NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|490575369|ref|WP_004440389|]
View 

MULTISPECIES: CsbD family protein [Rhizobium/Agrobacterium group]

Protein Classification

CsbD family protein( domain architecture ID 10007103)

CsbD family protein similar to Lactococcus lactis UPF0337 protein YhjA

CATH:  1.10.1470.10
SCOP:  4002850

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
3-62 3.76e-12

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


:

Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 54.80  E-value: 3.76e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490575369  3 STSDKVAGKANEVAGKVKKNVGEATGNNELRAKGAAQETKGKVQSSVGKAKDAVKGAVDR 62
Cdd:COG3237   1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDD 60
 
Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
3-62 3.76e-12

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 54.80  E-value: 3.76e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490575369  3 STSDKVAGKANEVAGKVKKNVGEATGNNELRAKGAAQETKGKVQSSVGKAKDAVKGAVDR 62
Cdd:COG3237   1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDD 60
CsbD pfam05532
CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by ...
 6-58 7.79e-09

CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.


Pssm-ID: 428512  Cd Length: 53  Bit Score: 45.96  E-value: 7.79e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 490575369   6 DKVAGKANEVAGKVKKNVGEATGNNELRAKGAAQETKGKVQSSVGKAKDAVKG 58
Cdd:pfam05532  1 DKIEGKAEQVKGKVKEAWGKATGDEKLEAEGKADQLKGKAQQKYGDAKDAAKD 53
 
Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
3-62 3.76e-12

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 54.80  E-value: 3.76e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490575369  3 STSDKVAGKANEVAGKVKKNVGEATGNNELRAKGAAQETKGKVQSSVGKAKDAVKGAVDR 62
Cdd:COG3237   1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDD 60
CsbD pfam05532
CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by ...
 6-58 7.79e-09

CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.


Pssm-ID: 428512  Cd Length: 53  Bit Score: 45.96  E-value: 7.79e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 490575369   6 DKVAGKANEVAGKVKKNVGEATGNNELRAKGAAQETKGKVQSSVGKAKDAVKG 58
Cdd:pfam05532  1 DKIEGKAEQVKGKVKEAWGKATGDEKLEAEGKADQLKGKAQQKYGDAKDAAKD 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH