV 155
Cdd:pfam00528   4 LGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILL------------VVIAILSILGHGILPAIILALLGWAGYAR 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  156 RTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIAwktevTSLMIFVR 235
Cdd:pfam00528  69 LIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG-----LGLLLIEA 143

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 490523167  236 LQEFDYPAASAIASVILAASLLLLFAINTLQSRFGRRV 273
Cdd:pfam00528 144 ILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRV 181
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 36-222 2.71e-12

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 65.37  E-value: 2.71e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   36 MQLSQMTWAQYWDVISNPQ-----VVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFP-GRTLLDALMDLPFALPTAV 109
Cdd:TIGR02138  37 NGILNFLTGTVWDPGSGPVqeqygALPLIVGTLITSLIALLIAVPVGIGIAIFLSEIAPKrVRSVLKPVVELLAGIPSVV 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  110 AGL----TLASLFS--VNGFYGEWLaKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQS 183
Cdd:TIGR02138 117 YGFwglfVLVPFLKphFQPFLGSNL-GLIPLFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWET 195

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 490523167  184 FRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIA 222
Cdd:TIGR02138 196 IRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNVF 234
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 62-222 3.76e-10

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 59.17  E-value: 3.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   62 TLLSAAVASLFNGAFGLLMAWILTRYRFPGRTL--LDALMDLPFALPTAVAGLTLASLFSVNGFYGewlakfdikvTYTW 139
Cdd:TIGR00974  59 TLLLTLLAIVIAVPLGIGAAIYLAEYANGSRFTkiIRFAVDILAGVPSIVVGLFGYGFFVLTYLGG----------GFSL 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  140 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAG 219
Cdd:TIGR00974 129 LAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAG 208


                  ...
gi 490523167  220 NIA 222
Cdd:TIGR00974 209 GSA 211
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 49-220 4.22e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 59.69  E-value: 4.22e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   49 VISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWL 128
Cdd:TIGR03262  46 YFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLL 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  129 AKFDIkvtYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSL 208
Cdd:TIGR03262 126 GGFSI---YGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVI 202

                         170
                  ....*....|..
gi 490523167  209 GEFGAVIFIAGN 220
Cdd:TIGR03262 203 TDFGVPKVIGGD 214
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 62-204 4.40e-10

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 59.85  E-value: 4.40e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  62 TLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVT---YT 138
Cdd:PRK09433  49 SFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLLQALGLEWPfsiYG 128

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490523167 139 WLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSF 204
Cdd:PRK09433 129 LQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVAALIF 194
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 62-222 4.48e-10

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 58.95  E-value: 4.48e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  62 TLLSAAVASLFNGAFGLLMAWILTRY-RFPGRTLLDALMDLPFALPTAVAGL----TLASLFSvngFYGEWLAkfdikVT 136
Cdd:COG0573   82 TLLVSLIALLIAVPLGLGIAIFLSEYaPPRLRRILKPAIELLAGIPSVVYGFwglfVLVPLLR---DLFPWPP-----SG 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 137 YTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIF 216
Cdd:COG0573  154 FSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAVLM 233


                 ....*.
gi 490523167 217 IAGNIA 222
Cdd:COG0573  234 VAGNAP 239
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 62-220 7.68e-10

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 58.12  E-value: 7.68e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  62 TLLSAAVASLFNGAFGLLMAWILTRYRFPG------RTLLDALMdlpfALPTAVAGLTLASLFSVNgfygewlakfdIKV 135
Cdd:COG0581   46 TLLLVLLATLIAVPLGVLAAIYLAEYARGGrlarliRFAIDVLA----GVPSIVYGLFGYALFVLT-----------LGL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 136 TYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVI 215
Cdd:COG0581  111 GFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGETAPLL 190


                 ....*
gi 490523167 216 FIAGN 220
Cdd:COG0581  191 FTAGV 195
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 58-272 6.28e-09

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 56.23  E-value: 6.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   58 AYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPG--RTLLDALMDLPFALPTAVAGLTLASLFS-----VNGFYGewlak 130
Cdd:TIGR03262 333 AYKNSLRLAATTALIGTILVFGGAYLIEKTRGFGllRGVLRFLAILPMAVPGLVLGLGYIFFFNaptnpLNGLYG----- 407

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  131 fdikvTYTWLGIAVAMAFTSIPFVvrTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGE 210
Cdd:TIGR03262 408 -----TMALLVLCTVVHFYTVSHL--TAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTT 480

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490523167  211 FGAVIFIAGNiawKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFAINTLQSRFGRR 272
Cdd:TIGR03262 481 VSAVVFLYSP---DTKLASVAILNMDDAGDIAPAAAMATLIVLTSAVAKLLFALASRRLLRR 539
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 46-251 9.94e-09

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 54.86  E-value: 9.94e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  46 YWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRY-RFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFY 124
Cdd:PRK10592  52 YGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFgRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHA 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 125 GEWLAKFDIkvtytwLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSF 204
Cdd:PRK10592 132 IGWPADRGM------LTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAF 205

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 490523167 205 TRSLGEFGAVIFIAGNIAwktEVTSLMIFVRLQEFDYPAASAIASVI 251
Cdd:PRK10592 206 TLSLDDLVIASFVSGPGA---TTLPMLVFSSVRMGVNPEINALATLI 249
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 39-211 3.36e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 53.23  E-value: 3.36e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  39 SQMTWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGR-TLLDALMDLPFaLPTAVAGLTLASL 117
Cdd:COG3833   55 ENFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRFRFKGRkAGLLALLLLQM-FPAFLALVALYLL 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 118 FSvngfygewlakfDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALM 197
Cdd:COG3833  134 LS------------ALGLLNTLLGLILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILA 201

                        170
                 ....*....|....
gi 490523167 198 AGVALSFTRSLGEF 211
Cdd:COG3833  202 VVALLSFIGPWNDF 215
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 66-221 5.04e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 52.77  E-value: 5.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  66 AAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFD-----IKVTYTWL 140
Cdd:PRK09497  72 ALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGvidtpIRIMFTES 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 141 GIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEF-------GA 213
Cdd:PRK09497 152 AVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFyvsdllgGA 231


                 ....*...
gi 490523167 214 VIFIAGNI 221
Cdd:PRK09497 232 KNLLIGNV 239
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 66-248 1.91e-07

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 51.84  E-value: 1.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   66 AAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVT---YTWLGI 142
Cdd:TIGR01253  56 AFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWLATLANLFGLEWQfhiYGLQGI 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  143 AVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAGNIA 222
Cdd:TIGR01253 136 LIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLGGGPQ 215

                         170       180
                  ....*....|....*....|....*.
gi 490523167  223 WKTEVTSLMIFVrLQEFDYPAASAIA 248
Cdd:TIGR01253 216 ATTIELAIYQAI-LFDFDLAKAALFA 240
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 144-204 4.14e-07

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 49.67  E-value: 4.14e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490523167 144 VAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSF 204
Cdd:COG2011   97 VPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTL 157
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 44-251 1.14e-06

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 48.94  E-value: 1.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  44 AQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGF 123
Cdd:PRK10683  84 GNFLQLTDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGV 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 124 YGE---WLAKFD--IKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMA 198
Cdd:PRK10683 164 LNNfllWLGVIDqpLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIA 243

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490523167 199 GVALSFTRSLGEFGAVIFIAGNiawktevTSLMI-FVRLQEF----DYPAASAIASVI 251
Cdd:PRK10683 244 GSMLVFIPAVGEFVIPELLGGP-------DSIMIgRVLWQEFfnnrDWPVASAVAIIM 294
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 42-208 1.76e-06

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 47.84  E-value: 1.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  42 TWAQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFpGRTLLDALMDLPFALPTavagLTLASLFSVn 121
Cdd:COG0600   46 VLAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL-LRRLLDPLLVFLRPIPP----LALAPLLIL- 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 122 gfygeWLAkfdikvtYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVA 201
Cdd:COG0600  120 -----WFG-------IGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLR 187


                 ....*..
gi 490523167 202 LSFTRSL 208
Cdd:COG0600  188 IALGLAW 194
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 54-219 4.08e-06

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 4.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  54 QVVAAYKVTLLSAAVASLFNGAFGLLMAwILTRYrFPGR--TLLDALMDLPFALPTAVAGLTLASLFSVNgfygewlakf 131
Cdd:COG1173   73 RLLYGARISLLVGLLAVLIALVIGVLLG-LLAGY-FGGWvdAVLMRLVDVLLAFPSLLLAIALVAVLGPG---------- 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 132 dikvtytWLGIAVAMAFTSIPFVVRTVQP-VLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTrslge 210
Cdd:COG1173  141 -------LLNVILALGLTGWPGYARLVRAqVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIA----- 208


                 ....*....
gi 490523167 211 fGAVIFIAG 219
Cdd:COG1173  209 -SAILAEAG 216
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 44-214 4.24e-06

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 47.52  E-value: 4.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  44 AQYWDVISNPQVVAAYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASlfsvnGF 123
Cdd:PRK09433 306 ASLLRVLAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKLAAQALELSGMLILAMPGIVLAT-----GL 380

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 124 YgewLAKFDIKVTYTWLGIAVAM--AFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVA 201
Cdd:PRK09433 381 F---LLLRNTTDLPASALGIVILtnALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFA 457

                        170
                 ....*....|...
gi 490523167 202 LSFTRSLGEFGAV 214
Cdd:PRK09433 458 FACALSLGDFGVI 470
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
127-197 3.46e-04

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 40.87  E-value: 3.46e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490523167 127 WLAKFDIKVTYTWLGIAVAMAFTSI---PFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALM 197
Cdd:PRK10782  74 WMIPFTRVIVGTSIGLQAAIVPLTVgaaPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLV 147
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 37-219 5.00e-04

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 41.39  E-value: 5.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  37 QLSQMTWAQYWDVISNPqvvaaYKVTLLSAAVASLFNGAFGLLMAWILTRYRFPGRTLLDALMDLPFALPTavagltLAS 116
Cdd:COG4135  341 SWTLRFWQRAAPGLLEP-----LGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQ------IAF 409

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 117 LFsvnGFYGEWLAkfdIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPAL 196
Cdd:COG4135  410 LF---GLQVLLLR---LGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPI 483

                        170       180
                 ....*....|....*....|...
gi 490523167 197 MAGVALSFTRSLGEFGAVIFIAG 219
Cdd:COG4135  484 LTAAAVGFAVSVAQYLPTLLIGA 506
pstC PRK11275
phosphate ABC transporter permease PstC;
140-220 1.15e-03

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 39.68  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 140 LGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSFTRSLGEFGAVIFIAG 219
Cdd:PRK11275 171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIG 250


                 .
gi 490523167 220 N 220
Cdd:PRK11275 251 N 251
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 63-251 3.10e-03

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 38.29  E-value: 3.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167   63 LLSAAVASLFNGAFGLLMAWILTRY---RFPGRTLLDALMdlpfALPTAVAGLTLASLFSVNGFYGewlakfdikvtytw 139
Cdd:TIGR01097  68 ILGTVLAAVLAVPLALLAARNITPSpwlYGLARLLLNFLR----AIPELVWALIFVAAVGLGPFAG-------------- 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167  140 lgiAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSF---TRSLGEFGAVif 216
Cdd:TIGR01097 130 ---VLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFeinVRAAAVLGLV-- 204

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 490523167  217 IAGNIAwktevtsLMIFVRLQEFDYPAASAIASVI 251
Cdd:TIGR01097 205 GAGGIG-------LELDTAIGLFDYDEVSAIILVI 232
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 143-247 5.41e-03

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 37.37  E-value: 5.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490523167 143 AVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRLQSFRKVVLPELSPALMAGVALSF---TRS---LGEFGavif 216
Cdd:COG3639  123 VLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLSYTLYRFeinIRAatvLGLVG---- 198

                         90       100       110
                 ....*....|....*....|....*....|.
gi 490523167 217 iAGNIAwktevtsLMIFVRLQEFDYPAASAI 247
Cdd:COG3639  199 -AGGIG-------LLLNEAIRLFQYDEVAAI 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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