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Conserved domains on  [gi|490870576|ref|WP_004732591|]
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MULTISPECIES: ABC transporter permease [Vibrio]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 7-261 3.36e-56

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 180.69  E-value: 3.36e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   7 RFHKTVVYSIVGIMMIPILATFIYSISSRWGATILPDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLPAIF 86
Cdd:COG1177    7 LLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  87 VVFYYFPKLDKVMNILILLPFAVPPVVSSVGLLQLYadSEISLIGTPWILIGTYFTIALPFMYRAIANSFEAINlHDLMD 166
Cdd:COG1177   87 ALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLF--SALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD-PSLEE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 167 AAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTRYETLQIYLYNM-RQTSGHFTSALVMTYFLF 245
Cdd:COG1177  164 AARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMiRRGISPEINALSTLLILL 243

                        250
                 ....*....|....*.
gi 490870576 246 IFLLTWLASRFSQGTK 261
Cdd:COG1177  244 SLLLLLLAERLRRRGE 259
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 7-261 3.36e-56

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 180.69  E-value: 3.36e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   7 RFHKTVVYSIVGIMMIPILATFIYSISSRWGATILPDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLPAIF 86
Cdd:COG1177    7 LLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  87 VVFYYFPKLDKVMNILILLPFAVPPVVSSVGLLQLYadSEISLIGTPWILIGTYFTIALPFMYRAIANSFEAINlHDLMD 166
Cdd:COG1177   87 ALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLF--SALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD-PSLEE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 167 AAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTRYETLQIYLYNM-RQTSGHFTSALVMTYFLF 245
Cdd:COG1177  164 AARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMiRRGISPEINALSTLLILL 243

                        250
                 ....*....|....*.
gi 490870576 246 IFLLTWLASRFSQGTK 261
Cdd:COG1177  244 SLLLLLLAERLRRRGE 259
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 63-251 2.69e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.06  E-value: 2.69e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  63 FGRSLFICVAALSLSVVLVLPAIFVVFYYFPKLDKVMNILILLPFAVPPVVSSVGLLQLYADSEISLIGTPWILIG--TY 140
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPAliLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 141 FTIALPFMYRAIANSFEAINlHDLMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTRYETL 220
Cdd:cd06261   81 LLLIAPFARLIRRAALESIP-KDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                        170       180       190
                 ....*....|....*....|....*....|.
gi 490870576 221 QIYLYNMRQTSGHFTSALVMTYFLFIFLLTW 251
Cdd:cd06261  160 GTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 19-256 3.35e-09

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 55.86  E-value: 3.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   19 IMMIPILATFIYSISSRWGAtilpdgftldwYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLPAIFVVFYYFPKLDKV 98
Cdd:TIGR02140  16 LLLLPLALIFQEAFEKGFGV-----------FFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   99 MNILILLPFAVPPVVSSVGLLQLY----------ADSEISLI-GTPWILIGTYFtIALPFMYRAIANSFEAINLHDlMDA 167
Cdd:TIGR02140  85 LLTIIDLPFSVSPVVAGLIFVLLYgsqgwlgpwlEDLDIKIIfSLPGIVLATMF-VTCPFVARELIPVMEEQGTEQ-EEA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  168 AHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEF-----VFANILVGTRYETLQI-YLYNMRQTSGHFTSALVMT 241
Cdd:TIGR02140 163 ALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFgavsvVSGHIRGKTNTLPLHVeLLYNEYQSYAAFAAASLLA 242

                         250
                  ....*....|....*
gi 490870576  242 yflFIFLLTWLASRF 256
Cdd:TIGR02140 243 ---LLALVTLVLKAI 254
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 1-227 3.52e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 55.76  E-value: 3.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   1 MNTVNTRFHKTVVYSIvgiMMIPILATFIYSI-SSRWGATIlpDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVV 79
Cdd:PRK09500   1 MGRLLRGGFMTLVYAY---LYIPIIILIVNSFnSSRFGINW--KGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  80 L-VLPAIFVVFYYFPkLDKVMNILILLPFAVPPVVSSVGLLQLYADSEISLigTPWILIGTYFTIALPFMYRAIANSFEA 158
Cdd:PRK09500  76 IgSLTAVALYRYRFR-GKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQL--GFWSLLFAHITFCLPFVVVTVYSRLKG 152

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490870576 159 INLHdLMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTRYETLQIYLYNM 227
Cdd:PRK09500 153 FDVR-MLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSM 220
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 84-261 9.37e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 41.90  E-value: 9.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   84 AIFVVFYYFPKLDKVMNILILLPFAVPPVVssVGLLQLYADSEISLIGTPWILIGTYFTIALPFMYRAIANSFEAINlHD 163
Cdd:pfam00528   5 GIIAALRRGRRLDRLLRPLIDLLQALPSFV--LAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLP-SD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  164 LMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANIL---VGTRYETLQIYLYNMRQTSGHFTSALVM 240
Cdd:pfam00528  82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswPGLGLLLIEAILGYDYPEIQGPVLAAAL 161

                         170       180
                  ....*....|....*....|.
gi 490870576  241 TYFLFIFLLTWLASRFSQGTK 261
Cdd:pfam00528 162 ILLLLNLLVDILQRLLDPRVR 182
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 7-261 3.36e-56

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 180.69  E-value: 3.36e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   7 RFHKTVVYSIVGIMMIPILATFIYSISSRWGATILPDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLPAIF 86
Cdd:COG1177    7 LLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  87 VVFYYFPKLDKVMNILILLPFAVPPVVSSVGLLQLYadSEISLIGTPWILIGTYFTIALPFMYRAIANSFEAINlHDLMD 166
Cdd:COG1177   87 ALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLF--SALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD-PSLEE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 167 AAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTRYETLQIYLYNM-RQTSGHFTSALVMTYFLF 245
Cdd:COG1177  164 AARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMiRRGISPEINALSTLLILL 243

                        250
                 ....*....|....*.
gi 490870576 246 IFLLTWLASRFSQGTK 261
Cdd:COG1177  244 SLLLLLLAERLRRRGE 259
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
16-257 2.50e-25

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 104.09  E-value: 2.50e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  16 IVGIMMIPILATFIYSISsrwgaTILPDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLPAIFVVFYYFPKL 95
Cdd:COG1178  298 VLLGLLLPLLALLLWSLT-----KALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRL 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  96 DKVMNILILLPFAVPPVVSSVGLLQLYADSE-ISLIGTPWILIGTYFTIALPFMYRAIANSFEAINlHDLMDAAHLLGAS 174
Cdd:COG1178  373 ARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLpLLLYGTLAILVLAYVVRFLPFALRSLEAALAQID-PSLEEAARSLGAS 451

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 175 TTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTRYETLQIYLYNMrQTSGHFTSALVMT--YFLFIFLLTWL 252
Cdd:COG1178  452 PLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQL-ASSGRYGEAAALAllLVLVSLLPVLL 530


                 ....*
gi 490870576 253 ASRFS 257
Cdd:COG1178  531 LERLL 535
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 16-257 4.01e-24

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 97.91  E-value: 4.01e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  16 IVGIMMIPILATFIYSISSRWGATILPDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLPAIFVVFYYFPKL 95
Cdd:COG1176   22 LLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRW 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  96 DKVMNILILLPFAVPPVVSSVGLLQLYA---------------DSEISLIGTPWILIGTYFTIALPFMYRAIANSFEAIN 160
Cdd:COG1176  102 RNLLLLLVILPFWTSFLVRTYAWIVLLGrngllnslllalgliDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKID 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 161 lHDLMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTRYETLQIYLYNMRQTSG--HFTSAL 238
Cdd:COG1176  182 -PSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALnwPLAAAL 260

                        250
                 ....*....|....*....
gi 490870576 239 VMTYFLFIFLLTWLASRFS 257
Cdd:COG1176  261 AVVLLLIVLLVLLLYLRLL 279
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 16-193 3.16e-20

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 87.11  E-value: 3.16e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  16 IVGIMMIPILATFIYSISSRWGAtilpdgftldwYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLPAIFV-VFYYFPk 94
Cdd:COG0555   20 LSLIVLLPLAALVLKAAGLGWAE-----------FWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVlVRYRFP- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  95 LDKVMNILILLPFAVPPVVSSVGLLQLYADS----------EISLIGTPWILIGTYFTIALPFMYRAIANSFEAINlHDL 164
Cdd:COG0555   88 GKRLVDALVDLPFALPTAVAGIALLLLFGPNgwlgqllaplGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELD-PEL 166

                        170       180
                 ....*....|....*....|....*....
gi 490870576 165 MDAAHLLGASTTKAFLLIILPNLKKGLMA 193
Cdd:COG0555  167 EEAAATLGASRWQTFRRVILPLLLPALLT 195
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 16-232 9.80e-19

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 83.22  E-value: 9.80e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  16 IVGIMMIPILATFIYSISS-----RWGATILPDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLPAIFVVFY 90
Cdd:COG0395   24 LALLFLFPLYWMVVTSFKPpaeifSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALAR 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  91 YFPKLDKVMNILILLPFAVPPVVSSVGLLQLYadSEISLIGTPWILIGTYFTIALPF---MYRaiaNSFEAINlHDLMDA 167
Cdd:COG0395  104 FRFRGRKLLFLLILATLMIPGQVLLIPLYLLF--RQLGLLNTYWGLILPYLAFGLPFgifLLR---QFFRSIP-RELEEA 177

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490870576 168 AHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTR-YETLQIYLYNMRQTSG 232
Cdd:COG0395  178 ARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPdLRTLPVGLASFQGQYG 243
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 55-256 1.51e-15

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 73.16  E-value: 1.51e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  55 TDPRFLQAFGRSLFICVAALSLSVVLVLPAIFVVFYYFPKLDKVMNILILLPFAVPPVVSSVGLL-----------QLYA 123
Cdd:COG4149    1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLllfgrngplgqLLEE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 124 DSEISLIGTPW-ILIGTYFtIALPFMYRAIANSFEAINlHDLMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFL 202
Cdd:COG4149   81 LFGISLVFTWTgAVLASVV-VSLPLMVQPLRAAFEAVD-PRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARA 158

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490870576 203 LGEF----VFA-NILVGTRyeTLQIYLYNMRQtSGHFTSALVMT------YFLFIFLLTWLASRF 256
Cdd:COG4149  159 LGEFgatlMFAgNIPGKTQ--TLPLAIYDAVE-AGDYAAAHALSlillaiSFVVLLLLNLLNRRR 220
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
16-259 1.93e-13

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 69.42  E-value: 1.93e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  16 IVGIMMIPILATFIYSISSRWgatilpdgftlDWYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLP-AIFVVFYYFPk 94
Cdd:COG1178   20 LALLVLLPLLALLLRAFTDGL-----------ANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPlAWLLARTDFP- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  95 LDKVMNILILLPFAVPPVVSSVGLLQLYADSEI------SLIGTPWILIGTYFTIAL-------PFMYRAIANSFEAINl 161
Cdd:COG1178   88 GRRLLRWLLLLPLALPPYVVALAWIALFGPNGLlntllrALFGLEPPDIYGLGGIILvlvlfnyPYVYLLLRAALRSID- 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 162 HDLMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILvGTRYETL--QIYLYNMRQTSGHFTSALV 239
Cdd:COG1178  167 ASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL-GGGYTTLttAIYQAWLGDFDLGAAAALA 245

                        250       260
                 ....*....|....*....|
gi 490870576 240 MTYFLFIFLLTWLASRFSQG 259
Cdd:COG1178  246 LVLLLLVLLLLLLERRLRRR 265
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 19-227 7.04e-13

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 66.71  E-value: 7.04e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  19 IMMIPILATFIYSIS---SRWGATILPDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLPAIFVVFYY-FPK 94
Cdd:COG3833   28 IALFPILWVVSASFNpggSLYSSSLIPENFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRFrFKG 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  95 LDKVMNILILLPFaVPPVVSSVGLLQLYADseISLIGTPWILIGTYFTIALPFMYRAIANSFEAINlHDLMDAAHLLGAS 174
Cdd:COG3833  108 RKAGLLALLLLQM-FPAFLALVALYLLLSA--LGLLNTLLGLILVYLGGAIPFNTWLMKGYFDTIP-KELDEAAKIDGAS 183

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 490870576 175 TTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTR-YETLQIYLYNM 227
Cdd:COG3833  184 HFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPeNYTLAVGLYSF 237
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
16-258 2.42e-10

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 59.38  E-value: 2.42e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  16 IVGIMMIPILATFIYSISSRWGATILPDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLpAIFVVFYYFPKL 95
Cdd:COG1175   31 LLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGL-LLALLLNRKLRG 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  96 DKVMNILILLPFAVPPVVSSVGLLQLYADS--------------EISLIGTP----WILIGTYFTIALPFMYRAIANSFE 157
Cdd:COG1175  110 RGFFRTLFFLPWVISPVVVALIWKWLFNPDygllnallgalglePINWLGDPslalPAVIIVTVWKGTGFNMLIFLAGLQ 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 158 AINlHDLMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVG----TRYETLQIYLYNMRQTSGH 233
Cdd:COG1175  190 SIP-RELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGggpgNSTTTLVLYIYQTAFQQFD 268

                        250       260
                 ....*....|....*....|....*..
gi 490870576 234 F--TSALVMTYFLFIFLLTWLASRFSQ 258
Cdd:COG1175  269 FgyASAIAVVLFLIILVLTLLQLRLLR 295
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 63-251 2.69e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.06  E-value: 2.69e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  63 FGRSLFICVAALSLSVVLVLPAIFVVFYYFPKLDKVMNILILLPFAVPPVVSSVGLLQLYADSEISLIGTPWILIG--TY 140
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPAliLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 141 FTIALPFMYRAIANSFEAINlHDLMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTRYETL 220
Cdd:cd06261   81 LLLIAPFARLIRRAALESIP-KDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                        170       180       190
                 ....*....|....*....|....*....|.
gi 490870576 221 QIYLYNMRQTSGHFTSALVMTYFLFIFLLTW 251
Cdd:cd06261  160 GTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 19-256 3.35e-09

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 55.86  E-value: 3.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   19 IMMIPILATFIYSISSRWGAtilpdgftldwYINLLTDPRFLQAFGRSLFICVAALSLSVVLVLPAIFVVFYYFPKLDKV 98
Cdd:TIGR02140  16 LLLLPLALIFQEAFEKGFGV-----------FFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   99 MNILILLPFAVPPVVSSVGLLQLY----------ADSEISLI-GTPWILIGTYFtIALPFMYRAIANSFEAINLHDlMDA 167
Cdd:TIGR02140  85 LLTIIDLPFSVSPVVAGLIFVLLYgsqgwlgpwlEDLDIKIIfSLPGIVLATMF-VTCPFVARELIPVMEEQGTEQ-EEA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  168 AHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEF-----VFANILVGTRYETLQI-YLYNMRQTSGHFTSALVMT 241
Cdd:TIGR02140 163 ALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFgavsvVSGHIRGKTNTLPLHVeLLYNEYQSYAAFAAASLLA 242

                         250
                  ....*....|....*
gi 490870576  242 yflFIFLLTWLASRF 256
Cdd:TIGR02140 243 ---LLALVTLVLKAI 254
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 1-227 3.52e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 55.76  E-value: 3.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   1 MNTVNTRFHKTVVYSIvgiMMIPILATFIYSI-SSRWGATIlpDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVV 79
Cdd:PRK09500   1 MGRLLRGGFMTLVYAY---LYIPIIILIVNSFnSSRFGINW--KGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  80 L-VLPAIFVVFYYFPkLDKVMNILILLPFAVPPVVSSVGLLQLYADSEISLigTPWILIGTYFTIALPFMYRAIANSFEA 158
Cdd:PRK09500  76 IgSLTAVALYRYRFR-GKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQL--GFWSLLFAHITFCLPFVVVTVYSRLKG 152

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490870576 159 INLHdLMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTRYETLQIYLYNM 227
Cdd:PRK09500 153 FDVR-MLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSM 220
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 5-216 1.04e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 48.92  E-value: 1.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   5 NTRFHKTVVYSIVG----IMMIPILATFIYSISSRWGATILPDGFTLDWYINLLtDPRFLQAFGRSLFICVAALSLSVVL 80
Cdd:PRK09497   4 TSKFQNVVIVTIVGwlvlFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLL-DPLYAEVLLHSLNMALIATLACLVL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  81 VLPAIFVVFYYFPKLDKVMNILILLPFAVPPVVSSVGLLQLYA---------------DSEISLIGTPWILIGTYFTIAL 145
Cdd:PRK09497  83 GYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLStkgylnefllwlgviDTPIRIMFTESAVIIGLVYILL 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490870576 146 PFMYRAIANSFEAINLhDLMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTR 216
Cdd:PRK09497 163 PFMVLPLYSSIEKLDK-PLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAK 232
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 16-258 1.79e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 48.52  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   16 IVGIMMIPILATFIYSISSRWGATILPDGFtldwyINLLTDPRFLQAFGRSLFICVAALSLSVVLVLPAIFVVFYYFPKL 95
Cdd:TIGR03262  14 LLLFLLLPLLALLTKSVYDSDGDFIGLANF-----AEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   96 DKVMNILILLPFAVPPVVSSVGLLQLYADSEI--------SLIGTPWILIGTYFTiALPFMYRAIANSFEAINlHDLMDA 167
Cdd:TIGR03262  89 KGAFRLVALLPLLAPSLLPAISLIYLFGNQGLlkgllggfSIYGFWGIVIGEVFY-TFPHALMILVTALSLAD-GRLYEA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  168 AHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANIlVGTRYETLQIYLYNMRQTSGHF-TSALVMTYFLFI 246
Cdd:TIGR03262 167 ARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKV-IGGDYNVLATDIYKQVIGQQNFpMGAVVGVLLLLP 245

                         250
                  ....*....|..
gi 490870576  247 FLLTWLASRFSQ 258
Cdd:TIGR03262 246 ALLAFGIDRAIQ 257
cysT CHL00187
sulfate transport protein; Provisional
 11-206 5.73e-06

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 46.16  E-value: 5.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  11 TVVYSIVGIMMiPILATFIYSISSRWGAtilpdgftldwYINLLTDPRFLQAFGRSLFI-CVAALSLSVVLVLPAIFVVF 89
Cdd:CHL00187  17 SLSYIIFLLVL-PILALLIKASQQPWSD-----------FLQKATEPIALSAYSLTLSMaLIAALINGFFGLLIAWVLVR 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  90 YYFPKlDKVMNILILLPFAVPPVVSSVGLLQLYADS----------EISLIGTPW-ILIGTYFtIALPFMYRAIANSFEA 158
Cdd:CHL00187  85 YNFPG-KRLLDAAVDLPFALPTSVAGLTLATVYGDNgwighllshlGIQIVFTKLgVLLAMIF-VSFPFVVRTIQPVLQE 162

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 490870576 159 INlHDLMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEF 206
Cdd:CHL00187 163 IE-KELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
modB PRK09421
molybdate ABC transporter permease subunit;
73-232 1.79e-05

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 44.53  E-value: 1.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  73 ALSLSVVLV-----LP-AIFVVF----YYFPKlDKVMNILILLPFAVPPVVssVGLLQLYADSEISLIGTP---WILIGT 139
Cdd:PRK09421  12 LLSLKVSSVavlfsLPfGILVAWllarCRFPG-KSLLDSLLHLPLVLPPVV--TGYLLLISMGRRGFIGQWlyeWFGISF 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 140 YFT----------IALPFMYRAIANSFEAINLHdLMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEF--- 206
Cdd:PRK09421  89 AFSwrgaalaaavMAFPLMVRAIRLSLEAVDRK-LEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFgat 167

                        170       180
                 ....*....|....*....|....*...
gi 490870576 207 --VFANILVGTRyeTLQIYLYNMRQTSG 232
Cdd:PRK09421 168 itFVSNIPGETQ--TIPSAMYTLIQTPG 193
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 38-189 1.89e-05

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 45.21  E-value: 1.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  38 ATILPDGFTLDWyINLLTDPRFLQAFGRSLFICVAA----LSLSVVLVLPAIFVVFYYFPKLDKVMNILILLPFAVPPVV 113
Cdd:PRK09433 297 LAVVVSGLNASL-LRVLAQPALWQALWTSLRIALAAallaVVLTMMLLWSSRELRLRQRKLAAQALELSGMLILAMPGIV 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 114 SSVG---LLQLYADSEISLigtPWILIGTYFTIALPFMYRAIANSFeainlHDLMDAAHLLGAST----TKAFLLIILPN 186
Cdd:PRK09433 376 LATGlflLLRNTTDLPASA---LGIVILTNALMALPYALRVLEPPM-----RDIAARYGRLCQSLgirgWSRLRLIELRA 447


                 ...
gi 490870576 187 LKK 189
Cdd:PRK09433 448 LRR 450
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 84-261 9.37e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 41.90  E-value: 9.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   84 AIFVVFYYFPKLDKVMNILILLPFAVPPVVssVGLLQLYADSEISLIGTPWILIGTYFTIALPFMYRAIANSFEAINlHD 163
Cdd:pfam00528   5 GIIAALRRGRRLDRLLRPLIDLLQALPSFV--LAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLP-SD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  164 LMDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANIL---VGTRYETLQIYLYNMRQTSGHFTSALVM 240
Cdd:pfam00528  82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswPGLGLLLIEAILGYDYPEIQGPVLAAAL 161

                         170       180
                  ....*....|....*....|.
gi 490870576  241 TYFLFIFLLTWLASRFSQGTK 261
Cdd:pfam00528 162 ILLLLNLLVDILQRLLDPRVR 182
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
17-241 9.89e-05

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 42.82  E-value: 9.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  17 VGIMMIPILATFiysissrwgATILPDGFTLDWyiNLLTDPRFLQAFGRSLFICVAALSLSVVL-VLPAIFVVFYYFPKL 95
Cdd:PRK11602  31 AFILVVPMIYIF---------VQAFSKGLMPVL--QNLADPDMLHAIWLTVLIALIAVPVNLVFgILLAWLVTRFNFPGR 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  96 DKVMNiLILLPFAVPPVVSSVGLLQLYADS----------EISLIGT-PWILIGTYFtIALPFMYRAIANSFEAINLHDl 164
Cdd:PRK11602 100 QLLLT-LLDIPFAVSPVVAGLVYLLFYGSNgplggwldehNLQLMFSwPGMVLVTIF-VTCPFVVRELVPVMLSQGSQE- 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 165 MDAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGT-RYET----LQI-YLYNMRQTSGHFTSAL 238
Cdd:PRK11602 177 DEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSiRGETlslpLQIeLLEQDYNTVGSFTAAA 256


                 ...
gi 490870576 239 VMT 241
Cdd:PRK11602 257 LLT 259
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
46-258 1.40e-04

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 42.43  E-value: 1.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  46 TLDWYINLLTDPRFLQAFGRSLFIC-VAALSLSVVLVLPAIFVVFYYFPKlDKVMNILILLPFAVPPVVSSVGLLQLY-- 122
Cdd:PRK10971  43 SWAQYWEVITNPQVVAAYKVTLLSAfVASIFNAVFGLLMAWILTRYRFPG-RTLLDALMDLPFALPTAVAGLTLASLFsv 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 123 --------ADSEISLIGTpW--ILIGTYFTiALPFMYRAIANSFEAINlHDLMDAAHLLGASTTKAFLLIILPNLKKGLM 192
Cdd:PRK10971 122 ngwygewlAKFDIKVTYT-WlgIAVAMAFT-SIPFVVRTVQPVLEELG-PEYEEAAETLGATRWQSFRKVVLPELSPALL 198

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490870576 193 ASLFLSFSFLLGE-----FVFANILVGTRYETLQIYL----YNMRQTSGhFTSALVMTYFLFIFLLTWLASRFSQ 258
Cdd:PRK10971 199 AGVALSFTRSLGEfgaviFIAGNIAWKTEVTSLMIFVrlqeFDYPAASA-IASVILAASLLLLFSINTLQSRFGR 272
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 1-185 6.76e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 40.13  E-value: 6.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   1 MNTVNTRFHKTVVYSIVGIMMIpILATFIYSISSRWGATILPD-GFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVV 79
Cdd:COG0600    1 MTTSTRRRLRRLLLPLLSLALL-LALWELAARLGLVPPFLLPSpSAVLAALVELLASGELWEHLLASLLRVLLGFALAAL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  80 LVLPaIFVVFYYFPKLDKVMNILILLPFAVPPVVSSVGLLQLYADSEISLIgtpwILIgtyFTIALPFMYRAIANSFEAI 159
Cdd:COG0600   80 LGVP-LGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKI----FVI---FLGAFFPILLNTAAGVRSV 151

                        170       180
                 ....*....|....*....|....*.
gi 490870576 160 NlHDLMDAAHLLGASTTKAFLLIILP 185
Cdd:COG0600  152 D-PELLELARSLGASRWQILRKVVLP 176
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 23-225 1.16e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 39.45  E-value: 1.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  23 PILATFIYSISSRWGATILpDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVVL-VLPAIFVVFYYFPKLDKVMNI 101
Cdd:PRK10592  26 PMLMLVIYSFNSSKLVTVW-AGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILgTIAAVVMVRFGRFRGSNGFAF 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 102 LILLPFAVPPVVSSVGLLQLYAdSEISLIGtpWILIGTYFTIALPFMYRAIANSFEAINL------HDLMDAAHLLGAST 175
Cdd:PRK10592 105 MITAPLVMPDVITGLSLLLLFV-ALAHAIG--WPADRGMLTIWLAHVTFCTAYVAVVISSrlreldRSIEEAAMDLGATP 181

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 490870576 176 TKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTRYETLQIYLY 225
Cdd:PRK10592 182 LKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVF 231
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 8-248 3.63e-03

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 38.36  E-value: 3.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576    8 FHKTVVYSIVGIMMIPILATFIYSISSRWGATILpdgftldwyinllTDPRFLQAFGRSLFICVAA----LSLSVVLVLP 83
Cdd:TIGR01253 283 CDILLILLALFFLFPPLLAIIIDALNSRNLLEVL-------------ANPQLWQALGTSLRIALAAallaLTLAIALLLL 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576   84 AIFVVFYYFPKLDKVMNILILLPFAVPPVVSSVGLLQLYADSEISLIGTPWILIGTYFTIALPFMYRAIANSFEAINLHD 163
Cdd:TIGR01253 350 SRELEALHKMKAGQFIEMAGMLILAIPGIVLAMGFFLLLNDRDFLNIDADGIVIFCNALMAIPFALKILEAPFHDIMARY 429

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  164 LMdAAHLLGASTTKAFLLIILPNLKKGLMASLFLSFSFLLGEFVFANILVGTRYETLQIYLY----NMRQTSGHFTSA-- 237
Cdd:TIGR01253 430 EM-LCNSLGIEGWQRFKLIELKALKAPLAQAFAFACALSIGDFGAIALFGNDDFRSLPFLLYqqigNYRNQDAAVTAGil 508

                         250
                  ....*....|.
gi 490870576  238 LVMTYFLFIFL 248
Cdd:TIGR01253 509 LLLCFILFAFI 519
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 42-193 5.47e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 37.29  E-value: 5.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576  42 PDGFTLDWYINLLTDPRFLQAFGRSLFICVAALSLSVVL-VLPAIFVVFYYFPKLDKVMNIL--------ILLPFAVPPV 112
Cdd:PRK15050  54 EHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLgVLLALVLAFVPFPGASLVGRFIdtfvafpsFLITLAFTFL 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490870576 113 VSSVGLLQL-------YADSEISLIGTPWILIGTYFTIALPFMYRAIANSFEAINLhDLMDAAHLLGASTTKAFLLIILP 185
Cdd:PRK15050 134 YGSAGSVNIalqrlfgLEAPPLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDA-RQLEAAASLGASPWRVARRVILP 212


                 ....*...
gi 490870576 186 NLKKGLMA 193
Cdd:PRK15050 213 EAWPALAA 220
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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