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Conserved domains on  [gi|490822549|ref|WP_004684639|]
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MULTISPECIES: YkvA family protein [Brucella]

Protein Classification

YkvA family protein( domain architecture ID 10007237)

YkvA family protein is a DUF1232 domain-containing protein, similar to Bacillus subtilis membrane protein YkvA

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YkvA COG3339
Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];
26-125 4.86e-29

Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];


:

Pssm-ID: 442568  Cd Length: 104  Bit Score: 101.19  E-value: 4.86e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490822549  26 KQGFWKA-VRRAGRMVPFMDEVVAAYYCALDQKTPMRVRMTLMAALAYFVLPFDAIPDILAGIGFTDDVAVLMAALTAVR 104
Cdd:COG3339    3 KSDFWDGkLKKLARRLPFLRRLLLLYYAGRDPRVPWKAKLLIAAALAYFVSPIDLIPDFIPVLGYLDDLAVLALALALVI 82

                         90       100
                 ....*....|....*....|.
gi 490822549 105 AHITPAHRLAARQALEDEAAV 125
Cdd:COG3339   83 KEIPPEVREEAWEGAEDLFEA 103
 
Name Accession Description Interval E-value
YkvA COG3339
Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];
26-125 4.86e-29

Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];


Pssm-ID: 442568  Cd Length: 104  Bit Score: 101.19  E-value: 4.86e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490822549  26 KQGFWKA-VRRAGRMVPFMDEVVAAYYCALDQKTPMRVRMTLMAALAYFVLPFDAIPDILAGIGFTDDVAVLMAALTAVR 104
Cdd:COG3339    3 KSDFWDGkLKKLARRLPFLRRLLLLYYAGRDPRVPWKAKLLIAAALAYFVSPIDLIPDFIPVLGYLDDLAVLALALALVI 82

                         90       100
                 ....*....|....*....|.
gi 490822549 105 AHITPAHRLAARQALEDEAAV 125
Cdd:COG3339   83 KEIPPEVREEAWEGAEDLFEA 103
DUF1232 pfam06803
Protein of unknown function (DUF1232); This family represents a conserved region of ...
 63-98 1.07e-11

Protein of unknown function (DUF1232); This family represents a conserved region of approximately 60 residues within a number of hypothetical bacterial and archaeal proteins of unknown function.


Pssm-ID: 462011  Cd Length: 36  Bit Score: 55.03  E-value: 1.07e-11
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 490822549   63 RMTLMAALAYFVLPFDAIPDILAGIGFTDDVAVLMA 98
Cdd:pfam06803   1 KLLILGALAYLISPIDLIPDFIPVLGYLDDLAVLAL 36
 
Name Accession Description Interval E-value
YkvA COG3339
Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];
26-125 4.86e-29

Uncharacterized membrane protein YkvA, DUF1232 family [Function unknown];


Pssm-ID: 442568  Cd Length: 104  Bit Score: 101.19  E-value: 4.86e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490822549  26 KQGFWKA-VRRAGRMVPFMDEVVAAYYCALDQKTPMRVRMTLMAALAYFVLPFDAIPDILAGIGFTDDVAVLMAALTAVR 104
Cdd:COG3339    3 KSDFWDGkLKKLARRLPFLRRLLLLYYAGRDPRVPWKAKLLIAAALAYFVSPIDLIPDFIPVLGYLDDLAVLALALALVI 82

                         90       100
                 ....*....|....*....|.
gi 490822549 105 AHITPAHRLAARQALEDEAAV 125
Cdd:COG3339   83 KEIPPEVREEAWEGAEDLFEA 103
DUF1232 pfam06803
Protein of unknown function (DUF1232); This family represents a conserved region of ...
 63-98 1.07e-11

Protein of unknown function (DUF1232); This family represents a conserved region of approximately 60 residues within a number of hypothetical bacterial and archaeal proteins of unknown function.


Pssm-ID: 462011  Cd Length: 36  Bit Score: 55.03  E-value: 1.07e-11
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 490822549   63 RMTLMAALAYFVLPFDAIPDILAGIGFTDDVAVLMA 98
Cdd:pfam06803   1 KLLILGALAYLISPIDLIPDFIPVLGYLDDLAVLAL 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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