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Conserved domains on  [gi|491995854|ref|WP_005712345|]
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exodeoxyribonuclease VII small subunit [Glaesserella parasuis]

Protein Classification

exodeoxyribonuclease VII small subunit( domain architecture ID 10011590)

small subunit of exodeoxyribonuclease VII, which degrades single-stranded DNA bidirectionally into nucleoside 5'-phosphates

EC:  3.1.11.6
Gene Ontology:  GO:0008855|GO:0004527|GO:0006308
PubMed:  6284744
SCOP:  4002913

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 1-72 6.89e-23

exodeoxyribonuclease VII small subunit; Provisional


:

Pssm-ID: 179195  Cd Length: 80  Bit Score: 82.65  E-value: 6.89e-23
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491995854  1 MAKKPTLDFETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLQKNEHADLTD 72
Cdd:PRK00977  4 AKKSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEASLE 75
 
Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 1-72 6.89e-23

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 179195  Cd Length: 80  Bit Score: 82.65  E-value: 6.89e-23
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491995854  1 MAKKPTLDFETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLQKNEHADLTD 72
Cdd:PRK00977  4 AKKSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEASLE 75
XseB COG1722
Exonuclease VII small subunit [Replication, recombination and repair];
3-73 2.66e-18

Exonuclease VII small subunit [Replication, recombination and repair];


Pssm-ID: 441328  Cd Length: 74  Bit Score: 71.03  E-value: 2.66e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491995854  3 KKPTLDFETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLQKNEHADLTDY 73
Cdd:COG1722   1 DKKELSFEEALAELEEIVERLESGELPLEESLALYERGVALAKRCQKKLDEAEQKVEKLLEDEDGELEEPF 71
Exonuc_VII_S pfam02609
Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11. ...
 9-59 3.87e-14

Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.


Pssm-ID: 460618  Cd Length: 51  Bit Score: 59.70  E-value: 3.87e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 491995854   9 FETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQ 59
Cdd:pfam02609  1 FEEALAELEEIVEKLESGELSLEESLKLYEEGIKLLKFCEKKLDEAEQKIE 51
xseB TIGR01280
exodeoxyribonuclease VII, small subunit; This protein is the small subunit for ...
 8-61 5.85e-14

exodeoxyribonuclease VII, small subunit; This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA]


Pssm-ID: 273536  Cd Length: 54  Bit Score: 59.36  E-value: 5.85e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 491995854   8 DFETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQIL 61
Cdd:TIGR01280  1 SFEEALAELEEIVEKLESGDLSLEESLKLYEEGIKLLKHCQKKLEEAEQKIEKL 54
 
Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 1-72 6.89e-23

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 179195  Cd Length: 80  Bit Score: 82.65  E-value: 6.89e-23
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491995854  1 MAKKPTLDFETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLQKNEHADLTD 72
Cdd:PRK00977  4 AKKSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEASLE 75
XseB COG1722
Exonuclease VII small subunit [Replication, recombination and repair];
3-73 2.66e-18

Exonuclease VII small subunit [Replication, recombination and repair];


Pssm-ID: 441328  Cd Length: 74  Bit Score: 71.03  E-value: 2.66e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491995854  3 KKPTLDFETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLQKNEHADLTDY 73
Cdd:COG1722   1 DKKELSFEEALAELEEIVERLESGELPLEESLALYERGVALAKRCQKKLDEAEQKVEKLLEDEDGELEEPF 71
Exonuc_VII_S pfam02609
Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11. ...
 9-59 3.87e-14

Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.


Pssm-ID: 460618  Cd Length: 51  Bit Score: 59.70  E-value: 3.87e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 491995854   9 FETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQ 59
Cdd:pfam02609  1 FEEALAELEEIVEKLESGELSLEESLKLYEEGIKLLKFCEKKLDEAEQKIE 51
xseB TIGR01280
exodeoxyribonuclease VII, small subunit; This protein is the small subunit for ...
 8-61 5.85e-14

exodeoxyribonuclease VII, small subunit; This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA]


Pssm-ID: 273536  Cd Length: 54  Bit Score: 59.36  E-value: 5.85e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 491995854   8 DFETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQIL 61
Cdd:TIGR01280  1 SFEEALAELEEIVEKLESGDLSLEESLKLYEEGIKLLKHCQKKLEEAEQKIEKL 54
PRK14066 PRK14066
exodeoxyribonuclease VII small subunit; Provisional
 9-66 1.79e-10

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172556  Cd Length: 75  Bit Score: 51.38  E-value: 1.79e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 491995854  9 FETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLQKNE 66
Cdd:PRK14066  6 FETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEAERRVEVLLKQKD 63
PRK14067 PRK14067
exodeoxyribonuclease VII small subunit; Provisional
 1-60 6.51e-09

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172557  Cd Length: 80  Bit Score: 47.50  E-value: 6.51e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 491995854  1 MAKKPTLDFETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQI 60
Cdd:PRK14067  1 AGRKKTADFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEIRL 60
PRK14063 PRK14063
exodeoxyribonuclease VII small subunit; Provisional
 3-65 4.88e-08

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184483  Cd Length: 76  Bit Score: 45.20  E-value: 4.88e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 491995854  3 KKPTLDFETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLQKN 65
Cdd:PRK14063  1 MENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVILGED 63
PRK14070 PRK14070
exodeoxyribonuclease VII small subunit; Provisional
 13-66 3.92e-06

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184486  Cd Length: 69  Bit Score: 40.01  E-value: 3.92e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 491995854 13 LKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLQKNE 66
Cdd:PRK14070  1 MKELEEIVNRLENEDLPLEESIKLFERGVELYRKCKEILQQNRLKIIDVMKELE 54
PRK14069 PRK14069
exodeoxyribonuclease VII small subunit; Provisional
 3-61 6.86e-06

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172559  Cd Length: 95  Bit Score: 40.00  E-value: 6.86e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 491995854  3 KKPTLDFETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQIL 61
Cdd:PRK14069  4 KKSKISFEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAEGKIEAL 62
PRK14064 PRK14064
exodeoxyribonuclease VII small subunit; Provisional
 9-58 1.12e-04

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172554  Cd Length: 75  Bit Score: 36.35  E-value: 1.12e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 491995854  9 FETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRI 58
Cdd:PRK14064  8 FEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRM 57
PRK14068 PRK14068
exodeoxyribonuclease VII small subunit; Provisional
 4-65 1.92e-03

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184485  Cd Length: 76  Bit Score: 33.31  E-value: 1.92e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491995854  4 KPTLDFETTLKELEEIVNRLETGDLPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLQKN 65
Cdd:PRK14068  3 KETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLIKEE 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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