NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|491535503|ref|WP_005393123|]
View 

MULTISPECIES: flagellar hook protein FlgE [Vibrio]

Protein Classification

flagellar hook protein FlgE( domain architecture ID 11481483)

flagellar hook protein FlgE functions as a nano-sized universal joint, which is essential for dynamic and efficient bacterial motility and taxis

CATH:  2.60.98.20
Gene Ontology:  GO:0071973
SCOP:  4003129

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-437 1.09e-164

flagellar hook protein FlgE; Validated


:

Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 469.32  E-value: 1.09e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   1 MSYVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNaKTTPGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:PRK05682   2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  81 LRVSGTGFFAVAKerltPQQNELTRNGAFHLNKENYMVTANDEFLLGYQVDPSSGEVSS--YEPQPINIPAEFGKPKQTA 158
Cdd:PRK05682  81 LAISGNGFFVVSN----GGNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPPTvgAGLVPLNIPTTALAPKATT 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 159 NIEVGVNLPANGDLKdptqfdFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKdqTQPNTWNTYYTVTDKEGEKPlnvaag 238
Cdd:PRK05682 157 SGTFQGNLPSTAAFD------PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTT------ 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 239 daqtPTGHVGHTMKFNNDGTLASLNNGQPitsvalgdpaTNTTPVDMNGADPAQTLNFGLGSATQFAAPFELTKFDEDGA 318
Cdd:PRK05682 223 ----ATGTGTTTLTFDSNGALTTTTSPTT----------FNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGY 288

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 319 TTGFLTKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTINNGMLEQS 398
Cdd:PRK05682 289 APGTLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESS 368

                        410       420       430
                 ....*....|....*....|....*....|....*....
gi 491535503 399 NIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 437
Cdd:PRK05682 369 NVDLSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
 
Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-437 1.09e-164

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 469.32  E-value: 1.09e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   1 MSYVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNaKTTPGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:PRK05682   2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  81 LRVSGTGFFAVAKerltPQQNELTRNGAFHLNKENYMVTANDEFLLGYQVDPSSGEVSS--YEPQPINIPAEFGKPKQTA 158
Cdd:PRK05682  81 LAISGNGFFVVSN----GGNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPPTvgAGLVPLNIPTTALAPKATT 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 159 NIEVGVNLPANGDLKdptqfdFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKdqTQPNTWNTYYTVTDKEGEKPlnvaag 238
Cdd:PRK05682 157 SGTFQGNLPSTAAFD------PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTT------ 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 239 daqtPTGHVGHTMKFNNDGTLASLNNGQPitsvalgdpaTNTTPVDMNGADPAQTLNFGLGSATQFAAPFELTKFDEDGA 318
Cdd:PRK05682 223 ----ATGTGTTTLTFDSNGALTTTTSPTT----------FNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGY 288

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 319 TTGFLTKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTINNGMLEQS 398
Cdd:PRK05682 289 APGTLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESS 368

                        410       420       430
                 ....*....|....*....|....*....|....*....
gi 491535503 399 NIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 437
Cdd:PRK05682 369 NVDLSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-437 5.53e-148

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 426.90  E-value: 5.53e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   1 MS-YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQVAQQFHEGSSIYTNNPM 79
Cdd:COG1749    3 MSfNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLSGANPTQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  80 DLRVSGTGFFAVAKerlTPQQNELTRNGAFHLNKENYMVTANDEFLLGYQVDPSsGEV--SSYEPQPINIPAEFGKPKQT 157
Cdd:COG1749   83 DLAISGNGFFVVSD---SGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADAD-GTIpdTGGGLEPIQIPTGQLPAKAT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 158 ANIEVGVNLPANGDLKDpTQFDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKdqTQPNTWNTYYTVTDKegekplNVAA 237
Cdd:COG1749  159 TKVTLGGNLPADATVPT-APFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTK--TGANTWTVYVTVDGA------DVTG 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 238 GDAQTPTGhvghTMKFNNDGTLASLNNGQPITsvalgdpatntTPVDMNGADPaQTLNFGLGSATQFAAPFELTKFDEDG 317
Cdd:COG1749  230 GTGATGTG----TLTFDSNGKLTSPTSGGPGT-----------LTLTVNGAAP-QTITLDLSGLTQYASSFSVTSLTQDG 293

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 318 ATTGFLTKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTINNGMLEQ 397
Cdd:COG1749  294 YAAGTLTGVSIDDDGVVTATYSNGQTRPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALES 373

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|
gi 491535503 398 SNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 437
Cdd:COG1749  374 SNVDLAEELVNMIVAQRAYQANAKVITTSDEMLQTLVNLK 413
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-419 1.78e-54

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 180.91  E-value: 1.78e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503    1 MSYVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNakTTPGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGS--GQVGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   81 LRVSGTGFFAVakerLTPQQNE-LTRNGAFHLNKENYMVTANdefllGYQVDPssgevssyepqpinipaefgkpkqtan 159
Cdd:TIGR03506  80 LAISGDGFFVV----QTPDGSEaYTRAGSFKLDADGYLVTSD-----GYPLLD--------------------------- 123

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  160 ievgvnlpangdlkdptqfdfsdpdtynrstsstiydsmgqsyklttyylkdqtqpntwntyytvtdkegekplnvaagd 239
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  240 aqtptghvghtmkfnndgtlaslNNGQPITsvalgdpatnttpvdmngadpaqtlnfglgsatqfaapfeltkFDEDGat 319
Cdd:TIGR03506 124 -----------------------WGGGPIT-------------------------------------------LPPDA-- 135

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  320 tgflTKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTINNGMLEQSN 399
Cdd:TIGR03506 136 ----GSVSIGEDGTVSATYSNGQTVELGQIALANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSN 211

                         410       420
                  ....*....|....*....|
gi 491535503  400 IDMTQELVDLISAQRNFQAN 419
Cdd:TIGR03506 212 VDLAEELVNMISAQRAYQAN 231
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 187-317 3.08e-17

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 76.67  E-value: 3.08e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  187 NRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWNTYYTVTDKEGekPLNVAAGDAQTPTGHVGHTMKFNNdgtlaslnngq 266
Cdd:pfam07559   1 NYSTSVTVYDSLGNSHTLTVYFVKTATGPNTWEVYVTVDGEVG--DGDGTAGTASTAGGLMTGTLTFDS----------- 67

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 491535503  267 pitsvalgdpatnttpvdmngadpaQTLNFGLGSATQFAAPFELTKFDEDG 317
Cdd:pfam07559  68 -------------------------ITLDFGLTGSTQYASAFSVTSLSQDG 93
 
Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-437 1.09e-164

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 469.32  E-value: 1.09e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   1 MSYVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNaKTTPGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:PRK05682   2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  81 LRVSGTGFFAVAKerltPQQNELTRNGAFHLNKENYMVTANDEFLLGYQVDPSSGEVSS--YEPQPINIPAEFGKPKQTA 158
Cdd:PRK05682  81 LAISGNGFFVVSN----GGNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPPTvgAGLVPLNIPTTALAPKATT 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 159 NIEVGVNLPANGDLKdptqfdFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKdqTQPNTWNTYYTVTDKEGEKPlnvaag 238
Cdd:PRK05682 157 SGTFQGNLPSTAAFD------PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTT------ 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 239 daqtPTGHVGHTMKFNNDGTLASLNNGQPitsvalgdpaTNTTPVDMNGADPAQTLNFGLGSATQFAAPFELTKFDEDGA 318
Cdd:PRK05682 223 ----ATGTGTTTLTFDSNGALTTTTSPTT----------FNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGY 288

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 319 TTGFLTKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTINNGMLEQS 398
Cdd:PRK05682 289 APGTLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESS 368

                        410       420       430
                 ....*....|....*....|....*....|....*....
gi 491535503 399 NIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 437
Cdd:PRK05682 369 NVDLSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-437 5.53e-148

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 426.90  E-value: 5.53e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   1 MS-YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQVAQQFHEGSSIYTNNPM 79
Cdd:COG1749    3 MSfNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLSGANPTQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  80 DLRVSGTGFFAVAKerlTPQQNELTRNGAFHLNKENYMVTANDEFLLGYQVDPSsGEV--SSYEPQPINIPAEFGKPKQT 157
Cdd:COG1749   83 DLAISGNGFFVVSD---SGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADAD-GTIpdTGGGLEPIQIPTGQLPAKAT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 158 ANIEVGVNLPANGDLKDpTQFDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKdqTQPNTWNTYYTVTDKegekplNVAA 237
Cdd:COG1749  159 TKVTLGGNLPADATVPT-APFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTK--TGANTWTVYVTVDGA------DVTG 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 238 GDAQTPTGhvghTMKFNNDGTLASLNNGQPITsvalgdpatntTPVDMNGADPaQTLNFGLGSATQFAAPFELTKFDEDG 317
Cdd:COG1749  230 GTGATGTG----TLTFDSNGKLTSPTSGGPGT-----------LTLTVNGAAP-QTITLDLSGLTQYASSFSVTSLTQDG 293

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 318 ATTGFLTKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTINNGMLEQ 397
Cdd:COG1749  294 YAAGTLTGVSIDDDGVVTATYSNGQTRPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALES 373

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|
gi 491535503 398 SNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 437
Cdd:COG1749  374 SNVDLAEELVNMIVAQRAYQANAKVITTSDEMLQTLVNLK 413
flgE PRK06803
flagellar basal body protein FlaE;
1-435 2.71e-85

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 266.64  E-value: 2.71e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   1 MSY-VSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSlftnakttPGGGAQASQVAQQFHEGSSI-YTNNP 78
Cdd:PRK06803   1 MSFnIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGG--------QPGGVEVSSVSQNFSKDGSLtYTGRG 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  79 MDLRVSGTGFFAVakeRLTPQQNELTRNGAFHLNKENYMVTANDEFLLGYQVDPS----SGEVSSYEPQPINIPAefgkp 154
Cdd:PRK06803  73 LDLAISGGGFFVL---KESDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAgnlqTGNVSDLQVQTASLPA----- 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 155 KQTANIEVGVNLPANGDLKDP--TQFDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKdqTQPNTWNTYYTVtdkegekp 232
Cdd:PRK06803 145 KATDQLDFVANLDASVTPIDPsvSPFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVK--TATNEWAVHYTV-------- 214

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 233 lnvaagDAQTPTGHVGHTMKFNNDGTLASLNNgqpiTSVALGDPATnttpvdMNGADPAQtLNFGLGSATQFAAPFELTK 312
Cdd:PRK06803 215 ------DGGDVTPPLGHTLQFDDTGALIPGKG----STINLHGTFN------PAGASDYD-IDIDYTGSTQYAADFNNSR 277

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 313 FDEDGATTGFLTKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTINN 392
Cdd:PRK06803 278 NKSNGYTSGELNGVRIEDNGMVYATYTNGQRQLQGQVVLANFANPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTS 357

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|...
gi 491535503 393 GMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 435
Cdd:PRK06803 358 GALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALFN 400
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-419 1.78e-54

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 180.91  E-value: 1.78e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503    1 MSYVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNakTTPGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGS--GQVGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   81 LRVSGTGFFAVakerLTPQQNE-LTRNGAFHLNKENYMVTANdefllGYQVDPssgevssyepqpinipaefgkpkqtan 159
Cdd:TIGR03506  80 LAISGDGFFVV----QTPDGSEaYTRAGSFKLDADGYLVTSD-----GYPLLD--------------------------- 123

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  160 ievgvnlpangdlkdptqfdfsdpdtynrstsstiydsmgqsyklttyylkdqtqpntwntyytvtdkegekplnvaagd 239
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  240 aqtptghvghtmkfnndgtlaslNNGQPITsvalgdpatnttpvdmngadpaqtlnfglgsatqfaapfeltkFDEDGat 319
Cdd:TIGR03506 124 -----------------------WGGGPIT-------------------------------------------LPPDA-- 135

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  320 tgflTKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTINNGMLEQSN 399
Cdd:TIGR03506 136 ----GSVSIGEDGTVSATYSNGQTVELGQIALANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSN 211

                         410       420
                  ....*....|....*....|
gi 491535503  400 IDMTQELVDLISAQRNFQAN 419
Cdd:TIGR03506 212 VDLAEELVNMISAQRAYQAN 231
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
3-437 1.98e-41

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 147.65  E-value: 1.98e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYS------NSLFTNAKTTP-----GGGAQASQVAQQFHEGS 71
Cdd:COG4786    2 YTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLYqlirrpGAPSSQGTQTPvglqlGTGVRVAATQTDFTQGS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  72 SIYTNNPMDLRVSGTGFFAVakerLTPQQNE-LTRNGAFHLNKENYMVTANdefllGYQVDPSSGevssyepqPINIPae 150
Cdd:COG4786   82 LQQTGNPLDLAIEGDGFFQV----QTPDGETaYTRDGSFQLDADGQLVTSD-----GYPVLPENG--------PITIP-- 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 151 fgkpkqtanievgvnlpangdlkdptqfdfsdpdtynrstsstiydsmgqsyklttyylkdqtqpntwntyytvtdkege 230
Cdd:COG4786      --------------------------------------------------------------------------------

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 231 kplnvaagdaqtptghvghtmkfnndgtlaslNNGQPITsvalgdpatnttpvdmngadpaqtlnfglgsatqfaapfel 310
Cdd:COG4786  143 --------------------------------EDATSIT----------------------------------------- 149

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 311 tkfdedgattgfltkvdFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTI 390
Cdd:COG4786  150 -----------------ISEDGTVSVTLADGDGQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDGLGTL 212

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*..
gi 491535503 391 NNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 437
Cdd:COG4786  213 RQGYLEGSNVDVVEEMVDMIEAQRAYEANSKVIQTADEMLGKANNLR 259
flgE PRK12637
flagellar hook protein FlgE; Provisional
 5-437 3.16e-40

flagellar hook protein FlgE; Provisional


Pssm-ID: 183641 [Multi-domain]  Cd Length: 473  Bit Score: 149.90  E-value: 3.16e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   5 SLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFtnakttpGGGAQASQVAQQFHEGSSIYTNNPMDLRVS 84
Cdd:PRK12637   6 GLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRV-------GLGVKVSAINQRFTVGNISTTGGEYDMAID 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  85 G-TGFFavakeRLTPQQNEL--TRNGAFHLNKENYMVTANDEFLLGYqvdpSSGEVSSyEPQPINIPAEFGKPKQTANIE 161
Cdd:PRK12637  79 GgKGFF-----RLTDQSGGVfySRNGEFMVDKNFYIVNAQGFRLTGY----PAGGVGA-QPVDLQLPQGNIAPQATSTAG 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 162 VGVNLPANGDLKDPTQ---------------------------------------------------------------- 177
Cdd:PRK12637 149 LQTNLNANAKVIDPNDtpavdgtveldgttyrftnaggtfawvapapldgtynggdiviaggavtgdlasqpgyqpykpl 228

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 178 -----FDFSDPDTYNRSTSSTIYDSMGQSYKLTTYYLKDQT--QPNTWNTYYTVTDKegekPLNVAAGDAQTptghvght 250
Cdd:PRK12637 229 vagipFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAvgTESVYEVYYVLDGQ----PMQVNGGASQT-------- 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 251 MKFNNDGTLAslnNGQPITSVALGDPATNTTPvdmngADPAqTLNFGLGSATQFAAPFElTKFDEDGATTGFLTKVDFDE 330
Cdd:PRK12637 297 LNFDTAGNLL---NQPPTAQVTFANPGGNAAP-----ADPL-AITVSYNGVTQYGSDFA-PKVVQNGYSSGEFMGLSVGK 366

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 331 NGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLI 410
Cdd:PRK12637 367 DGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMI 446

                        490       500
                 ....*....|....*....|....*..
gi 491535503 411 SAQRNFQANSRSLEVHNQLQQNILQIR 437
Cdd:PRK12637 447 VAQRTYQANAQTIKTQDEVMQVLMNMR 473
flgE PRK08425
flagellar hook protein FlgE; Validated
 189-437 5.03e-32

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 129.05  E-value: 5.03e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 189 STSSTIYDSMGQSYKLTTYYLK---DQTQPNTWNTYYTVTDkegekPLNVAAGDAQTPTGHVGHTMKFNNDGTLASLNng 265
Cdd:PRK08425 491 AASIDIYDSLGSKHTLRIEFYKsstTQDGGAEWNMIIIVPE-----PAEINGGSEGRPNNFEGGRLRFNNDGSLAGMN-- 563

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 266 qpitsvalgdPAT-NTTPvdMNGADPAQTLNFGLGSATQFAApfeLTKFD---------EDGATTGFLTKVDFDENGSVM 335
Cdd:PRK08425 564 ----------PPTlQFDP--NNGAAAPQRINLSFGTSGSFDG---LTSVDkisetyaieQDGYTAGDLMDIRFDSDGTIL 628

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 336 GTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRN 415
Cdd:PRK08425 629 GAFTNGRTFALAQVALANFANNAGLQAEGGNVFSQTANSGQAVIGAAGTGGRGSISGSKLEMSNVDLSRSLTQLIVIQRG 708

                        250       260
                 ....*....|....*....|..
gi 491535503 416 FQANSRSLEVHNQLQQNILQIR 437
Cdd:PRK08425 709 FQANSKTITTSDQMLNTLLQLK 730
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 3-437 1.02e-24

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 102.43  E-value: 1.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503    3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFAD-VYSNSLFTNAKTTP-----------GGGAQASQVAQQFHEG 70
Cdd:TIGR02488   3 WTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDlLYQTERQPGAQSSEqqtilpvgvqvGLGVRVVATQKLFTQG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   71 SSIYTNNPMDLRVSGTGFFAVakerLTPQ-QNELTRNGAFHLNKENYMVTANdefllGYQVDPssgevssyepqPINIPA 149
Cdd:TIGR02488  83 SLQNTGNDLDLAIEGEGFFQV----LMPDgTTAYTRDGAFKINAEGQLVTSN-----GYPLQP-----------EITIPE 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  150 EfgkpkqTANIEVGVNlpangdlkdptqfdfsdpdtynrstsstiydsmgqsyklttyylkdqtqpntwntyytvtdkeg 229
Cdd:TIGR02488 143 N------ATSITVGSD---------------------------------------------------------------- 152

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  230 ekplnvaagdaqtptGHVghtmkfnndgtlaslnngqpitSVALGDpatnttpvdmngadpaqtlnfglgsatqfaapfe 309
Cdd:TIGR02488 153 ---------------GEV----------------------SVRQGG---------------------------------- 161

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  310 ltkfdedgattgfltkvdfdengsvmgtysNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGT 389
Cdd:TIGR02488 162 ------------------------------QTEPQEVGQITLATFINPAGLEAVGENLFRETPASGPPQIGTPGLDGFGK 211

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 491535503  390 INNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 437
Cdd:TIGR02488 212 LRQGFLEASNVNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQLL 259
flgE PRK05841
flagellar hook protein FlgE; Validated
 5-423 1.66e-24

flagellar hook protein FlgE; Validated


Pssm-ID: 235620 [Multi-domain]  Cd Length: 603  Bit Score: 106.08  E-value: 1.66e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   5 SLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSL-FTNAKTTPGG----GAQASQVAQQFHEGSSIYTNNPM 79
Cdd:PRK05841   8 AYSGIKTHQFGLDSLSNNIANVNTLGYRSNIPEFKTLFSSHLdALNAKSVVANdrnyGVTGSSNAISNKDGEYKPSDGEF 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  80 DLRVSGTGFFAVAKER-----------LTPQQNELTRNGAFHLNKENYMVTANDEFLLGYQVDPSSGEVSSYEPQ----- 143
Cdd:PRK05841  88 HMAYQGKGWFVVGPNKngsmtinkdgfSKKQDNYFTRDGSFARDADGYLVNPEGYYVYGIDLGKIKDGTLNSTARdeadi 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 144 ---------PINIPAE-FGKPKQTANIEVGVNLPAN-------------------------------------------- 169
Cdd:PRK05841 168 eklhgntlsPLQIPQDlTYQPVLTTKVGISVNLNPKdhlkgvqdfflndkgefikerflnqdinalanddnepidaitnr 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 170 ---------------------------------GDLKD----------------------PTQFDFSDPDTYN------- 187
Cdd:PRK05841 248 klnitiqkedgkkedfvftygdaekgenqfktlGDLKKllkektgldlnlirsekgakspPLLLEIANPSQTPitfslsg 327

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 188 ------------------------------RSTSSTIYDSMGQSYKL-TTYYLKDQTQPN-------TWNTYYTVTDKEG 229
Cdd:PRK05841 328 giadklglnangmelkkgisrdsvaikipsYSTEVEIYDKAGDKYLLqSEYYMTNSGDPTssprknqTWEVKSYIVDPKN 407

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 230 EKPLNvaagdaqtpTGHVGHTMKFNNDGTLASlnngQPITsVALGDpatNTTPVDMNGADPAQTLNFGLGSATqfaapfe 309
Cdd:PRK05841 408 KTPIN---------TDPTWEIVGFDATHKMKA----APMT-LDFKG---NKLTYSLDKSEDHDSSNLSYQDSK------- 463

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 310 LTKFDEDGATTGFLTKVDFDENGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQ---------FSGDKI-- 378
Cdd:PRK05841 464 LLEASQDGKPRGILRDVRIDENGVISLAFSNGVVEPMGRIGIAAFTNDQGLRKVGGNLFEMQEgtingenrpLSGNPIlg 543

                        570       580       590       600
                 ....*....|....*....|....*....|....*....|....*
gi 491535503 379 WGESNKGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSL 423
Cdd:PRK05841 544 WDEEGKLKFGKVRHKYLETSNVDAGNALTNLILMQRGYSMNARAF 588
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 3-165 1.91e-23

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 98.78  E-value: 1.91e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADV-YSNSLFTNAKTT-----PGG-----GAQASQVAQQFHEGS 71
Cdd:PRK12693   6 WIAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLlYQTIRQPGAQSSqnttlPSGlqvgtGVRPVATQKIFTQGN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  72 SIYTNNPMDLRVSGTGFFAVakerLTPQQNEL-TRNGAFHLNKENYMVTANdefllGYQVDPSsgevssyepqpINIPAE 150
Cdd:PRK12693  86 LQQTGNSLDVAIEGQGFFQV----QLPDGTIAyTRDGSFKLDQDGQLVTSG-----GYPLQPE-----------ITIPEN 145

                        170
                 ....*....|....*
gi 491535503 151 fgkpkqTANIEVGVN 165
Cdd:PRK12693 146 ------ATSITIGTD 154
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 187-317 3.08e-17

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 76.67  E-value: 3.08e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  187 NRSTSSTIYDSMGQSYKLTTYYLKDQTQPNTWNTYYTVTDKEGekPLNVAAGDAQTPTGHVGHTMKFNNdgtlaslnngq 266
Cdd:pfam07559   1 NYSTSVTVYDSLGNSHTLTVYFVKTATGPNTWEVYVTVDGEVG--DGDGTAGTASTAGGLMTGTLTFDS----------- 67

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 491535503  267 pitsvalgdpatnttpvdmngadpaQTLNFGLGSATQFAAPFELTKFDEDG 317
Cdd:pfam07559  68 -------------------------ITLDFGLTGSTQYASAFSVTSLSQDG 93
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 3-421 4.34e-17

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 80.57  E-value: 4.34e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYS-----------NSLFTNAKTTpGGGAQASQVAQQFHEGS 71
Cdd:PRK12636   6 YSGISGMKNFQTKLDVIGNNIANVNTYGFKKSRVTFKDMVSqtisgasgptaNRGGVNSKQV-GLGSQLGAIDTIHTQGS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  72 SIYTNNPMDLRVSGTGFFAVAkerltpQQNEL--TRNGAFHLNKENYMVTANDEFLLGyqvdpssgevssYEPQPINIPA 149
Cdd:PRK12636  85 LQTTGRPLDLAISGDGFFRVG------DGDNTayTRAGNFYLDNEGNIVNADGLYLLG------------MNGGRIQIPT 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 150 efgkpkqtanievgvnlpangdlkdptqfdfsdpdtynrstsstiydsmgqsyklttyylkdqtqpntwntyytvtdkeg 229
Cdd:PRK12636     --------------------------------------------------------------------------------

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 230 ekplnvaagDAQTptghvghtmkfnndgtlaslnngqpitsvalgdpatnttpvdmngadpaqtlnFGLGSatqfaapfe 309
Cdd:PRK12636 147 ---------DAQS-----------------------------------------------------FSIGA--------- 155

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 310 ltkfdedgattgfltkvdfdeNGSVMGTYSNGENVTLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGT 389
Cdd:PRK12636 156 ---------------------DGTVSYVDAGGELQTAGQIGLATFANPDGLEKAGDNLYRETLNSGTPSAVVPGEGGTGK 214

                        410       420       430
                 ....*....|....*....|....*....|..
gi 491535503 390 INNGMLEQSNIDMTQELVDLISAQRNFQANSR 421
Cdd:PRK12636 215 IVSGALEMSNVDLAEEFTEMIVAQRGFQANTR 246
flgE PRK08425
flagellar hook protein FlgE; Validated
 7-295 2.20e-15

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 78.59  E-value: 2.20e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   7 SGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYS--NSLFTNAKTTPGG--------GAQASQVAQQFHEGSSIYTN 76
Cdd:PRK08425  10 SGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSqtKLIATAPKGGLGGqndmqiglGVGVSSTTKIFSQGSIQNTD 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  77 NPMDLRVSGTGFFAVAKERLTpqQNELTRNGAFHLNKENYMVTANDEFLLGYQVDPSSGEV-SSYEPQPINIPAEFGKP- 154
Cdd:PRK08425  90 KNTDLAIQGDGFFIVSPDGGT--TRNYTRDGDFKFDAQGNFVNNGGYVVQGWVSDTDTGTIdSTGPIQNIRIDPGMVMPa 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 155 KQTANIEVGVNLPAnGDLKDptqfdfsdpdtynrSTSSTIY--DSMGQSYKLTTyYLKDQTQPNTwNTYYTVTDKEGEKP 232
Cdd:PRK08425 168 RASTEVSIKANLNS-GRHIG--------------TQSAPIYalDSVHGWNDKTG-DTAKTNDDGI-NPFYDSSKNLAQVA 230

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491535503 233 LNVAAgdaqtptghvghtmKFNNDGTLASLNNGQPI-TSVAlgdPATNTTPVDMNGADPAQTLN 295
Cdd:PRK08425 231 EDMGV--------------LFNADGDALNLREGQGIwVSYA---DAKMTKDIVPSAENLDITLN 277
flgE_epsilon TIGR02489
flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar ...
 6-168 2.99e-15

flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the Proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.


Pssm-ID: 131542 [Multi-domain]  Cd Length: 719  Bit Score: 78.07  E-value: 2.99e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503    6 LSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQ----------ASQVAQQFHEGSSIYT 75
Cdd:TIGR02489   9 VSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQTVKIATSPYDGLGGQndlsiglgvsISSTTKIFSQGSVQTT 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   76 NNPMDLRVSGTGFFAVAKERLTpqQNELTRNGAFHLNKENYMVTANDEFLLGYQVDPSSGEVSSYEPQPINIpAEFGKPK 155
Cdd:TIGR02489  89 NSKTDVAINGDGFFIVSDDGGL--TNYYTRDGAFKFDAYGNFVNNSGYIVQGWNRPLEAAESGTMSDWDDQT-VDSTRPP 165

                         170
                  ....*....|...
gi 491535503  156 QTANIEVGVNLPA 168
Cdd:TIGR02489 166 QNIFIDPGMVIPA 178
flgF PRK12690
flagellar hook-basal body complex protein;
2-149 2.21e-14

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 72.41  E-value: 2.21e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   2 SYVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADvYSNSLFTNAKTTPGGGAQASQVaqQFHEGSSIYTNNPMDL 81
Cdd:PRK12690   5 GYTTLTRQSGLMREMQVVANNIANASTTGFRREGLVFSE-YVKSLDSGEASLSMARASGRQT--DLEQGGLTQTGGQFDF 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491535503  82 RVSGTGFFAVAkerlTPQQNELTRNGAFHLNKENYMVTANdefllGYQVDPSSGevssyepQPINIPA 149
Cdd:PRK12690  82 AIEGEGFFMVE----TPQGERLTRAGSFTPNAEGELVDPD-----GNRLLDAGG-------APIFIPP 133
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 4-133 2.55e-14

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 72.57  E-value: 2.55e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   4 VSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNS-------LFTNAKTTPGG-----GAQASQVAQQFHEGS 71
Cdd:PRK12692   6 IAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLYQAerqqgvpNQAGQEAVPEGamlglGVRAAAIRNLHRQGS 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 491535503  72 SIYTNNPMDLRVSGTGFFAVakerLTPQ-QNELTRNGAFHLNKENYMVTANdefllGYQVDPS 133
Cdd:PRK12692  86 LAQTGNQLDLAVNGRGYFQV----TSPNgEIQYTRAGSFNKNAAGQLVTME-----GYAVDPA 139
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 3-132 5.66e-14

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 71.76  E-value: 5.66e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFAD-VYSNSLF-----TNAKTTP-----GGGAQASQVAQQFHEGS 71
Cdd:PRK12816   6 WTAASGMNAQQFNIDTIANNLANVNTTGFKKIRAEFEDlIYQTQRRagtpaTEDTVTPlgvqvGHGVKVAATQRLFEQGS 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491535503  72 SIYTNNPMDLRVSGTGFFAVakerLTPQQN-ELTRNGAFHLNKENYMVTANdefllGYQVDP 132
Cdd:PRK12816  86 LQATGNKLDVAIEGEGFFKI----LMPDGTyAYTRDGSFKIDANGQLVTSN-----GYRLLP 138
flgF PRK12689
flagellar basal-body rod protein FlgF;
1-147 2.47e-13

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 69.39  E-value: 2.47e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   1 MSYVSLSGLSAA-----QLDLntTSNNIANANTYGFKESRAEFADvYSNSLfTNAKTTPGGGAQASQVAQQ-----FHEG 70
Cdd:PRK12689   1 MQNALLVGLSRQmalerQLDV--VANNVANVNTNGFKARSSLFQE-YLMPG-AHEDNFQRPDRRVSYVQDRgtpldLSQG 76

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491535503  71 SSIYTNNPMDLRVSGTGFFAVAkerlTPQQNELTRNGAFHLNKENYMVTANdefllGYQVDPSSGEVsSYEPQPINI 147
Cdd:PRK12689  77 PLEQTKNPLDVAIDGDAFLAVQ----TPQGERYTRDGALEINAQGQLVTSD-----GYPVLGTGGPI-TFQPTDTGI 143
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 358-436 1.04e-12

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 63.05  E-value: 1.04e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491535503  358 QGLDKKGGTQWDSTQfsGDKIWGEsnkGSFGTINNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 436
Cdd:pfam06429   1 AGLEKGGDNLFRETD--GAPILGA---GADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 324-433 1.89e-12

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 67.18  E-value: 1.89e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503 324 TKVDFDENGSVMGTYSNGENV-TLGRVALVRVPNEQGLDKKGGTQWDSTQFSGDKIWGESNKGSFGTINNGMLEQSNIDM 402
Cdd:PRK12692 147 TQVTINESGQVFAKIDGQVAPqNLGQLTLANFANESGLEPLGNGLYRETPASGAPVVGNPGDVGFGKIQQGYLEGSNVDP 226

                         90       100       110
                 ....*....|....*....|....*....|.
gi 491535503 403 TQELVDLISAQRNFQANSRSLEVHNQLQQNI 433
Cdd:PRK12692 227 VKEITSLITAQRAFEMNSKVIQAADEMAGTV 257
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 3-127 1.99e-12

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 67.03  E-value: 1.99e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKE---SRAEFADV----YSNSLF-TNAKTTPGG---GAQASQVAQQFHEGS 71
Cdd:PRK12818   6 YTAVSGMITLEAKQDVITNNLANVNTVGYKSdnlAFKSFEDVlienYDKKVGnKNVKNIIGGlsmGSKIDEVNTLFTQGI 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 491535503  72 SIYTNNPMDLRVSGTGFFAVAKErltPQQNELTRNGAFHLNKENYMVTANDEFLLG 127
Cdd:PRK12818  86 IKSTDKPTDFAIQGRGFFTVERN---AGNNYYTRDGHFHVDTQGYLVNDSGYYVLG 138
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 3-127 3.88e-12

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 66.03  E-value: 3.88e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   3 YVSLSGLSAAQLDLNTTSNNIANANTYGFkesRAEFAD-----VYSNSLFTNAKttpgggAQASQVAQQFHEGSSIYTNN 77
Cdd:PRK12640   6 YTAMSGASQNLNQQAVVANNLANASTPGF---RADLAQaravpVFGEGLPTRVF------ALASTPGADFSPGPLQTTGR 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 491535503  78 PMDLRVSGTGFFAVakerLTPQQNE-LTRNGAFHLNKENYMVTANDEFLLG 127
Cdd:PRK12640  77 PLDVALQGDGWLAV----QAPDGSEaYTRNGSLQVDANGQLRTANGLPVLG 123
flgF PRK12642
flagellar basal-body rod protein FlgF;
3-138 9.43e-12

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 64.68  E-value: 9.43e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLFTNAKTTPGGGAQASQVAqqfheGSSIYTNNPMDLR 82
Cdd:PRK12642   6 YVALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTVVSDTASKKVAFVSQGKSYLSTEA-----GPLTKTGNPLDFA 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491535503  83 VSGTGFFAVAkerlTPQQNELTRNGAFHLNKENYMVTANdefllGY----------QVDPSSGEVS 138
Cdd:PRK12642  81 VKGDAWFSFD----TPAGQVYTRDGRFTMTSTGELVSVT-----GYpvldaggapiQLNPGGGEPT 137
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 325-417 1.62e-10

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 57.25  E-value: 1.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  325 KVDFDENGSVmgtYSNGENVtlGRVALVRVPNEQGLDKKGGTQWDSTQFsgdkiwGESNKGSFGTINNGMLEQSNIDMTQ 404
Cdd:TIGR02490   8 DITIGADGTI---SQDGEEV--GRLGLVNFDNPNQLQREGDGLFRATGG------GPAPADSNVRVVQGYLEGSNVNAVS 76

                          90
                  ....*....|...
gi 491535503  405 ELVDLISAQRNFQ 417
Cdd:TIGR02490  77 EMVDMIEAQRAYE 89
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 3-121 2.49e-09

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 57.78  E-value: 2.49e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADVYSNSLftNAKTTP---------GGGAQASQVAQQFHEGSSI 73
Cdd:PRK12817   6 WNSKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFSDLVYETL--DRKGYPtndkpeiitGTGVKATNWIRDNQQGNLL 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 491535503  74 YTNNPMDLRVSGTGFFAVAKERLTpqqNELTRNGAFHLNKENYMVTAN 121
Cdd:PRK12817  84 TTGNKTDLAIDGEGFFRVIMADGT---YAYTRAGNFNIDSNGMLVDDN 128
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
392-436 1.47e-07

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 50.11  E-value: 1.47e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 491535503 392 NGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 436
Cdd:COG1558   89 DGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEI 133
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 390-437 2.64e-06

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 48.53  E-value: 2.64e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 491535503 390 INNGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 437
Cdd:PRK12817 212 ILQGYLENSNVDLGKEMTDMIITQRAFQLSSKGIKTADEMWGIINNMR 259
Flg_bb_rod pfam00460
Flagella basal body rod protein;
3-31 2.96e-06

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 43.71  E-value: 2.96e-06
                          10        20
                  ....*....|....*....|....*....
gi 491535503    3 YVSLSGLSAAQLDLNTTSNNIANANTYGF 31
Cdd:pfam00460   2 YTAVSALNAQQIRLDVIANNIANANTPGY 30
flgG PRK12819
flagellar basal-body rod protein FlgG;
3-127 2.99e-06

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 48.34  E-value: 2.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKesraefADVYSNSLFTNAKTTPGGGAQASQVAQ------------QFHEG 70
Cdd:PRK12819   5 YIGSMGMMNYMQRINVHSNNVANAQTTGFK------AENMTSKVFDVQDTYRRGDGAVTNIGSvdyavvpaathvNLVQG 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491535503  71 SSIYTNNPMDLRVS-----GTGFFAVAKERLTpqqnELTRNGAFHLNKENYMVTANDEFLLG 127
Cdd:PRK12819  79 NIQMTNSDTDFFLDdgpagTSSFFVTSKNGET----FLTRDGSFTLNSDRYLQTASGAFVMG 136
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
3-69 7.85e-06

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 47.95  E-value: 7.85e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491535503   3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFAdvySNSLFTNAKTTPGGGAQASQVAQQFHE 69
Cdd:COG1256    7 NIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLS---AAGPTATGAGQVGTGVRVTGIRRIRDE 70
flgF PRK12641
flagellar basal-body rod protein FlgF;
20-125 9.45e-06

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 46.86  E-value: 9.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503  20 SNNIANANTYGFKESRAEFAdvysnsLFTNAKTTPGGGAQASQVAQQFHEGSSIYTNNPMDLRVSGTGFFAVakeRLTPQ 99
Cdd:PRK12641  23 ANNLANISTTGFKEKFILAI------QNHNVKNLYNSDKKITKEYYNLSPGTLRYTGRNLDLFIKDNGWLTI---KDTNG 93

                         90       100
                 ....*....|....*....|....*.
gi 491535503 100 QNELTRNGAFHLNKENYMVTANDEFL 125
Cdd:PRK12641  94 QEAYTKNGHLKINSKRKLTVQNNEVI 119
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 392-436 2.80e-05

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 43.66  E-value: 2.80e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 491535503 392 NGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 436
Cdd:PRK05681  88 KGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTI 132
flgG PRK12819
flagellar basal-body rod protein FlgG;
388-421 4.69e-05

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 44.87  E-value: 4.69e-05
                         10        20        30
                 ....*....|....*....|....*....|....
gi 491535503 388 GTINNGMLEQSNIDMTQELVDLISAQRNFQANSR 421
Cdd:PRK12819 206 GIVKNGMLENSNVDMTKEMADLMTDQRMIQASQR 239
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
4-65 1.09e-04

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 42.02  E-value: 1.09e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491535503   4 VSLSGLSAAQLDLNTTSNNIANANTYG------FKESRAEFADVYSNSlftnakTTPGGGAQASQVAQ 65
Cdd:COG1558    9 IAGSGLTAQRLRLNVIASNLANANSTRtsdggpYRRKQVVFEAVLDRA------GSGAAGVRVAGIVE 70
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 4-28 1.53e-04

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 41.35  E-value: 1.53e-04
                         10        20
                 ....*....|....*....|....*
gi 491535503   4 VSLSGLSAAQLDLNTTSNNIANANT 28
Cdd:PRK05681   9 IAGSGLSAQSQRLNVISSNIANADS 33
flgK PRK08147
flagellar hook-associated protein FlgK; Validated
 6-69 2.75e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236165 [Multi-domain]  Cd Length: 547  Bit Score: 43.13  E-value: 2.75e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491535503   6 LSGLSAAQLDLNTTSNNIANANTYGFKESRAEFADvysnslfTNAKTTPGG----GAQASQVAQQFHE 69
Cdd:PRK08147   9 MSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQ-------AGSTLTAGGwignGVYVSGVQREYDA 69
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 392-436 2.77e-04

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 40.80  E-value: 2.77e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 491535503  392 NGMLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 436
Cdd:TIGR01395  89 EGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEI 133
flgB PRK06003
flagellar basal body rod protein FlgB; Reviewed
 1-55 3.31e-04

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 168340  Cd Length: 126  Bit Score: 40.38  E-value: 3.31e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491535503   1 MSYVSLSGLSAAQ-----LDLNTTSNNIANANTYGFKESRAE-FADVYSNSLFTNAKTTPG 55
Cdd:PRK06003   1 MSPIYLFDLASRQaqwlsVRQATVAGNIANANTPGYRARDVQpFADVLDKTGLTMAATSPG 61
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 3-39 3.34e-04

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 42.33  E-value: 3.34e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 491535503    3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFA 39
Cdd:TIGR02492   4 NIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVLT 40
flgK PRK07739
flagellar hook-associated protein FlgK; Validated
 5-39 5.28e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236084 [Multi-domain]  Cd Length: 507  Bit Score: 42.31  E-value: 5.28e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 491535503   5 SLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFA 39
Cdd:PRK07739  11 ARRGLFAQQAALYVTGHNIANANTPGYTRQRVNLA 45
flgK PRK05683
flagellar hook-associated protein FlgK; Validated
 4-31 8.63e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235558 [Multi-domain]  Cd Length: 676  Bit Score: 41.64  E-value: 8.63e-04
                         10        20
                 ....*....|....*....|....*...
gi 491535503   4 VSLSGLSAAQLDLNTTSNNIANANTYGF 31
Cdd:PRK05683   6 IGLSGLGASQTALAVTGNNIANVDTAGY 33
flgC PRK06802
flagellar basal body rod protein FlgC; Reviewed
 4-79 1.06e-03

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 180702  Cd Length: 141  Bit Score: 39.40  E-value: 1.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491535503   4 VSLSGLSAAQLDLNTTSNNIANANTYG------FKESRAEFADVYSNSLFTNAKTTPGGGAQASQVAQQFHEGSSIYTNN 77
Cdd:PRK06802   9 IAGSAMTAQTIRLNTVASNLANAESPAasaataYKARSPVFAAVYSARTLADPRGVQGAQVQVLDVVQVGGSVKRYEPNN 88


                 ..
gi 491535503  78 PM 79
Cdd:PRK06802  89 PL 90
flgK PRK07191
flagellar hook-associated protein FlgK; Validated
 1-63 1.09e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180871 [Multi-domain]  Cd Length: 456  Bit Score: 41.35  E-value: 1.09e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 491535503   1 MSYVSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFAdvySNSLFTNAKTTPGGGAQASQV 63
Cdd:PRK07191   3 FIRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQS---AIGADGQGGVNAGNGVNVDGI 62
flgK PRK06945
flagellar hook-associated protein FlgK; Validated
 4-39 2.08e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235895 [Multi-domain]  Cd Length: 651  Bit Score: 40.38  E-value: 2.08e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 491535503   4 VSLSGLSAAQLDLNTTSNNIANANTYGFKESRAEFA 39
Cdd:PRK06945   7 IGLSGLNAAQWGLTTTGHNISNAATPGYSRQRVVQA 42
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 4-28 2.32e-03

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 38.11  E-value: 2.32e-03
                          10        20
                  ....*....|....*....|....*
gi 491535503    4 VSLSGLSAAQLDLNTTSNNIANANT 28
Cdd:TIGR01395   6 VSASALSAQRVRMNVVSSNLANADS 30
flgK PRK08471
flagellar hook-associated protein FlgK; Validated
 3-36 5.22e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236270 [Multi-domain]  Cd Length: 613  Bit Score: 39.26  E-value: 5.22e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 491535503   3 YVSLSGLSAAQLDLNTTSNNIANANTYGFKESRA 36
Cdd:PRK08471   9 NTGYTGLQAAQVMVDTTGNNISNASSEFYTRQRV 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH