NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|491513055|ref|WP_005370689|]
View 

MULTISPECIES: peptidoglycan-associated lipoprotein Pal [Photobacterium]

Protein Classification

peptidoglycan-associated lipoprotein( domain architecture ID 10798633)

peptidoglycan-associated lipoprotein is part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity

Gene Ontology:  GO:0051301|GO:0009279
SCOP:  4001470

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 77-180 9.77e-69

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


:

Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 203.95  E-value: 9.77e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055   77 TIFFKFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEGHADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYG 156
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 491513055  157 EEKPLVLGHTDADYAKNRRAVLVY 180
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
 
Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 77-180 9.77e-69

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 203.95  E-value: 9.77e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055   77 TIFFKFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEGHADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYG 156
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 491513055  157 EEKPLVLGHTDADYAKNRRAVLVY 180
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-180 8.68e-68

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 204.33  E-value: 8.68e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055   1 MQLNKILKSLAIALPMMTLAACSSTDSADSSAANQNGTNGGGTSPDQTivtpvdpSGSMSEEQLLEQQLQQLRQEQTIFF 80
Cdd:PRK10802   1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSEGMLGAGTGMDANGG-------NGNMSSEEQARLQMQQLQQNNIVYF 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  81 KFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEGHADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYGEEKP 160
Cdd:PRK10802  74 DLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKP 153

                        170       180
                 ....*....|....*....|
gi 491513055 161 LVLGHTDADYAKNRRAVLVY 180
Cdd:PRK10802 154 AVLGHDEAAYAKNRRAVLVY 173
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 35-180 2.54e-46

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 153.40  E-value: 2.54e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  35 QNGTNGGGTSPDQTIVTPVDPSGSMSEEQLLEQQLQQLRQEQTIFFKFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEG 114
Cdd:COG2885  146 LAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEG 225

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491513055 115 HADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYGEEKPLVLGHTDADYAKNRRAVLVY 180
Cdd:COG2885  226 HTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 77-179 2.14e-45

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 145.00  E-value: 2.14e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  77 TIFFKFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEGHADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYG 156
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|...
gi 491513055 157 EEKPLVLGHTDADYAKNRRAVLV 179
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIV 105
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 80-173 5.14e-27

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 97.82  E-value: 5.14e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055   80 FKFDNSEIQPEYQAILEAHAAYLR-DHPSIKVIVEGHADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYGEE 158
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKfPELKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 491513055  159 KPLVLGHTDADYAKN 173
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 77-180 9.77e-69

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 203.95  E-value: 9.77e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055   77 TIFFKFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEGHADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYG 156
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 491513055  157 EEKPLVLGHTDADYAKNRRAVLVY 180
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-180 8.68e-68

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 204.33  E-value: 8.68e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055   1 MQLNKILKSLAIALPMMTLAACSSTDSADSSAANQNGTNGGGTSPDQTivtpvdpSGSMSEEQLLEQQLQQLRQEQTIFF 80
Cdd:PRK10802   1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSEGMLGAGTGMDANGG-------NGNMSSEEQARLQMQQLQQNNIVYF 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  81 KFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEGHADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYGEEKP 160
Cdd:PRK10802  74 DLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKP 153

                        170       180
                 ....*....|....*....|
gi 491513055 161 LVLGHTDADYAKNRRAVLVY 180
Cdd:PRK10802 154 AVLGHDEAAYAKNRRAVLVY 173
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 35-180 2.54e-46

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 153.40  E-value: 2.54e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  35 QNGTNGGGTSPDQTIVTPVDPSGSMSEEQLLEQQLQQLRQEQTIFFKFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEG 114
Cdd:COG2885  146 LAAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEG 225

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491513055 115 HADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYGEEKPLVLGHTDADYAKNRRAVLVY 180
Cdd:COG2885  226 HTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 77-179 2.14e-45

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 145.00  E-value: 2.14e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  77 TIFFKFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEGHADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYG 156
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|...
gi 491513055 157 EEKPLVLGHTDADYAKNRRAVLV 179
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIV 105
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 80-173 5.14e-27

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 97.82  E-value: 5.14e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055   80 FKFDNSEIQPEYQAILEAHAAYLR-DHPSIKVIVEGHADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYGEE 158
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKfPELKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 491513055  159 KPLVLGHTDADYAKN 173
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
MotB COG1360
Flagellar motor protein MotB [Cell motility];
78-179 8.06e-22

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 86.82  E-value: 8.06e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  78 IFFKFDNSEIQPEYQAILEAHAAYLRDHPSiKVIVEGHADER--GTPEY--NIALGERRANAVAQYLQALGVPASQLSIV 153
Cdd:COG1360   61 VLFDSGSAELTPEGRELLDKIAAVLAEVPN-RIRVEGHTDNVpiSTARFpsNWELSAARAAAVVRYLIEGGVPPERLSAV 139

                         90       100
                 ....*....|....*....|....*.
gi 491513055 154 SYGEEKPLVLGHTDADYAKNRRAVLV 179
Cdd:COG1360  140 GYGDTRPLAPNDTPEGRARNRRVEIV 165
PRK09039 PRK09039
peptidoglycan -binding protein;
78-175 2.85e-15

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 71.92  E-value: 2.85e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  78 IFFKFDNSEIQPEYQAILEAHAAYLRD-----HPSIKVI--VEGHADER---GTPEY--NIALGERRANAVAQYLQALGV 145
Cdd:PRK09039 226 VLFPTGSAELNPEGQAEIAKLAAALIElakeiPPEINWVlrVDGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGV 305

                         90       100       110
                 ....*....|....*....|....*....|
gi 491513055 146 PASQLSIVSYGEEKPLVLGHTDADYAKNRR 175
Cdd:PRK09039 306 PADRLAAAGFGEFQPLDPGDTPEARARNRR 335
PRK09967 PRK09967
OmpA family protein;
77-179 5.54e-10

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 55.37  E-value: 5.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  77 TIFFKFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEGHADERGTPEYNIALGERRANAVAQ-YLQALGVPASQLSIVSY 155
Cdd:PRK09967  53 AILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADaWAMGGQIPRSNLTTQGL 132

                         90       100
                 ....*....|....*....|....
gi 491513055 156 GEEKPLVLGHTDADYAKNRRAVLV 179
Cdd:PRK09967 133 GKKYPIASNKTAQGRAENRRVAVV 156
PRK10808 PRK10808
outer membrane protein A; Reviewed
 78-179 6.51e-10

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 57.01  E-value: 6.51e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  78 IFFKFDNSEIQPEYQAILEAHAAYLR--DHPSIKVIVEGHADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSY 155
Cdd:PRK10808 226 VLFNFNKATLKPEGQQALDQLYSQLSnlDPKDGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGM 305

                         90       100
                 ....*....|....*....|....
gi 491513055 156 GEEKPlVLGHTdADYAKNRRAVLV 179
Cdd:PRK10808 306 GKSNP-VTGNT-CDNVKPRAALID 327
PRK08126 PRK08126
hypothetical protein; Provisional
 109-175 1.42e-09

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 55.85  E-value: 1.42e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491513055 109 KVIVEGHADE-----RGTPEyNIALGERRANAVAQYLQALGVPASQLSIVSYGEEKPLVLGHTDADYAKNRR 175
Cdd:PRK08126 355 KVTVTGHTDNqpirsAQFAS-NLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRR 425
motB PRK08457
flagellar motor protein MotB; Reviewed
 106-177 2.50e-09

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 54.72  E-value: 2.50e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491513055 106 PSIKVIVEGHAD--ERGTPEY--NIALGERRANAVAQYLQALGVPASQLSIVSYGEEKPLVLGHTDADYAKNRRAV 177
Cdd:PRK08457 154 KQVKINVRGYTDnsPLNKSRYkdHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVE 229
PRK09040 PRK09040
hypothetical protein; Provisional
 78-175 2.83e-09

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 54.25  E-value: 2.83e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  78 IFFKFDNSEIQPEYQAILEAHA----AYLRDHPSIkVIVEGHADER----GTPEY--NIALGERRANAVAQYLQALGVPA 147
Cdd:PRK09040  90 VLFALNSDQLQPEGRELLKSLAgplaAYLRARDEI-LMVSGFTDDQpvraGNRRFadNWELSAQRALTVTRALIDAGVPA 168

                         90       100
                 ....*....|....*....|....*...
gi 491513055 148 SQLSIVSYGEEKPLVLGHTDADYAKNRR 175
Cdd:PRK09040 169 SSVFAAAFGSEQPVASNADDEGRAKNRR 196
PRK10510 PRK10510
OmpA family lipoprotein;
82-175 5.55e-09

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 53.34  E-value: 5.55e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  82 FDNS--EIQPEYQAILEAHAAYLRDHPSIKVIVEGHADERGTPEYNIALGERRANAVAQYLQALGVPASQLSIVSYGEEK 159
Cdd:PRK10510 116 FDSSsaTLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGPAN 195

                         90
                 ....*....|....*.
gi 491513055 160 PLVLGHTDADYAKNRR 175
Cdd:PRK10510 196 PIASNSTAEGKAQNRR 211
motB PRK08944
flagellar motor protein MotB; Reviewed
 80-175 3.95e-08

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 51.55  E-value: 3.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  80 FKFDNSEIQPEYQAILEAHAAYLRDHPSIkVIVEGHADERGTP--EY--NIALGERRANAVAQYLQAL-GVPASQLSIVS 154
Cdd:PRK08944 183 FPSGSAFLQPKFKPVVRKIGELLKDVPGI-ITVSGHTDNVPISseLYrsNWDLSSARAVAVAHELLKVkGFDPQRLKVVG 261

                         90       100
                 ....*....|....*....|.
gi 491513055 155 YGEEKPLVLGHTDADYAKNRR 175
Cdd:PRK08944 262 MADTQPLVPNDTAENRARNRR 282
PRK06925 PRK06925
flagellar motor protein MotB;
78-179 5.10e-08

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 50.92  E-value: 5.10e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  78 IFFKFDNSEIQPEYQAILEAHAAYLRDHPSIkVIVEGHADERGTPEY----NIALGERRANAVAQYL-QALGVPASQLSI 152
Cdd:PRK06925 120 VLFETGEADILKQAEPFLHKIGVLLSTIPND-IKVEGHTDSRPISTYrypsNWELSAARASSVIRYFtSKEKLDSSRFIA 198

                         90       100
                 ....*....|....*....|....*..
gi 491513055 153 VSYGEEKPLVLGHTDADYAKNRRAVLV 179
Cdd:PRK06925 199 VGYADTKPVVPNTTEENMQENRRVEIV 225
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 78-178 8.93e-08

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 50.06  E-value: 8.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  78 IFFKFDNSEIQPEYQAILEAHAAYLRDHPSiKVIVEGHADERgtPEYNIAL-------GERRANAVAQYLQALGVPASQL 150
Cdd:PRK06742 117 LIFDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSR--PIHNDKFpsnwelsSARAANMIHHLIEVYNVDDKRL 193

                         90       100
                 ....*....|....*....|....*...
gi 491513055 151 SIVSYGEEKPLVLGHTDADYAKNRRAVL 178
Cdd:PRK06742 194 AAVGYADTKPVVPNDSPQNWEKNRRVVI 221
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 82-179 1.04e-07

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 50.39  E-value: 1.04e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  82 FDNSEIQPEYQA--ILEAHAAYLRDHPSiKVIVEGHADER--GTPEY--NIALGERRANAVAQYLQALGVPASQLSIVSY 155
Cdd:PRK09038 137 FGSGDAMLSDQAfaILEKVAEVLKPAPN-PIHVEGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVAPSRLAAVGY 215

                         90       100
                 ....*....|....*....|....
gi 491513055 156 GEEKPLVLGHTDADYAKNRRAVLV 179
Cdd:PRK09038 216 GEFQPVADNDTAEGRARNRRVVLV 239
motB PRK06667
flagellar motor protein MotB; Validated
 79-175 2.63e-05

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 43.24  E-value: 2.63e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  79 FFKFDNSEIQ-PEYQAILEAHAAYLRDHP--SIKVIVEGHADERGTPEYNI-----ALGERRA-NAVAQYLQALGVPASQ 149
Cdd:PRK06667 128 FFYPGSAEVKlEENRETLQKIASFIGFLDlaGRNFRIEGHTDNVDVNPEGPwksnwELSGARAvNMLEYILNYGDQSESW 207

                         90       100
                 ....*....|....*....|....*.
gi 491513055 150 LSIVSYGEEKPLVLGHTDADYAKNRR 175
Cdd:PRK06667 208 FQVSGFAGSRPLATEDTPEGRAYNRR 233
motB PRK07734
flagellar motor protein MotB; Reviewed
 78-175 1.76e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 37.80  E-value: 1.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  78 IFFKFDNSEIQPEYQAILEAHAAYLRDHPSIKVIVEGHADErgTP------EYNIALGERRA-NAVAQYLQALGVPASQL 150
Cdd:PRK07734 144 ILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDN--VPianaqfASNWELSVMRAvNFMQVLLENKELDPEKF 221

                         90       100
                 ....*....|....*....|....*
gi 491513055 151 SIVSYGEEKPLVLGHTDADYAKNRR 175
Cdd:PRK07734 222 SAKGYGEYKPIASNDTAEGRAKNRR 246
motB PRK12799
flagellar motor protein MotB; Reviewed
 80-179 2.92e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 37.39  E-value: 2.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491513055  80 FKFDNSEIQPEYQAILEAHAAYLRDHPSiKVIVEGHADE----RGTPEY-NIALGERRANAVAQYLQALGVPASQ-LSIV 153
Cdd:PRK12799 160 FKMGSAQVEPYMRDILRAIAPILNDIPN-KLSLSGHTDDlpyaRGERGYsNWELSADRANASRRELLAGGLDEGKiLRVV 238

                         90       100
                 ....*....|....*....|....*.
gi 491513055 154 syGEEKPLVLGHTDADYAKNRRAVLV 179
Cdd:PRK12799 239 --GMASTMRLKEQASDDPVNRRISIL 262
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH