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Conserved domains on  [gi|491647135|ref|WP_005504661|]
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carbohydrate ABC transporter permease [Grimontia hollisae]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-276 1.97e-95

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 281.98  E-value: 1.97e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   2 SKKWYLQVGFYLLVAVIVVFSVFPFYYAIVTSFKSGSALFQ--VVYLPSSLDWGNYASVFSGGVFERNLLNSVLVSTVVV 79
Cdd:COG0395    8 RRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSgpPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVST 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  80 AISLLLGVTASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLYNSMPGLALAYMIFTLPFTVWVLTTFM 159
Cdd:COG0395   88 VLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 160 KQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALTFTLTNEQRTVPVAIALISgaGQYELP 239
Cdd:COG0395  168 RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQ--GQYGTD 245

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 491647135 240 WGTIMAASVIVTVPLIVLVLVFQRRIVSGLTAGAVKG 276
Cdd:COG0395  246 WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-276 1.97e-95

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 281.98  E-value: 1.97e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   2 SKKWYLQVGFYLLVAVIVVFSVFPFYYAIVTSFKSGSALFQ--VVYLPSSLDWGNYASVFSGGVFERNLLNSVLVSTVVV 79
Cdd:COG0395    8 RRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSgpPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVST 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  80 AISLLLGVTASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLYNSMPGLALAYMIFTLPFTVWVLTTFM 159
Cdd:COG0395   88 VLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 160 KQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALTFTLTNEQRTVPVAIALISgaGQYELP 239
Cdd:COG0395  168 RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQ--GQYGTD 245

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 491647135 240 WGTIMAASVIVTVPLIVLVLVFQRRIVSGLTAGAVKG 276
Cdd:COG0395  246 WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
malG PRK10998
maltose ABC transporter permease MalG;
68-276 4.99e-31

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 117.12  E-value: 4.99e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  68 LLNSVLVSTVVVAISLLLGVTASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLY------NSMPGLAL 141
Cdd:PRK10998  85 LWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYipfiglNTHGGVIF 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 142 AYMiFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALTFTLTNEQR 221
Cdd:PRK10998 165 AYL-GGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSY 243

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 491647135 222 TVPVaialisGAGQYELP----WGTIMAASVIVTVPLIVLVLVFQRRIVSGLTAGAVKG 276
Cdd:PRK10998 244 TLAV------GMQQYLNPqnylWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 43-259 6.97e-13

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 66.99  E-value: 6.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   43 VVYLPSSLDWGNYASVFSGGVFERNLLNSVLVSTVVVAISLLLGVTASYALGRIRFRGRNIVLLTI-LGVSMFPQVAVLS 121
Cdd:TIGR00969  37 LFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIdLPFALSPVVAGLT 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  122 -----------GLFELIRAFGLYNSMPGLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLW 190
Cdd:TIGR00969 117 lallygsngwlGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIR 196

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491647135  191 PALVTTGLLAFIAAWNEF--LFALTFTLTNEQRTVPVAIALISGAGQYElpwGTIMAASVIVTVPLIVLVL 259
Cdd:TIGR00969 197 WALLYGVVLTFARALGEFgaVVVVSGNIPGKTLTLPLLIEERLEQYDYP---GAYVIAAVLLLVSLVTLFL 264
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 68-250 2.00e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.22  E-value: 2.00e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  68 LLNSVLVSTVVVAISLLLGVTASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLYNSMPGLALAYMI-- 145
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIla 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 146 --FTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALTFTLTNEQRTV 223
Cdd:cd06261   81 llLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*..
gi 491647135 224 PVAIALISGAGQYELPWGTIMAASVIV 250
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLL 187
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 95-269 2.41e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.38  E-value: 2.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   95 RIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLYNSMPGLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDG 174
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  175 ATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALTFTltneqRTVPVAIALISGAGQYELPWGT-IMAASVIVTVP 253
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG-----SWPGLGLLLIEAILGYDYPEIQgPVLAAALILLL 165

                         170
                  ....*....|....*.
gi 491647135  254 LIVLVLVFQRRIVSGL 269
Cdd:pfam00528 166 LNLLVDILQRLLDPRV 181
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-276 1.97e-95

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 281.98  E-value: 1.97e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   2 SKKWYLQVGFYLLVAVIVVFSVFPFYYAIVTSFKSGSALFQ--VVYLPSSLDWGNYASVFSGGVFERNLLNSVLVSTVVV 79
Cdd:COG0395    8 RRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSgpPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVST 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  80 AISLLLGVTASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLYNSMPGLALAYMIFTLPFTVWVLTTFM 159
Cdd:COG0395   88 VLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 160 KQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALTFTLTNEQRTVPVAIALISgaGQYELP 239
Cdd:COG0395  168 RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQ--GQYGTD 245

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 491647135 240 WGTIMAASVIVTVPLIVLVLVFQRRIVSGLTAGAVKG 276
Cdd:COG0395  246 WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-276 6.94e-74

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 227.34  E-value: 6.94e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   1 MSKKWYLQVGF-YLLVAVIVVFSVFPFYYAIVTSFKSGSALFQVVYLPSSLDWGNYASVFSGGVFERNLLNSVLVSTVVV 79
Cdd:COG3833    7 RKRRRRLKLGLrHLVLIILAIIALFPILWVVSASFNPGGSLYSSSLIPENFTLENYKKLFTETPFLRWFLNSLIVAVVTA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  80 AISLLLGVTASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLYNSMPGLALAYMIFTLPFTVWVLTTFM 159
Cdd:COG3833   87 IISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNTWLMKGYF 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 160 KQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALTFTLTNEQRTVPVAI-ALISgaGQYEL 238
Cdd:COG3833  167 DTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLySFVS--DQRNT 244

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 491647135 239 PWGTIMAASVIVTVPLIVLVLVFQRRIVSGLTAGAVKG 276
Cdd:COG3833  245 NWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 3-263 1.06e-37

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 133.70  E-value: 1.06e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   3 KKWYLQVGFYLLVAVIVVFSVFPFYYAIVTSFKSGSALfqvVYLPSSLDWGNYASVFSGGVFERNLLNSVLVSTVVVAIS 82
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFL---TFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  83 LLLGVTASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLYNSMPGLALAYMIFTLPFTVWVLTTFMKQL 162
Cdd:COG1177   78 TVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGF 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 163 PLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALtFTLTNEQRTVPVAIALISGAGQYElpwgT 242
Cdd:COG1177  158 DPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITL-FLAGPGVTTLPVYIYSMIRRGISP----E 232

                        250       260
                 ....*....|....*....|.
gi 491647135 243 IMAASVIVTVPLIVLVLVFQR 263
Cdd:COG1177  233 INALSTLLILLSLLLLLLAER 253
malG PRK10998
maltose ABC transporter permease MalG;
68-276 4.99e-31

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 117.12  E-value: 4.99e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  68 LLNSVLVSTVVVAISLLLGVTASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLY------NSMPGLAL 141
Cdd:PRK10998  85 LWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYipfiglNTHGGVIF 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 142 AYMiFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALTFTLTNEQR 221
Cdd:PRK10998 165 AYL-GGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSY 243

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 491647135 222 TVPVaialisGAGQYELP----WGTIMAASVIVTVPLIVLVLVFQRRIVSGLTAGAVKG 276
Cdd:PRK10998 244 TLAV------GMQQYLNPqnylWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-265 5.17e-21

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 92.15  E-value: 5.17e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   9 VGFYLLVAVIVVFSVFPFYYAIVTSFksgsalfqVVYLPSSLDWGNYASVFSGGVFERNLLNSVLVSTVVVAISLLLGVT 88
Cdd:COG1178  289 LALALCLLLVLLGLLLPLLALLLWSL--------TKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALL 360

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  89 ASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRA---FGLYNSMPGLALAYMIFTLPFTVWVLTTFMKQLPLE 165
Cdd:COG1178  361 LAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRplpLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPS 440

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 166 LEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEflFALTFTL-TNEQRTVPVAIALISGAGQYelpwGTIM 244
Cdd:COG1178  441 LEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKE--LSATLLLrPPGFETLAVLIYQLASSGRY----GEAA 514

                        250       260
                 ....*....|....*....|.
gi 491647135 245 AASVIVTVPLIVLVLVFQRRI 265
Cdd:COG1178  515 ALALLLVLVSLLPVLLLERLL 535
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
13-269 6.07e-21

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 89.41  E-value: 6.07e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  13 LLVAVIVVfsVFPFYYAIVTSFKSGSALFQV--VYLPSSLDWGNYASVFSGGV------FERNLLNSVLVSTVVVAISLL 84
Cdd:PRK10973  16 LILGIAVI--LFPLYVAFVAATLDKQAVFAVpmTLIPGTHLLENIANIWVNGVgnnsapFGRMLLNSFVMAFSITVGKIT 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  85 LGVTASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLYNSMPGLALAYMIFTLpfTVWVLTTFMKQLPL 164
Cdd:PRK10973  94 VSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASAT--ATFLFRQFFMTLPD 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 165 ELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALTFTLTNEQRTVPVAIALISGAGQYELPWGTIM 244
Cdd:PRK10973 172 ELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVAGIKGMIATGEGTTEWNQVM 251

                        250       260
                 ....*....|....*....|....*
gi 491647135 245 AASVIVTVPLIVLVLVFQRRIVSGL 269
Cdd:PRK10973 252 AAMLLTLIPPVVIVLAMQRAFVRGL 276
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-265 6.15e-19

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 84.04  E-value: 6.15e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   1 MSKKWYLQVGFYLLVA----VIVVFSVFPFYYAIVTSFKSGSALFQVVYlpsSLDWGNYASVFSGGVFERNLLNSVLVST 76
Cdd:COG1176    1 MSAALRRRLRPLLLLLpallWLLLFFVLPLLLLLVYSFTTRDPYGGVVP---GFTLENYARLFTDPLYLKVLLRTLWIAL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  77 VVVAISLLLGVTASYALGRIRFRGRNIVLLTILGVSMFPQV-----------------AVLSGLFELIRAFGLYNSMPGL 139
Cdd:COG1176   78 LTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLvrtyawivllgrngllnSLLLALGLIDEPLRLLYTEFAV 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 140 ALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALtftLTNE 219
Cdd:COG1176  158 VIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPA---LLGG 234

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 491647135 220 QRTVPVAIALISGAGQYeLPWGTIMAASVIVTVPLIVLVLVFQRRI 265
Cdd:COG1176  235 GKVLMIGNLIYQQFLSA-LNWPLAAALAVVLLLIVLLVLLLYLRLL 279
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-276 2.09e-17

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 81.75  E-value: 2.09e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   9 VGFYLLVAVIVVFSVFPFYYAIVTSFksgsalfqvvylpsSLDWGNYASVFSGGVFERNLLNSVLVSTVVVAISLLLGVT 88
Cdd:COG1178   11 LLLLLLALLLALLVLLPLLALLLRAF--------------TDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVP 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  89 ASYALGRIRFRGRNiVLLTILGVSMF--PQVAVL--------SGLFE--LIRAFGLYN----SMPGLALAYMIFTLPFTV 152
Cdd:COG1178   77 LAWLLARTDFPGRR-LLRWLLLLPLAlpPYVVALawialfgpNGLLNtlLRALFGLEPpdiyGLGGIILVLVLFNYPYVY 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 153 WVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEflFALTFTLTNEQRTVPVAIaLISG 232
Cdd:COG1178  156 LLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLAD--FGTPLVLGGGYTTLTTAI-YQAW 232

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 491647135 233 AGQYELPWGTIMAASVIVtvpLIVLVLVFQRRIVSGLTAGAVKG 276
Cdd:COG1178  233 LGDFDLGAAAALALVLLL---LVLLLLLLERRLRRRRRYATVGG 273
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
15-263 9.68e-17

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 78.25  E-value: 9.68e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  15 VAVIVVFSVFPFYYAIVTSFKSGSALFQVvylPSSLDWGNYASVFSGGVFERNLLNSVLVSTVVVAISLLLGVTASYALG 94
Cdd:COG1175   28 LLLLLVFVLYPLLYTLYLSFTDWNLLGPP---PEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLN 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  95 RiRFRGRNIVLLTILGVSMFPQVAV----------LSGLF-ELIRAFGL---------YNSMPGLALAYMIFTLPFTVWV 154
Cdd:COG1175  105 R-KLRGRGFFRTLFFLPWVISPVVValiwkwlfnpDYGLLnALLGALGLepinwlgdpSLALPAVIIVTVWKGTGFNMLI 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 155 LTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNefLFALTFTLTN----EQRTVPVAIALI 230
Cdd:COG1175  184 FLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQ--VFDLVYVLTGggpgNSTTTLVLYIYQ 261

                        250       260       270
                 ....*....|....*....|....*....|...
gi 491647135 231 SGAGQYELPWGTimAASVIVTVPLIVLVLVFQR 263
Cdd:COG1175  262 TAFQQFDFGYAS--AIAVVLFLIILVLTLLQLR 292
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 40-264 1.26e-15

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 74.79  E-value: 1.26e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  40 LFQVVYLPSSLDWGNYASVFSGGVFERNLLNSVLVSTVVVAISLLLGVTASYALGRIRFRGRNIVLLTI-LGVSMFPQVA 118
Cdd:COG0555   28 LAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVdLPFALPTAVA 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 119 --VLSGLF-------ELIRAFGL--YNSMPGLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMP 187
Cdd:COG0555  108 giALLLLFgpngwlgQLLAPLGIkvAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILP 187

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491647135 188 LLWPALVTTGLLAFIAAWNEFLFALTFTLTNEQRTVPVAIALISGAGQYELPwGTIMAASVIVTVPLIVLVLV--FQRR 264
Cdd:COG0555  188 LLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYA-GATAIALVLLLISFLLLLLInlLQRR 265
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 43-259 6.97e-13

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 66.99  E-value: 6.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   43 VVYLPSSLDWGNYASVFSGGVFERNLLNSVLVSTVVVAISLLLGVTASYALGRIRFRGRNIVLLTI-LGVSMFPQVAVLS 121
Cdd:TIGR00969  37 LFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIdLPFALSPVVAGLT 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  122 -----------GLFELIRAFGLYNSMPGLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLW 190
Cdd:TIGR00969 117 lallygsngwlGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIR 196

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491647135  191 PALVTTGLLAFIAAWNEF--LFALTFTLTNEQRTVPVAIALISGAGQYElpwGTIMAASVIVTVPLIVLVL 259
Cdd:TIGR00969 197 WALLYGVVLTFARALGEFgaVVVVSGNIPGKTLTLPLLIEERLEQYDYP---GAYVIAAVLLLVSLVTLFL 264
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 68-250 2.00e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.22  E-value: 2.00e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  68 LLNSVLVSTVVVAISLLLGVTASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLYNSMPGLALAYMI-- 145
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIla 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 146 --FTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALTFTLTNEQRTV 223
Cdd:cd06261   81 llLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*..
gi 491647135 224 PVAIALISGAGQYELPWGTIMAASVIV 250
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLL 187
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 14-232 4.15e-11

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 62.13  E-value: 4.15e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  14 LVAVIVVFSVFPFYYAIVTSFKSGSALFQvvylpssldWGNYASVFSGgVFERNLLNSVLVSTVVVAISLLLGVTASYAL 93
Cdd:COG4132   21 FFLFVLLFLLLPTVWVVIGAFQDDDGGFT---------LANYAELTSP-FYLQAFWNSIWLSLASALIGAVIGLLLAYAL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  94 GRIRFRGRNIVLLTILGVS--------MFPQVAVL--SGL---------FELIRAFGLYnSMPGLALAYMIFTLPFTVWV 154
Cdd:COG4132   91 RRGGPGWLRRAVLAFSGVAsnfagvplAFAFIATLgrNGLvtlllkqlgIDLYDGFNLY-SFWGLILVYLYFQIPLMVLL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 155 LTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAF---IAAwneflFALTFTLTNEQ-RTVPVAI-AL 229
Cdd:COG4132  170 LYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFanaFGA-----YATAYALTGGNyNLVPIRIgAL 244


                 ...
gi 491647135 230 ISG 232
Cdd:COG4132  245 ISG 247
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 13-201 1.28e-10

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 60.38  E-value: 1.28e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  13 LLVAVIVVFSVFPFYYAIVTSFKSgsALFQVVYLPSSLDWgnYASVFSGGVFERNLLNSVLVSTVVVAISLLLGVTASYA 92
Cdd:PRK09500   8 GFMTLVYAYLYIPIIILIVNSFNS--SRFGINWKGFTTKW--YELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  93 LGRIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLYNSMPGLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIV 172
Cdd:PRK09500  84 LYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKD 163

                        170       180
                 ....*....|....*....|....*....
gi 491647135 173 DGATPWQIITKVLMPLLWPALVTTGLLAF 201
Cdd:PRK09500 164 LGASEFTILRKIILPLALPAVAAGWLLSF 192
cysT CHL00187
sulfate transport protein; Provisional
 71-208 4.50e-10

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 58.49  E-value: 4.50e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  71 SVLVSTVVVAISLLLGVTASYALGRIRFRGRNIVLLTI-LGVSMFPQVA--VLSGLFELIRAFGLYNSMPGLALAY---- 143
Cdd:CHL00187  60 TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVdLPFALPTSVAglTLATVYGDNGWIGHLLSHLGIQIVFtklg 139

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 144 ----MIF-TLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEF 208
Cdd:CHL00187 140 vllaMIFvSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 13-273 9.37e-10

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 58.09  E-value: 9.37e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  13 LLVAVIVVFSVFPFYYAIVTSFKSGSalfqvvylPSSLDwgNYASVFSGGVFERNLLNSVLVSTVVVAISLLLGVTASYA 92
Cdd:PRK15050  30 LPLLVLAPLVVYPLVRVVLQSLTGEH--------GLGLA--TYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALV 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  93 LGRIRFRGRNIVLLTILGVSMFPQ-------------VAVLSGLfeLIRAFGL-------YNSMPGLALAYMIFTLPFTV 152
Cdd:PRK15050 100 LAFVPFPGASLVGRFIDTFVAFPSflitlaftflygsAGSVNIA--LQRLFGLeappldfLYSPGGVILAEITFYTPFVV 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 153 WVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALtFTLTNEQRTVPVAIaLISG 232
Cdd:PRK15050 178 RPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVL-FTGAKDVVTLPVLI-YSKA 255

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 491647135 233 AGQYELPwgtimAASVIVTVPLIVLVLVFQ--RRIVSGLTAGA 273
Cdd:PRK15050 256 IVDFDYP-----TACAIAVVNLALSLGLYAlyRRVNRRAGGGS 293
modB PRK09421
molybdate ABC transporter permease subunit;
68-227 9.98e-10

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 57.24  E-value: 9.98e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  68 LLNSVLVSTVVVAISLLLGVTASYALGRIRFRGRNI--------------VLLTILGVSMFPQVAV---LSGLFELIRAF 130
Cdd:PRK09421  11 VLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLldsllhlplvlppvVTGYLLLISMGRRGFIgqwLYEWFGISFAF 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 131 glynSMPGLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLF 210
Cdd:PRK09421  91 ----SWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGA 166

                        170
                 ....*....|....*....
gi 491647135 211 ALTF--TLTNEQRTVPVAI 227
Cdd:PRK09421 167 TITFvsNIPGETQTIPSAM 185
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 95-269 2.41e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.38  E-value: 2.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   95 RIRFRGRNIVLLTILGVSMFPQVAVLSGLFELIRAFGLYNSMPGLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDG 174
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  175 ATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFALTFTltneqRTVPVAIALISGAGQYELPWGT-IMAASVIVTVP 253
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG-----SWPGLGLLLIEAILGYDYPEIQgPVLAAALILLL 165

                         170
                  ....*....|....*.
gi 491647135  254 LIVLVLVFQRRIVSGL 269
Cdd:pfam00528 166 LNLLVDILQRLLDPRV 181
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 138-208 2.43e-07

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 50.79  E-value: 2.43e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491647135  138 GLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEF 208
Cdd:TIGR02139 134 GIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEY 204
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 5-208 3.90e-07

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 50.83  E-value: 3.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135    5 WYLQVGFYLLVAVIVVFSVFPFYYAIVTSFKSGSALFQVVylpssldwGNYASVFSGGVFERNLLNSVLVSTVVVAISLL 84
Cdd:TIGR03262   1 LIARLLLAGMILALLLFLLLPLLALLTKSVYDSDGDFIGL--------ANFAEYFATPGLLQSLGNSLTVSAIVTAIVVP 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   85 LGVTASYALGRIRFRGRN----IVLLTILGVSMFPQVAV--LSGLFELIRAFGLYNSM---PGLALAYMIFTLPFTVWVL 155
Cdd:TIGR03262  73 LAFAFAYALTRSRIPGKGafrlVALLPLLAPSLLPAISLiyLFGNQGLLKGLLGGFSIygfWGIVIGEVFYTFPHALMIL 152

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 491647135  156 TTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEF 208
Cdd:TIGR03262 153 VTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDF 205
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
48-208 2.06e-06

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 47.83  E-value: 2.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  48 SSLDWGNYASVFSGGVFERNLLNSVLVSTVVVAISLLLGVTASYALGRIRFRGRNIV-LLTILGVSMFPQVA--VLSGLF 124
Cdd:PRK10971  40 SQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLdALMDLPFALPTAVAglTLASLF 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 125 ELIRAFGLY---------NSMPGLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVT 195
Cdd:PRK10971 120 SVNGWYGEWlakfdikvtYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLA 199

                        170
                 ....*....|...
gi 491647135 196 TGLLAFIAAWNEF 208
Cdd:PRK10971 200 GVALSFTRSLGEF 212
PhnU TIGR03226
2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease ...
 55-227 2.91e-06

2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).


Pssm-ID: 274484  Cd Length: 288  Bit Score: 47.63  E-value: 2.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   55 YASVFSGGVFERNLLNSVLVSTVVVAISLLLGVTASYALGRIRFRGRNIVLLTILGVSMFPQVAVLSGLF---------- 124
Cdd:TIGR03226  57 FRQFFASHDFIDALGNTLQIAFAAAGGALVLGSLLAAILFFIPFPGAQLVGRFIDLFIAFPSFLIAFAFIfiygsaglln 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  125 -ELIRAFGL-------YNSMPGLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTT 196
Cdd:TIGR03226 137 gALMAAFAFdappldfLFGAGGVILAEITFFTPFVMRPLLAGFAQIDKRLLEAASILGAHGLMLARQVIFPAALPAIAAG 216

                         170       180       190
                  ....*....|....*....|....*....|.
gi 491647135  197 GLLAFIAAWNEFLFALtFTLTNEQRTVPVAI 227
Cdd:TIGR03226 217 GILCFLLTLNEFGILL-FIGAAGLITLPMAI 246
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 46-201 1.04e-05

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 46.40  E-value: 1.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  46 LPSSLDWGNYASvfSGGVFERNLLNSVLVSTVVVAISLLLGVTASYAlGRIRFRGRNIVLLTILGVSM-FPQVAVLSGLF 124
Cdd:COG4135  338 LPSSWTLRFWQR--AAPGLLEPLGNTLLLALASALIALVLVLACLEA-EARRGRRPGRRALWLLYLPLlVPQIAFLFGLQ 414

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491647135 125 ELIRAFGLYNSMPGLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAF 201
Cdd:COG4135  415 VLLLRLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGF 491
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
71-208 7.03e-05

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 43.20  E-value: 7.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  71 SVLVSTVVVAISLLLGVTASYALGRIRFRGRNIvLLTILGVSmFPQVAVLSGLFELI--------------RAFGLYNSM 136
Cdd:PRK11602  69 TVLIALIAVPVNLVFGILLAWLVTRFNFPGRQL-LLTLLDIP-FAVSPVVAGLVYLLfygsngplggwldeHNLQLMFSW 146

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491647135 137 PGLALAYMIFTLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEF 208
Cdd:PRK11602 147 PGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF 218
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 7-211 1.44e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 39.45  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135   7 LQVGFYLLVAVIVVFSVFPFyyaivtsfksGSALFQVVYLPSSLDWgnYASVFSGGVFERNLLNSVLVSTVVVAISLLLG 86
Cdd:PRK10592  16 LVLGFTFLYAPMLMLVIYSF----------NSSKLVTVWAGWSTRW--YGELFRDDAMMSAVGLSLTIAACAATAAAILG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  87 VTASYALGRI-RFRGRNIVLLTILGVSMFPQVavLSGLFELIRAFGLYNS--------MPGLALAYMIFTLPFTVWVLTT 157
Cdd:PRK10592  84 TIAAVVMVRFgRFRGSNGFAFMITAPLVMPDV--ITGLSLLLLFVALAHAigwpadrgMLTIWLAHVTFCTAYVAVVISS 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 491647135 158 FMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTGLLAFIAAWNEFLFA 211
Cdd:PRK10592 162 RLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIA 215
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 118-266 3.93e-03

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 38.02  E-value: 3.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  118 AVLSGLFELIRAFGLYNSMPGLALAYMIftLPFTVWVLTTFMKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALVTTG 197
Cdd:TIGR02138 135 PFLGSNLGLIPLFGGPILTAGIVLAIMI--LPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAV 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135  198 LLAFIAAWNEFLfALTFTLTNEQ-----------RTVPVAIAL-ISGAGQYELPWGTIMAASVIVTVpLIVLVLVFQRRI 265
Cdd:TIGR02138 213 VLGLGRALGETM-AVTMVIGNVFpisplslfdpgTTITSLIANqFGEASGGSVHTSALFALGLVLFV-ITLLVNILARYI 290


                  .
gi 491647135  266 V 266
Cdd:TIGR02138 291 V 291
malF PRK10999
maltose ABC transporter permease MalF;
159-218 6.79e-03

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 37.63  E-value: 6.79e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647135 159 MKQLPLELEEAAIVDGATPWQIITKVLMPLLWPALvtTGLLAFIAAWNEFLFALTFTLTN 218
Cdd:PRK10999 398 LKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPL--TPLMIASFAFNFNNFVLIQLLTN 455
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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