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Conserved domains on  [gi|491994778|ref|WP_005711396|]
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cyd operon YbgE family protein [Glaesserella parasuis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YbgE COG3790
Predicted membrane protein, encoded in cydAB operon [Function unknown];
1-95 1.22e-25

Predicted membrane protein, encoded in cydAB operon [Function unknown];


:

Pssm-ID: 443004  Cd Length: 98  Bit Score: 91.11  E-value: 1.22e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491994778  1 MVNSLYQLTRKGWLQALSFILSIAMFAMILLYSNTFALYFGGKIPYLVAGVFYGMLILFVHGFGFEIKSTRWQMVFMPLL 80
Cdd:COG3790   4 MIDSLYQLTDKGPLRALSLILALALAGCVLWDPSRFAARTGGLSHWLGLLLIWAVCAGFIHGVGFRPRRWLWRLLFSPLL 83

                        90
                ....*....|....*
gi 491994778 81 GYAIILPSLIALVVL 95
Cdd:COG3790  84 AYLILIAGLYYFFLG 98
 
Name Accession Description Interval E-value
YbgE COG3790
Predicted membrane protein, encoded in cydAB operon [Function unknown];
1-95 1.22e-25

Predicted membrane protein, encoded in cydAB operon [Function unknown];


Pssm-ID: 443004  Cd Length: 98  Bit Score: 91.11  E-value: 1.22e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491994778  1 MVNSLYQLTRKGWLQALSFILSIAMFAMILLYSNTFALYFGGKIPYLVAGVFYGMLILFVHGFGFEIKSTRWQMVFMPLL 80
Cdd:COG3790   4 MIDSLYQLTDKGPLRALSLILALALAGCVLWDPSRFAARTGGLSHWLGLLLIWAVCAGFIHGVGFRPRRWLWRLLFSPLL 83

                        90
                ....*....|....*
gi 491994778 81 GYAIILPSLIALVVL 95
Cdd:COG3790  84 AYLILIAGLYYFFLG 98
cyd_oper_ybgE TIGR02112
cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 ...
 2-90 2.80e-18

cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria. [Energy metabolism, Electron transport]


Pssm-ID: 131167  Cd Length: 93  Bit Score: 72.39  E-value: 2.80e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491994778   2 VNSLYQLTRKGWLQALSFILSIAMFAMILLYSNTFALYFGGKIPYLVAGVFYGMLILFVHGFGFEIKSTRWQMVFMPLLG 81
Cdd:TIGR02112  1 IASLYELMDKGLLRALSFILAFLLAGCVFWDPNRFAAAIGGFNAVLALLMIWAVCILWIHGVGFRPRSTLWQLLFSPILG 80


                 ....*....
gi 491994778  82 YAIILPSLI 90
Cdd:TIGR02112 81 YIILIYLLI 89
Cyd_oper_YbgE pfam09600
Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown ...
 14-89 5.85e-17

Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.


Pssm-ID: 430707  Cd Length: 76  Bit Score: 68.40  E-value: 5.85e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491994778  14 LQALSFILSIAMFAMILLYSNTFALYFGGKIPYLVAGVFYGMLILFVHGFGFEIKSTRWQMVFMPLLGYAIILPSL 89
Cdd:pfam09600  1 LRALSLLLALALAGCVLWDPNRFAAATGGLDHWLAPLLIWAVCAGFIHGVGFRPRRWIWRLLFSPLLAWLILIYGL 76
PRK10588 PRK10588
hypothetical protein; Provisional
 1-90 4.63e-04

hypothetical protein; Provisional


Pssm-ID: 236721  Cd Length: 97  Bit Score: 35.87  E-value: 4.63e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491994778  1 MVNSLYQLTRKGWLQALSFILSIAMFAMILLYSNTFAlyfgGKIPYLvaGVFYGMLILF------VHGFGFEIKSTRWQM 74
Cdd:PRK10588  4 IIDKLYAVMDKRPLRALSLVMALLLAGCMFWDPSRFA----AKTSSL--EIWHGLLLMWavcagvIHGVGFRPQKVLWQG 77

                        90
                ....*....|....*.
gi 491994778 75 VFMPLLGYAIILPSLI 90
Cdd:PRK10588 78 IFCPLPADIVLIVGLI 93
 
Name Accession Description Interval E-value
YbgE COG3790
Predicted membrane protein, encoded in cydAB operon [Function unknown];
1-95 1.22e-25

Predicted membrane protein, encoded in cydAB operon [Function unknown];


Pssm-ID: 443004  Cd Length: 98  Bit Score: 91.11  E-value: 1.22e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491994778  1 MVNSLYQLTRKGWLQALSFILSIAMFAMILLYSNTFALYFGGKIPYLVAGVFYGMLILFVHGFGFEIKSTRWQMVFMPLL 80
Cdd:COG3790   4 MIDSLYQLTDKGPLRALSLILALALAGCVLWDPSRFAARTGGLSHWLGLLLIWAVCAGFIHGVGFRPRRWLWRLLFSPLL 83

                        90
                ....*....|....*
gi 491994778 81 GYAIILPSLIALVVL 95
Cdd:COG3790  84 AYLILIAGLYYFFLG 98
cyd_oper_ybgE TIGR02112
cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 ...
 2-90 2.80e-18

cyd operon protein YbgE; This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria. [Energy metabolism, Electron transport]


Pssm-ID: 131167  Cd Length: 93  Bit Score: 72.39  E-value: 2.80e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491994778   2 VNSLYQLTRKGWLQALSFILSIAMFAMILLYSNTFALYFGGKIPYLVAGVFYGMLILFVHGFGFEIKSTRWQMVFMPLLG 81
Cdd:TIGR02112  1 IASLYELMDKGLLRALSFILAFLLAGCVFWDPNRFAAAIGGFNAVLALLMIWAVCILWIHGVGFRPRSTLWQLLFSPILG 80


                 ....*....
gi 491994778  82 YAIILPSLI 90
Cdd:TIGR02112 81 YIILIYLLI 89
Cyd_oper_YbgE pfam09600
Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown ...
 14-89 5.85e-17

Cyd operon protein YbgE (Cyd_oper_YbgE); This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria.


Pssm-ID: 430707  Cd Length: 76  Bit Score: 68.40  E-value: 5.85e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491994778  14 LQALSFILSIAMFAMILLYSNTFALYFGGKIPYLVAGVFYGMLILFVHGFGFEIKSTRWQMVFMPLLGYAIILPSL 89
Cdd:pfam09600  1 LRALSLLLALALAGCVLWDPNRFAAATGGLDHWLAPLLIWAVCAGFIHGVGFRPRRWIWRLLFSPLLAWLILIYGL 76
PRK10588 PRK10588
hypothetical protein; Provisional
 1-90 4.63e-04

hypothetical protein; Provisional


Pssm-ID: 236721  Cd Length: 97  Bit Score: 35.87  E-value: 4.63e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491994778  1 MVNSLYQLTRKGWLQALSFILSIAMFAMILLYSNTFAlyfgGKIPYLvaGVFYGMLILF------VHGFGFEIKSTRWQM 74
Cdd:PRK10588  4 IIDKLYAVMDKRPLRALSLVMALLLAGCMFWDPSRFA----AKTSSL--EIWHGLLLMWavcagvIHGVGFRPQKVLWQG 77

                        90
                ....*....|....*.
gi 491994778 75 VFMPLLGYAIILPSLI 90
Cdd:PRK10588 78 IFCPLPADIVLIVGLI 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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