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Conserved domains on  [gi|490844049|ref|WP_004706119|]
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MULTISPECIES: aliphatic sulfonate ABC transporter permease SsuC [Acinetobacter]

Protein Classification

ABC transporter permease( domain architecture ID 30)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM_PBP2 super family cl00427
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 8-264 6.07e-106

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


The actual alignment was detected with superfamily member PRK11365:

Pssm-ID: 444901  Cd Length: 263  Bit Score: 307.63  E-value: 6.07e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049   8 VSRGTKQIGQRLLPWIFPIVLLVVWQIASSSGLLESRILPAPSAVISAFWHLLVSGELWHHVKVSAGRALLGLLVGGGLG 87
Cdd:PRK11365   1 MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  88 LLLGLLNGSSRFASTLLDTTLQMIRNIPALALIPLVILWFGIDETAKLFLVAVGVFFPIYINTYHGIRSVDPQLIEMGKS 167
Cdd:PRK11365  81 LILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 168 YGLSRWQLYKEIILPGAMPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADV 247
Cdd:PRK11365 161 YGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV 240

                        250
                 ....*....|....*..
gi 490844049 248 LAQILERYLLRWHAGYQ 264
Cdd:PRK11365 241 SAQLLERLWLRWNPAYH 257
 
Name Accession Description Interval E-value
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
8-264 6.07e-106

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 307.63  E-value: 6.07e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049   8 VSRGTKQIGQRLLPWIFPIVLLVVWQIASSSGLLESRILPAPSAVISAFWHLLVSGELWHHVKVSAGRALLGLLVGGGLG 87
Cdd:PRK11365   1 MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  88 LLLGLLNGSSRFASTLLDTTLQMIRNIPALALIPLVILWFGIDETAKLFLVAVGVFFPIYINTYHGIRSVDPQLIEMGKS 167
Cdd:PRK11365  81 LILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 168 YGLSRWQLYKEIILPGAMPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADV 247
Cdd:PRK11365 161 YGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV 240

                        250
                 ....*....|....*..
gi 490844049 248 LAQILERYLLRWHAGYQ 264
Cdd:PRK11365 241 SAQLLERLWLRWNPAYH 257
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 12-260 1.43e-80

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 242.75  E-value: 1.43e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  12 TKQIGQRLLPWIFPIVLLVVWQIASSSGLLESRILPAPSAVISAFWHLLVSGELWHHVKVSAGRALLGLLVGGGLGLLLG 91
Cdd:COG0600    6 RRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLG 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  92 LLNGSSRFASTLLDTTLQMIRNIPALALIPLVILWFGIDETAKLFLVAVGVFFPIYINTYHGIRSVDPQLIEMGKSYGLS 171
Cdd:COG0600   86 LLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGAS 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 172 RWQLYKEIILPGAMPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQI 251
Cdd:COG0600  166 RWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRL 245


                 ....*....
gi 490844049 252 LERYLLRWH 260
Cdd:COG0600  246 LERRLLRWR 254
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 94-254 9.36e-19

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 81.19  E-value: 9.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049   94 NGSSRFASTLLDTTLQMIRNIPALALIPLVIL-----WFGIDETAKLFLVAVGVFFPIYINTYHGIRSVDPQLIEMGKSY 168
Cdd:pfam00528  10 LRRGRRLDRLLRPLIDLLQALPSFVLAILLVViailsILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARAL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  169 GLSRWQLYKEIILPGAMPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDV----VLVGILLYALLGKL 244
Cdd:pfam00528  90 GASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEiqgpVLAAALILLLLNLL 169

                         170
                  ....*....|
gi 490844049  245 ADVLAQILER 254
Cdd:pfam00528 170 VDILQRLLDP 179
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 98-244 3.73e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 57.67  E-value: 3.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  98 RFASTLLDTTLQMIRNIPALALIPLVILWFGIDETAKLF---------LVAVGVFFPIYINTYHGIRSVDPQLIEMGKSY 168
Cdd:cd06261   31 GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglglpaliLALLLIAPFARLIRRAALESIPKDLVEAARAL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 169 GLSRWQLYKEIILPGAMPSILVGLRFALGLVW----VLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKL 244
Cdd:cd06261  111 GASPWQIFRRIILPLALPPILTGLVLAFARALgefaLVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
8-264 6.07e-106

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 307.63  E-value: 6.07e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049   8 VSRGTKQIGQRLLPWIFPIVLLVVWQIASSSGLLESRILPAPSAVISAFWHLLVSGELWHHVKVSAGRALLGLLVGGGLG 87
Cdd:PRK11365   1 MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  88 LLLGLLNGSSRFASTLLDTTLQMIRNIPALALIPLVILWFGIDETAKLFLVAVGVFFPIYINTYHGIRSVDPQLIEMGKS 167
Cdd:PRK11365  81 LILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 168 YGLSRWQLYKEIILPGAMPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADV 247
Cdd:PRK11365 161 YGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV 240

                        250
                 ....*....|....*..
gi 490844049 248 LAQILERYLLRWHAGYQ 264
Cdd:PRK11365 241 SAQLLERLWLRWNPAYH 257
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 12-260 1.43e-80

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 242.75  E-value: 1.43e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  12 TKQIGQRLLPWIFPIVLLVVWQIASSSGLLESRILPAPSAVISAFWHLLVSGELWHHVKVSAGRALLGLLVGGGLGLLLG 91
Cdd:COG0600    6 RRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLG 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  92 LLNGSSRFASTLLDTTLQMIRNIPALALIPLVILWFGIDETAKLFLVAVGVFFPIYINTYHGIRSVDPQLIEMGKSYGLS 171
Cdd:COG0600   86 LLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGAS 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 172 RWQLYKEIILPGAMPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQI 251
Cdd:COG0600  166 RWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRL 245


                 ....*....
gi 490844049 252 LERYLLRWH 260
Cdd:COG0600  246 LERRLLRWR 254
PRK10160 PRK10160
taurine ABC transporter permease TauC;
27-264 3.43e-41

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 142.62  E-value: 3.43e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  27 VLLVVWQIASSSGLLESRILPAPSAVISAFWHL-----LVSGELWHHVKVSAGRALLGLLVGGGLGLLLGLLNGSSRFAS 101
Cdd:PRK10160  33 VLLAVWWAVAALQLISPLFLPPPQQVLAKLLTIagpqgFMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVR 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 102 TLLDTTLQMIRNIPALALIPLVILWFGIDETAKLFLVAVGVFFPIYINTYHGIRSVDPQLIEMGKSYGLSRWQLYKEIIL 181
Cdd:PRK10160 113 GILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVIL 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 182 PGAMPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQILERYLLRWHA 261
Cdd:PRK10160 193 PGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPWHG 272


                 ...
gi 490844049 262 GYQ 264
Cdd:PRK10160 273 EVQ 275
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 94-254 9.36e-19

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 81.19  E-value: 9.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049   94 NGSSRFASTLLDTTLQMIRNIPALALIPLVIL-----WFGIDETAKLFLVAVGVFFPIYINTYHGIRSVDPQLIEMGKSY 168
Cdd:pfam00528  10 LRRGRRLDRLLRPLIDLLQALPSFVLAILLVViailsILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARAL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  169 GLSRWQLYKEIILPGAMPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDV----VLVGILLYALLGKL 244
Cdd:pfam00528  90 GASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEiqgpVLAAALILLLLNLL 169

                         170
                  ....*....|
gi 490844049  245 ADVLAQILER 254
Cdd:pfam00528 170 VDILQRLLDP 179
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 97-259 3.08e-18

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 80.48  E-value: 3.08e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  97 SRFASTLLDTTLQMIRNIPALALIPLVILWFGIDETAKLFLVAVGVFFPIYINTYHGIRSVDPQLIEMGKSYGLSRWQLY 176
Cdd:COG1174   48 RRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRL 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 177 KEIILPGAMPSILVGLRFALGLVWVLLIVAETISAQaGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQILERYL 256
Cdd:COG1174  128 WRVELPLALPVILAGIRTAAVQNIGTATLAALIGAG-GLGDLIFDGLQLNNTALILAGAILVALLALLVDLLLALLERLL 206


                 ...
gi 490844049 257 LRW 259
Cdd:COG1174  207 TPR 209
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 98-244 3.73e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 57.67  E-value: 3.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049  98 RFASTLLDTTLQMIRNIPALALIPLVILWFGIDETAKLF---------LVAVGVFFPIYINTYHGIRSVDPQLIEMGKSY 168
Cdd:cd06261   31 GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglglpaliLALLLIAPFARLIRRAALESIPKDLVEAARAL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 169 GLSRWQLYKEIILPGAMPSILVGLRFALGLVW----VLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKL 244
Cdd:cd06261  111 GASPWQIFRRIILPLALPPILTGLVLAFARALgefaLVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
ProW COG4176
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 119-192 8.99e-09

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443335  Cd Length: 275  Bit Score: 54.72  E-value: 8.99e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490844049 119 LIPLVILwFGIDETAKLFLVAVGVFFPIYINTYHGIRSVDPQLIEMGKSYGLSRWQLYKEIILPGAMPSILVGL 192
Cdd:COG4176  143 LIPAVML-FGIGKVPGVIATVIFALPPAIRLTNLGIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTIMAGV 215
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
119-254 2.69e-06

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 47.78  E-value: 2.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 119 LIPLVILwFGIDETAKlflVAVGVFF---PIYINTYHGIRSVDPQLIEMGKSYGLSRWQLYKEIILPGAMPSILVGLRFA 195
Cdd:PRK10952 197 LVPIVML-FGIGNVPG---VVVTIIFalpPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQT 272

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 490844049 196 LGLVWVLLIVAETIsAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQILER 254
Cdd:PRK10952 273 LMLALSMVVIASMI-AVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGR 330
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 161-210 4.30e-05

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 44.45  E-value: 4.30e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 490844049 161 LIEMGKSYGLSRWQLYKEIILPGAMPSILVGLRFALGLVWVLLIVAETIS 210
Cdd:COG4986  467 LREAARNFGLRGWLWWRRLILPGIFPYYVTGAITASGGAWNASIVAEYVS 516
PRK15069 PRK15069
histidine ABC transporter permease HisM;
154-185 9.40e-04

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 39.65  E-value: 9.40e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 490844049 154 IRSVDPQLIEMGKSYGLSRWQLYKEIILPGAM 185
Cdd:PRK15069 125 IRSVPHGEIEAARAYGMSTFKLYRRIILPSAL 156
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 153-260 3.24e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 37.75  E-value: 3.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 153 GIRSVDPQLIEMGKSYGLSRWQLYKEIILPGAMPSILVglrfALGLVWVLLIVAETISAQAGIGYMT-----MNAREFLQ 227
Cdd:COG0765  110 GIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILP----PLGNEFISLLKDTSLVSVIGVPELTraaqqIASRTFRP 185

                         90       100       110
                 ....*....|....*....|....*....|...
gi 490844049 228 TDVVLVGILLYALLGKLADVLAQILERYLLRWH 260
Cdd:COG0765  186 FEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 142-198 5.26e-03

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 37.42  E-value: 5.26e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490844049 142 VFFPIYINT-YHGIRSVDPQLIEMGKSYGLSRWQLYKEIILPGAMPSILVG--LRFALGL 198
Cdd:COG0555  146 VSLPFVVRTvQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGfaLAFARAL 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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