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Conserved domains on  [gi|492622923|ref|WP_005905476|]
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MULTISPECIES: electron transport complex subunit RsxC [Fusobacterium]

Protein Classification

electron transport complex subunit RsxC( domain architecture ID 11493329)

electron transport complex subunit RsxC is part of a membrane complex involved in electron transport and is required to maintain the reduced state of SoxR

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rnfC TIGR01945
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ...
 3-426 0e+00

electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]


:

Pssm-ID: 273888 [Multi-domain]  Cd Length: 435  Bit Score: 702.56  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923    3 FFGFRGGVHPPENKIQTEHLPIEKLESPDEIFVPLLQHIGVPLNPLVNVGDRVLKGQKIADAEG-LAVPIHSPVSGTVTK 81
Cdd:TIGR01945   1 LFTFKGGIHPPENKELSNDKPIEQLPLPQELIVPLSQHIGAPAEPIVKVGDKVLKGQKIAKADGfVSAPIHAPTSGTVVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923   82 IESRVFP-LTG-KVMTVFIENDKKEEWAELTKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDSLIL 159
Cdd:TIGR01945  81 IEERVSPhASGlPVPAIVIEPDGEDEWIELEPIPDFENLSPEEILEKIRAAGIVGLGGATFPTHVKLNPPPEKKIETLII 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  160 NGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATEGTGINIVPLKTKYPQGGEKQL 239
Cdd:TIGR01945 161 NGAECEPYLTCDDRLMRERAEEIIGGIRILLKILGVKKVVIGIEDNKPEAIAALKKALGGYNIKVRVLPTKYPQGGEKQL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  240 IKSVLNREVPSGQLPSAVGVVVQNTGTAAAIYEAVVNGKPLIEKIVTVSGKAIKNPKNLKIAIGTPFSYILDYCGVDREK 319
Cdd:TIGR01945 241 IYALTGREVPSGGLPADIGVVVQNVGTAFAIYEAVVNGKPLIERVVTVTGDAIRRPKNLWVLIGTPVSDILAFCGGFREK 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  320 MERLVMGGPMMGLAQMTEDATVIKGTSGLLALTTEEMRPYKTKSCISCSKCVSACPMGLEPLMFDRLAANKQYDEMAEYN 399
Cdd:TIGR01945 321 PERLIMGGPMMGLALPSLDVPVTKGTSGILALDKEETPESPEKPCIRCGKCVQVCPMNLLPQQLNWLALADEFDEAEEHN 400

                         410       420
                  ....*....|....*....|....*..
gi 492622923  400 LMDCIECGSCNYICPANRPLAEAIKTG 426
Cdd:TIGR01945 401 LMDCIECGCCSYVCPSNIPLVQYIRQA 427
 
Name Accession Description Interval E-value
rnfC TIGR01945
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ...
 3-426 0e+00

electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273888 [Multi-domain]  Cd Length: 435  Bit Score: 702.56  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923    3 FFGFRGGVHPPENKIQTEHLPIEKLESPDEIFVPLLQHIGVPLNPLVNVGDRVLKGQKIADAEG-LAVPIHSPVSGTVTK 81
Cdd:TIGR01945   1 LFTFKGGIHPPENKELSNDKPIEQLPLPQELIVPLSQHIGAPAEPIVKVGDKVLKGQKIAKADGfVSAPIHAPTSGTVVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923   82 IESRVFP-LTG-KVMTVFIENDKKEEWAELTKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDSLIL 159
Cdd:TIGR01945  81 IEERVSPhASGlPVPAIVIEPDGEDEWIELEPIPDFENLSPEEILEKIRAAGIVGLGGATFPTHVKLNPPPEKKIETLII 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  160 NGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATEGTGINIVPLKTKYPQGGEKQL 239
Cdd:TIGR01945 161 NGAECEPYLTCDDRLMRERAEEIIGGIRILLKILGVKKVVIGIEDNKPEAIAALKKALGGYNIKVRVLPTKYPQGGEKQL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  240 IKSVLNREVPSGQLPSAVGVVVQNTGTAAAIYEAVVNGKPLIEKIVTVSGKAIKNPKNLKIAIGTPFSYILDYCGVDREK 319
Cdd:TIGR01945 241 IYALTGREVPSGGLPADIGVVVQNVGTAFAIYEAVVNGKPLIERVVTVTGDAIRRPKNLWVLIGTPVSDILAFCGGFREK 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  320 MERLVMGGPMMGLAQMTEDATVIKGTSGLLALTTEEMRPYKTKSCISCSKCVSACPMGLEPLMFDRLAANKQYDEMAEYN 399
Cdd:TIGR01945 321 PERLIMGGPMMGLALPSLDVPVTKGTSGILALDKEETPESPEKPCIRCGKCVQVCPMNLLPQQLNWLALADEFDEAEEHN 400

                         410       420
                  ....*....|....*....|....*..
gi 492622923  400 LMDCIECGSCNYICPANRPLAEAIKTG 426
Cdd:TIGR01945 401 LMDCIECGCCSYVCPSNIPLVQYIRQA 427
RnfC COG4656
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ...
 1-426 0e+00

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 443694 [Multi-domain]  Cd Length: 451  Bit Score: 690.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923   1 MTFFGFRGGVHPPENKIQTEHLPIEKLESPDEIFVPLLQHIGVPLNPLVNVGDRVLKGQKIADAEG-LAVPIHSPVSGTV 79
Cdd:COG4656    1 MKLWTFKGGIHPPENKELSADKPIERLPLPEKLVIPLQQHIGAPAEPLVKVGDKVLKGQLIAEADGfVSAPVHAPVSGTV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  80 TKIESRVFPLTGKVMTVFIENDKKEEWAELTKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDSLIL 159
Cdd:COG4656   81 VAIEPAPHPSGLKVLCIVIEPDGEDEWIELEPLADYEDLSPEEIIERIREAGIVGLGGAGFPTHVKLSPPPDKKIDTLII 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 160 NGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATEG-TGINIVPLKTKYPQGGEKQ 238
Cdd:COG4656  161 NGAECEPYLTCDDRLMRERAEEIIEGIRILMKALGAKKVIIGIEDNKPEAIAALRKALAGdDDIEVVVLPTKYPQGGEKQ 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 239 LIKSVLNREVPSGQLPSAVGVVVQNTGTAAAIYEAVVNGKPLIEKIVTVSGKAIKNPKNLKIAIGTPFSYILDYCGVDRE 318
Cdd:COG4656  241 LIKALTGREVPSGGLPADVGVVVQNVGTAYAIYRAVRDGKPLIERVVTVTGDAVKEPGNLLVRIGTPVSDLLEQAGGFKE 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 319 KMERLVMGGPMMGLAQMTEDATVIKGTSGLLALTTEEMRPYKTKSCISCSKCVSACPMGLEPLMFDRLAANKQYDEMAEY 398
Cdd:COG4656  321 EPGKLIMGGPMMGFALPSLDVPVTKGTNGILALTKEEVPPPEEQPCIRCGRCVDACPMGLLPQQLYWYARAGDFDKAEEY 400

                        410       420
                 ....*....|....*....|....*...
gi 492622923 399 NLMDCIECGSCNYICPANRPLAEAIKTG 426
Cdd:COG4656  401 NLMDCIECGCCSYVCPSKIPLVQYIRLA 428
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 2-421 0e+00

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 531.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923   2 TFFGFRGGVHPPENKIQTEHLPIEKLESPDEIFVPLLQHIGVPLNPLVNVGDRVLKGQKIADAEGL-AVPIHSPVSGTVT 80
Cdd:PRK05035   6 KLWDFPGGIHPPEMKTQSNGTPIRQAPLPQRLVIPLKQHIGAEGELCVKVGDRVLKGQPLTQGDGRmSLPVHAPTSGTVV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  81 KIESRVFP----LTgkVMTVFIENDKKEEWAELTKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNtKLDS 156
Cdd:PRK05035  86 AIEPHPTAhpsgLA--ELCVVIEPDGEDRWIERQPWADYRQLSPEELIERIRQAGIAGLGGAGFPTAVKLQPGGD-KIET 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 157 LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATEGTG-INIVPLKTKYPQGG 235
Cdd:PRK05035 163 LIINGAECEPYITADDRLMRERADEIIEGIRILAHLLQPKEVLIGIEDNKPEAIAALRAALAGADdIRVRVIPTKYPSGG 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 236 EKQLIKSVLNREVPSGQLPSAVGVVVQNTGTAAAIYEAVVNGKPLIEKIVTVSGKAIKNPKNLKIAIGTPFSYILDYCGV 315
Cdd:PRK05035 243 EKQLIQILTGKEVPSGGRPADIGVLMQNVGTAYAIKRAVIDGEPLIERVVTLTGEAVARPGNVWARLGTPVRHLLNQAGF 322

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 316 DREKMERLVMGGPMMGLAQMTEDATVIKGTSGLLALTTEEMRPYKT-KSCISCSKCVSACPMGLEPLMFDRLAANKQYDE 394
Cdd:PRK05035 323 KPDADQRVIMGGPMMGFTLPSLDVPVVKTTNCLLAPSATELPPPPPeQPCIRCGACADACPASLLPQQLYWFAKAEEHDK 402

                        410       420
                 ....*....|....*....|....*..
gi 492622923 395 MAEYNLMDCIECGSCNYICPANRPLAE 421
Cdd:PRK05035 403 AQEYNLFDCIECGACAYVCPSNIPLVQ 429
Complex1_51K pfam01512
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
127-271 4.14e-66

Respiratory-chain NADH dehydrogenase 51 Kd subunit;


Pssm-ID: 460237 [Multi-domain]  Cd Length: 150  Bit Score: 208.14  E-value: 4.14e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  127 IREKGIVGIGGATFPTHVKLNPPPNTKLDSLILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNK 206
Cdd:pfam01512   1 VKEAGIVGRGGAGFPTHVKLSPPPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRDEK 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  207 PEAIESMRKATEGTG-----INIVPLKTKYPQGGEKQLIKSVLNREVPSGQLPSAVGVVVQNTGTAAAIY 271
Cdd:pfam01512  81 PEAIAALEKAIAEARaagfdIEVHRGAGAYPCGEEKALIYSLTGRGVPRGKPPADVGVVVNNVETLAAVP 150
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 362-416 1.11e-04

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 41.61  E-value: 1.11e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 492622923 362 KSCISCSKCVSACPMG-LEplMFDRLAANKQYDEMAEYNLMDCIECGSCNYICPAN 416
Cdd:cd10549   40 DKCVFCGACVEVCPTGaIE--LTPEGKEYVPKEKEAEIDEEKCIGCGLCVKVCPVD 93
 
Name Accession Description Interval E-value
rnfC TIGR01945
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ...
 3-426 0e+00

electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273888 [Multi-domain]  Cd Length: 435  Bit Score: 702.56  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923    3 FFGFRGGVHPPENKIQTEHLPIEKLESPDEIFVPLLQHIGVPLNPLVNVGDRVLKGQKIADAEG-LAVPIHSPVSGTVTK 81
Cdd:TIGR01945   1 LFTFKGGIHPPENKELSNDKPIEQLPLPQELIVPLSQHIGAPAEPIVKVGDKVLKGQKIAKADGfVSAPIHAPTSGTVVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923   82 IESRVFP-LTG-KVMTVFIENDKKEEWAELTKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDSLIL 159
Cdd:TIGR01945  81 IEERVSPhASGlPVPAIVIEPDGEDEWIELEPIPDFENLSPEEILEKIRAAGIVGLGGATFPTHVKLNPPPEKKIETLII 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  160 NGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATEGTGINIVPLKTKYPQGGEKQL 239
Cdd:TIGR01945 161 NGAECEPYLTCDDRLMRERAEEIIGGIRILLKILGVKKVVIGIEDNKPEAIAALKKALGGYNIKVRVLPTKYPQGGEKQL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  240 IKSVLNREVPSGQLPSAVGVVVQNTGTAAAIYEAVVNGKPLIEKIVTVSGKAIKNPKNLKIAIGTPFSYILDYCGVDREK 319
Cdd:TIGR01945 241 IYALTGREVPSGGLPADIGVVVQNVGTAFAIYEAVVNGKPLIERVVTVTGDAIRRPKNLWVLIGTPVSDILAFCGGFREK 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  320 MERLVMGGPMMGLAQMTEDATVIKGTSGLLALTTEEMRPYKTKSCISCSKCVSACPMGLEPLMFDRLAANKQYDEMAEYN 399
Cdd:TIGR01945 321 PERLIMGGPMMGLALPSLDVPVTKGTSGILALDKEETPESPEKPCIRCGKCVQVCPMNLLPQQLNWLALADEFDEAEEHN 400

                         410       420
                  ....*....|....*....|....*..
gi 492622923  400 LMDCIECGSCNYICPANRPLAEAIKTG 426
Cdd:TIGR01945 401 LMDCIECGCCSYVCPSNIPLVQYIRQA 427
RnfC COG4656
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ...
 1-426 0e+00

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 443694 [Multi-domain]  Cd Length: 451  Bit Score: 690.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923   1 MTFFGFRGGVHPPENKIQTEHLPIEKLESPDEIFVPLLQHIGVPLNPLVNVGDRVLKGQKIADAEG-LAVPIHSPVSGTV 79
Cdd:COG4656    1 MKLWTFKGGIHPPENKELSADKPIERLPLPEKLVIPLQQHIGAPAEPLVKVGDKVLKGQLIAEADGfVSAPVHAPVSGTV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  80 TKIESRVFPLTGKVMTVFIENDKKEEWAELTKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDSLIL 159
Cdd:COG4656   81 VAIEPAPHPSGLKVLCIVIEPDGEDEWIELEPLADYEDLSPEEIIERIREAGIVGLGGAGFPTHVKLSPPPDKKIDTLII 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 160 NGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATEG-TGINIVPLKTKYPQGGEKQ 238
Cdd:COG4656  161 NGAECEPYLTCDDRLMRERAEEIIEGIRILMKALGAKKVIIGIEDNKPEAIAALRKALAGdDDIEVVVLPTKYPQGGEKQ 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 239 LIKSVLNREVPSGQLPSAVGVVVQNTGTAAAIYEAVVNGKPLIEKIVTVSGKAIKNPKNLKIAIGTPFSYILDYCGVDRE 318
Cdd:COG4656  241 LIKALTGREVPSGGLPADVGVVVQNVGTAYAIYRAVRDGKPLIERVVTVTGDAVKEPGNLLVRIGTPVSDLLEQAGGFKE 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 319 KMERLVMGGPMMGLAQMTEDATVIKGTSGLLALTTEEMRPYKTKSCISCSKCVSACPMGLEPLMFDRLAANKQYDEMAEY 398
Cdd:COG4656  321 EPGKLIMGGPMMGFALPSLDVPVTKGTNGILALTKEEVPPPEEQPCIRCGRCVDACPMGLLPQQLYWYARAGDFDKAEEY 400

                        410       420
                 ....*....|....*....|....*...
gi 492622923 399 NLMDCIECGSCNYICPANRPLAEAIKTG 426
Cdd:COG4656  401 NLMDCIECGCCSYVCPSKIPLVQYIRLA 428
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 2-421 0e+00

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 531.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923   2 TFFGFRGGVHPPENKIQTEHLPIEKLESPDEIFVPLLQHIGVPLNPLVNVGDRVLKGQKIADAEGL-AVPIHSPVSGTVT 80
Cdd:PRK05035   6 KLWDFPGGIHPPEMKTQSNGTPIRQAPLPQRLVIPLKQHIGAEGELCVKVGDRVLKGQPLTQGDGRmSLPVHAPTSGTVV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  81 KIESRVFP----LTgkVMTVFIENDKKEEWAELTKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNtKLDS 156
Cdd:PRK05035  86 AIEPHPTAhpsgLA--ELCVVIEPDGEDRWIERQPWADYRQLSPEELIERIRQAGIAGLGGAGFPTAVKLQPGGD-KIET 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 157 LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATEGTG-INIVPLKTKYPQGG 235
Cdd:PRK05035 163 LIINGAECEPYITADDRLMRERADEIIEGIRILAHLLQPKEVLIGIEDNKPEAIAALRAALAGADdIRVRVIPTKYPSGG 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 236 EKQLIKSVLNREVPSGQLPSAVGVVVQNTGTAAAIYEAVVNGKPLIEKIVTVSGKAIKNPKNLKIAIGTPFSYILDYCGV 315
Cdd:PRK05035 243 EKQLIQILTGKEVPSGGRPADIGVLMQNVGTAYAIKRAVIDGEPLIERVVTLTGEAVARPGNVWARLGTPVRHLLNQAGF 322

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 316 DREKMERLVMGGPMMGLAQMTEDATVIKGTSGLLALTTEEMRPYKT-KSCISCSKCVSACPMGLEPLMFDRLAANKQYDE 394
Cdd:PRK05035 323 KPDADQRVIMGGPMMGFTLPSLDVPVVKTTNCLLAPSATELPPPPPeQPCIRCGACADACPASLLPQQLYWFAKAEEHDK 402

                        410       420
                 ....*....|....*....|....*..
gi 492622923 395 MAEYNLMDCIECGSCNYICPANRPLAE 421
Cdd:PRK05035 403 AQEYNLFDCIECGACAYVCPSNIPLVQ 429
Complex1_51K pfam01512
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
127-271 4.14e-66

Respiratory-chain NADH dehydrogenase 51 Kd subunit;


Pssm-ID: 460237 [Multi-domain]  Cd Length: 150  Bit Score: 208.14  E-value: 4.14e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  127 IREKGIVGIGGATFPTHVKLNPPPNTKLDSLILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNK 206
Cdd:pfam01512   1 VKEAGIVGRGGAGFPTHVKLSPPPKKKIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRDEK 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  207 PEAIESMRKATEGTG-----INIVPLKTKYPQGGEKQLIKSVLNREVPSGQLPSAVGVVVQNTGTAAAIY 271
Cdd:pfam01512  81 PEAIAALEKAIAEARaagfdIEVHRGAGAYPCGEEKALIYSLTGRGVPRGKPPADVGVVVNNVETLAAVP 150
RnfC_N pfam13375
RnfC Barrel sandwich hybrid domain; This domain is part of the barrel sandwich hybrid ...
 4-103 6.19e-46

RnfC Barrel sandwich hybrid domain; This domain is part of the barrel sandwich hybrid superfamily. It is found at the N-terminus of the RnfC Electron transport complex protein. It appears to be most related to the N-terminal NQRA domain (pfam05896).


Pssm-ID: 433157 [Multi-domain]  Cd Length: 101  Bit Score: 154.25  E-value: 6.19e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923    4 FGFRGGVHPPENKIQTEHLPIEKLESPDEIFVPLLQHIGVPLNPLVNVGDRVLKGQKIADAEGL-AVPIHSPVSGTVTKI 82
Cdd:pfam13375   1 WTFKGGIHPPENKELSKDKPIEKLPLPKELVIPLSQHIGAPAEPIVKVGDRVLKGQKIAEADGFvSAPVHASVSGTVKAI 80

                          90       100
                  ....*....|....*....|.
gi 492622923   83 ESRVFPLTGKVMTVFIENDKK 103
Cdd:pfam13375  81 EPRPVPHGSGVNCIVIENDGE 101
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 364-416 5.44e-10

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 54.84  E-value: 5.44e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 492622923  364 CISCSKCVSACPMGLepLMFDRLAANKQYDEMaEYNLMDCIECGSCNYICPAN 416
Cdd:pfam12838   1 CIGCGACVAACPVGA--ITLDEVGEKKGTKTV-VIDPERCVGCGACVAVCPTG 50
Fer4_17 pfam13534
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ...
 364-416 3.38e-09

4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 433287 [Multi-domain]  Cd Length: 61  Bit Score: 52.85  E-value: 3.38e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 492622923  364 CISCSKCVSACPM----GLEPLMFDRLAANKQYDE-MAEYNLMDCIECGSCNYICPAN 416
Cdd:pfam13534   2 CIQCGCCVDECPRyllnGDEPKKLMRAAYLGDLEElQANKVANLCSECGLCEYACPMG 59
Fer4_10 pfam13237
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ...
 364-414 7.76e-09

4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 404174 [Multi-domain]  Cd Length: 56  Bit Score: 51.48  E-value: 7.76e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 492622923  364 CISCSKCVSACPMGLEPLMFDRLAAnkqYDEMAEYNLMDCIECGSCNYICP 414
Cdd:pfam13237   9 CIGCGRCTAACPAGLTRVGAIVERL---EGEAVRIGVWKCIGCGACVEACP 56
Fer4_8 pfam13183
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 364-416 9.44e-08

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 433017 [Multi-domain]  Cd Length: 64  Bit Score: 48.85  E-value: 9.44e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492622923  364 CISCSKCVSACP----MGLEPLMF--DRLAANKQYDEM---AEYNLMDCIECGSCNYICPAN 416
Cdd:pfam13183   2 CIRCGACLAACPvylvTGGRFPGDprGGAAALLGRLEAlegLAEGLWLCTLCGACTEVCPVG 63
Fer4_16 pfam13484
4Fe-4S double cluster binding domain;
364-416 3.22e-07

4Fe-4S double cluster binding domain;


Pssm-ID: 463893 [Multi-domain]  Cd Length: 65  Bit Score: 47.10  E-value: 3.22e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492622923  364 CISCSKCVSACP---MGLEPLMFD-------RLAANKQY--DEMAEYNLMDCIECGSCNYICPAN 416
Cdd:pfam13484   1 CGSCGKCIDACPtgaIVGPEGVLDarrcisyLTIEKKGLipDELRCLLGNRCYGCDICQDVCPWN 65
PRK11278 PRK11278
NADH-quinone oxidoreductase subunit NuoF;
88-314 4.42e-07

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 236891 [Multi-domain]  Cd Length: 448  Bit Score: 51.73  E-value: 4.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  88 PLTGKvmtvfIENDKKEEWAELTKIENWEEADKKAL--------LDIIREKGIVGIGGATFPTHVK--LNPP-PNTKLDS 156
Cdd:PRK11278  13 PLTWR-----LRDDKQPVWLDEYRSKNGYEGARKALtgmspdeiVNQVKDAGLKGRGGAGFSTGLKwsLMPKdESMNIRY 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 157 LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATE-------------GTGIN 223
Cdd:PRK11278  88 LLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAeateagllgknimGTGFD 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 224 I-VPLKT---KYPQGGEKQLIKSVLNREV-PSGQ--LPSAVGV-----VVQNTGTAAAIYEAVVNGKPLIE--------- 282
Cdd:PRK11278 168 FeLFVHTgagRYICGEETALINSLEGRRAnPRSKppFPATSGVwgkptCVNNVETLCNVPAILANGVEWYQniskgkskd 247

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 492622923 283 ---KIVTVSGKaIKNPKNLKIAIGTPFSYIL-DYCG 314
Cdd:PRK11278 248 agtKLMGFSGR-VKNPGLWELPFGTTAREILeDYAG 282
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 355-416 1.50e-06

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 47.02  E-value: 1.50e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492622923  355 EMRPYKTKSCISCSKCVSACPMGLEPLMFDRLAANKQYDEMAEYNLMDCIECGSCNYICPAN 416
Cdd:TIGR01971  36 TRDPNGEEKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYEINFGRCIFCGLCEEACPTD 97
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 361-424 1.50e-06

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 45.47  E-value: 1.50e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492622923 361 TKSCISCSKCVSACPMGLeplmfdrLAANKQYDEMAEYNLMDCIECGSCNYICPanrplAEAIK 424
Cdd:COG1146    7 TDKCIGCGACVEVCPVDV-------LELDEEGKKALVINPEECIGCGACELVCP-----VGAIT 58
Fer4_9 pfam13187
4Fe-4S dicluster domain;
364-416 2.29e-06

4Fe-4S dicluster domain;


Pssm-ID: 463801 [Multi-domain]  Cd Length: 50  Bit Score: 44.47  E-value: 2.29e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 492622923  364 CISCSKCVSACPMGLeplmfDRLAANKQYDEMAEYNlMDCIECGSCNYICPAN 416
Cdd:pfam13187   2 CTGCGACVAACPAGA-----IVPDLVGQTIRGDIAG-LACIGCGACVDACPRG 48
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
356-416 3.54e-06

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 44.72  E-value: 3.54e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492622923 356 MRPYK-TKSCISCSKCVSACPMGleplmfdrlaANKQYDEMAEYNLMDCIECGSCNYICPAN 416
Cdd:COG2768    4 GKPYVdEEKCIGCGACVKVCPVG----------AISIEDGKAVIDPEKCIGCGACIEVCPVG 55
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 364-416 4.78e-06

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 43.97  E-value: 4.78e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 492622923 364 CISCSKCVSACPMG---LEPlmfdrlaanKQYDEMAEYNLMDCIECGSCNYICPAN 416
Cdd:COG1143    4 CIGCGLCVRVCPVDaitIED---------GEPGKVYVIDPDKCIGCGLCVEVCPTG 50
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
359-416 1.13e-05

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 46.59  E-value: 1.13e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 492622923 359 YKTKSCISCSKCVSACPMGLEPlmfdRLAANKQYdemaeynlmDCIECGSCNYICPAN 416
Cdd:COG0348  207 YDRGDCIDCGLCVKVCPMGIDI----RKGEINQS---------ECINCGRCIDACPKD 251
SLBB pfam10531
SLBB domain;
284-333 3.12e-05

SLBB domain;


Pssm-ID: 463136 [Multi-domain]  Cd Length: 56  Bit Score: 41.50  E-value: 3.12e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 492622923  284 IVTVSGkAIKNPKNLKIAIGTPFSYILDYCG------VDREKMERL-VMGGPMMGLA 333
Cdd:pfam10531   1 VVTVTG-EVKRPGNYEVPIGTTLSDLIELAGgftddaDLDINLRRLkRPGGPMMGIA 56
NapF COG1145
Ferredoxin [Energy production and conversion];
317-416 4.09e-05

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 44.71  E-value: 4.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 317 REKMERLVMGGPMMGLAQMTEDATVIKGTSGLLALTTEEMRPYKTKSCISCSKCVSACPMGleplmfdrlaANKQYDE-- 394
Cdd:COG1145  137 AALAEAGLAILGAAAPVDALAISGGKKIEEELKIAIKKAKAVIDAEKCIGCGLCVKVCPTG----------AIRLKDGkp 206

                         90       100
                 ....*....|....*....|..
gi 492622923 395 MAEYNLMDCIECGSCNYICPAN 416
Cdd:COG1145  207 QIVVDPDKCIGCGACVKVCPVG 228
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 356-416 7.17e-05

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 41.19  E-value: 7.17e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492622923 356 MRP-YKTKSCISCSKCVSACPMGleplmfdrlAANKQYDEMAEYNLMDCIECGSCNYICPAN 416
Cdd:COG1144   23 ERPvVDEDKCIGCGLCWIVCPDG---------AIRVDDGKYYGIDYDYCKGCGICAEVCPVK 75
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 364-416 9.37e-05

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 40.42  E-value: 9.37e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 492622923 364 CISCSKCVSACPMGleplmfdrlaANKQYDEMAEYNLMDCIECGSCNYICPAN 416
Cdd:COG2221   17 CIGCGLCVAVCPTG----------AISLDDGKLVIDEEKCIGCGACIRVCPTG 59
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 362-416 1.11e-04

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 41.61  E-value: 1.11e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 492622923 362 KSCISCSKCVSACPMG-LEplMFDRLAANKQYDEMAEYNLMDCIECGSCNYICPAN 416
Cdd:cd10549   40 DKCVFCGACVEVCPTGaIE--LTPEGKEYVPKEKEAEIDEEKCIGCGLCVKVCPVD 93
SdhB/FrdB COG0479
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and ...
 359-423 1.47e-04

Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit is part of the Pathway/BioSystem: TCA cycle


Pssm-ID: 440247 [Multi-domain]  Cd Length: 230  Bit Score: 42.81  E-value: 1.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 359 YKTKSCISCSKCVSACPMGLEPLMF---------DRLAANKQ-------YDEMA-EYNLMDCIECGSCNYICPANRPLAE 421
Cdd:COG0479  139 DDLAECILCGACVAACPNVWANPDFlgpaalaqaYRFALDPRdeeteerLEALEdEEGVWRCTTCGNCTEVCPKGIPPTK 218


                 ..
gi 492622923 422 AI 423
Cdd:COG0479  219 AI 220
PRK12387 PRK12387
formate hydrogenlyase complex iron-sulfur subunit; Provisional
 359-414 1.67e-04

formate hydrogenlyase complex iron-sulfur subunit; Provisional


Pssm-ID: 183492 [Multi-domain]  Cd Length: 180  Bit Score: 42.33  E-value: 1.67e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492622923 359 YKTKSCISCSKCVSACPMGleplmfdrlAANKQYDEMA-----EYNLMDCIECGSCNYICP 414
Cdd:PRK12387  35 YNPQQCIGCAACVNACPSN---------ALTVETDLATgelawEFNLGRCIFCGRCEEVCP 86
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
364-416 1.76e-04

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 43.86  E-value: 1.76e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 492622923 364 CISCSKCVSACPMGleplmfdrlaANKQYDEMAEYNLMDCIECGSCNYICPAN 416
Cdd:COG4624   93 CKNCYPCVRACPVK----------AIKVDDGKAEIDEEKCISCGQCVAVCPFG 135
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 364-424 2.20e-04

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 39.64  E-value: 2.20e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492622923 364 CISCSKCVSACPMGleplmfdrlaANKQYDEMAEYNLMDCIECGSCNYICPANrplaeAIK 424
Cdd:COG4231   24 CTGCGACVKVCPAD----------AIEEGDGKAVIDPDLCIGCGSCVQVCPVD-----AIK 69
DMSOR_beta_like cd16372
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 362-416 4.06e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319894 [Multi-domain]  Cd Length: 125  Bit Score: 40.01  E-value: 4.06e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 492622923 362 KSCISCSKCVSACPMGlepLMF---DRLAANKqydemaeynlmdCIECGSCNYICPAN 416
Cdd:cd16372   77 KLCVGCLMCVGFCPEG---AMFkheDYPEPFK------------CIACGICVKACPTG 119
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 364-414 4.18e-04

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 40.07  E-value: 4.18e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 492622923 364 CISCSKCVSACPmgleplmFD--RLAANKQYDEMAEYNLMDCIECGSCNYICP 414
Cdd:cd10549    8 CIGCGICVKACP-------TDaiELGPNGAIARGPEIDEDKCVFCGACVEVCP 53
Fer4_17 pfam13534
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ...
 349-378 7.52e-04

4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.


Pssm-ID: 433287 [Multi-domain]  Cd Length: 61  Bit Score: 37.44  E-value: 7.52e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 492622923  349 LALTTEEMRPYKTKSCISCSKCVSACPMGL 378
Cdd:pfam13534  31 LGDLEELQANKVANLCSECGLCEYACPMGL 60
PTZ00304 PTZ00304
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
 109-185 9.83e-04

NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional


Pssm-ID: 185547 [Multi-domain]  Cd Length: 461  Bit Score: 41.31  E-value: 9.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 109 LTKIENWeeadkkaLLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS----LILNGAECEPYLNSDNRLMLENPKSIVE 184
Cdd:PTZ00304  56 LLKGHDW-------IIDEIKKSGLRGRGGAGFPSGLKWSFMPKVKPDGrpsyLVVNADESEPGTCKDREIMRHDPHKLVE 128


                 .
gi 492622923 185 G 185
Cdd:PTZ00304 129 G 129
PRK09282 PRK09282
pyruvate carboxylase subunit B; Validated
 48-82 1.55e-03

pyruvate carboxylase subunit B; Validated


Pssm-ID: 236449 [Multi-domain]  Cd Length: 592  Bit Score: 40.98  E-value: 1.55e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 492622923  48 LVNVGDRVLKGQKIA--DAEGLAVPIHSPVSGTVTKI 82
Cdd:PRK09282 537 KVKEGDKVKAGDTVLvlEAMKMENEIQAPVDGTVKEI 573
GlpC COG0247
Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy ...
 363-416 1.56e-03

Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion];


Pssm-ID: 440017 [Multi-domain]  Cd Length: 420  Bit Score: 40.45  E-value: 1.56e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492622923 363 SCISCSKCVSACP----MGLEP--------LMFDRLAANKQYD---EMAEYnLMDCIECGSCNYICPAN 416
Cdd:COG0247   79 ACVGCGFCRAMCPsykaTGDEKdsprgrinLLREVLEGELPLDlseEVYEV-LDLCLTCKACETACPSG 146
pyruv_ox_red TIGR02176
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; This model represents a single ...
 359-425 1.63e-03

pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.


Pssm-ID: 131231 [Multi-domain]  Cd Length: 1165  Bit Score: 40.91  E-value: 1.63e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923   359 YKTKSCISCSKCVSACPMG-LEPLMFD-------------RLAANKQYDEMA---EYNLMDCIECGSCNYICPAN----- 416
Cdd:TIGR02176  680 WVPDNCIQCNQCAFVCPHAaIRPKLADeeelenapagfksLDAKGKELEGMKfriQISPLDCTGCGNCVDICPAKekalv 759

                           90
                   ....*....|
gi 492622923   417 -RPLAEAIKT 425
Cdd:TIGR02176  760 mQPLAEQREA 769
PRK12576 PRK12576
succinate dehydrogenase/fumarate reductase iron-sulfur subunit;
341-424 1.66e-03

succinate dehydrogenase/fumarate reductase iron-sulfur subunit;


Pssm-ID: 237143 [Multi-domain]  Cd Length: 279  Bit Score: 40.12  E-value: 1.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923 341 VIKGTSGLLALTTEEMRPYKTKSCISCSKCVSACP--------MGLEPLMFDRLAANKQYDEMAE---YNLMD----CIE 405
Cdd:PRK12576 131 VLEGKAEHRLKPEDQKELWKFAQCIWCGLCVSACPvvaidpefLGPAAHAKGYRFLADPRDTITEermKILIDsswrCTY 210

                         90
                 ....*....|....*....
gi 492622923 406 CGSCNYICPANRPLAEAIK 424
Cdd:PRK12576 211 CYSCSNVCPRDIEPVTAIK 229
AccB COG0511
Biotin carboxyl carrier protein [Lipid transport and metabolism]; Biotin carboxyl carrier ...
 47-82 1.83e-03

Biotin carboxyl carrier protein [Lipid transport and metabolism]; Biotin carboxyl carrier protein is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440277 [Multi-domain]  Cd Length: 136  Bit Score: 38.34  E-value: 1.83e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 492622923  47 PLVNVGDRVLKGQKIA--DAEGLAVPIHSPVSGTVTKI 82
Cdd:COG0511   81 PFVKVGDKVKAGDTLCiiEAMKMMNEIEAPVSGTVVEI 118
DMSOR_beta-like cd04410
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta ...
 352-414 1.86e-03

Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319870 [Multi-domain]  Cd Length: 136  Bit Score: 38.52  E-value: 1.86e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492622923 352 TTEEMRPYKTKSCISCS--KCVSACPMGleplmfdrlAANKQYDEMAEYNLMDCIECGSCNYICP 414
Cdd:cd04410   38 GGGLERAFLPVSCMHCEdpPCVKACPTG---------AIYKDEDGIVLIDEDKCIGCGSCVEACP 93
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 364-416 2.29e-03

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 36.63  E-value: 2.29e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 492622923 364 CISCSKCVSACPMGleplmfdrlAANKQYDEMAEYNLMDCIECGSCNYICPAN 416
Cdd:COG1149   13 CIGCGLCVEVCPEG---------AIKLDDGGAPVVDPDLCTGCGACVGVCPTG 56
ndhI CHL00014
NADH dehydrogenase subunit I
 364-417 2.66e-03

NADH dehydrogenase subunit I


Pssm-ID: 214334 [Multi-domain]  Cd Length: 167  Bit Score: 38.59  E-value: 2.66e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 492622923 364 CISCSKCVSACPMGLePLMFDRLAANKQYDEMAEYNLmD---CIECGSCNYICPANR 417
Cdd:CHL00014  61 CIACEVCVRVCPIDL-PVVDWKLETDIRKKRLLNYSI-DfgvCIFCGNCVEYCPTNC 115
COG1453 COG1453
Predicted oxidoreductase of the aldo/keto reductase family [General function prediction only];
354-414 2.82e-03

Predicted oxidoreductase of the aldo/keto reductase family [General function prediction only];


Pssm-ID: 441062 [Multi-domain]  Cd Length: 365  Bit Score: 39.80  E-value: 2.82e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492622923 354 EEMRPYKTKSCISCSKCvSACPMGLE-PLMFDRLAANKQYDE----MAEYNLM-------DCIECGSCNYICP 414
Cdd:COG1453  273 EELGELLKDFCTGCGYC-MPCPQGINiPEVFRLYNLARAYGMreyaKERYNALgpgakasACIECGACEERCP 344
glpC PRK11168
anaerobic glycerol-3-phosphate dehydrogenase subunit C;
363-423 3.04e-03

anaerobic glycerol-3-phosphate dehydrogenase subunit C;


Pssm-ID: 236869 [Multi-domain]  Cd Length: 396  Bit Score: 39.47  E-value: 3.04e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492622923 363 SCISCSKCVSACPM---------------GLEPLmfdRLAANKQYDEmaeyNLMDCIECGSCNYICPANRPLAEAI 423
Cdd:PRK11168   8 SCIKCTVCTTACPVarvnplypgpkqagpDGERL---RLKDGALYDE----SLKYCSNCKRCEVACPSGVKIGDII 76
psaC CHL00065
photosystem I subunit VII
 363-414 3.25e-03

photosystem I subunit VII


Pssm-ID: 177005 [Multi-domain]  Cd Length: 81  Bit Score: 36.28  E-value: 3.25e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 492622923 363 SCISCSKCVSACPMG-LEPLMFDRLAANkqydEMAEY-NLMDCIECGSCNYICP 414
Cdd:CHL00065  10 TCIGCTQCVRACPTDvLEMIPWDGCKAK----QIASApRTEDCVGCKRCESACP 59
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
363-425 3.67e-03

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 39.15  E-value: 3.67e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492622923 363 SCISCSKCVSACPMGleplmfdrlaANKQYDEMAEYNLMDCIECGSCNYICP--ANRPLAEAIKT 425
Cdd:PRK07118 214 GCIGCGKCVKACPAG----------AITMENNLAVIDQEKCTSCGKCVEKCPtkAIRILNKPPKV 268
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 364-424 4.49e-03

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 36.99  E-value: 4.49e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492622923 364 CISCSKCVSACPMGleplmfdrlAANKQYDEMAEYNLMDCIECGSCNYICPANrplaeAIK 424
Cdd:cd10549   80 CIGCGLCVKVCPVD---------AITLEDELEIVIDKEKCIGCGICAEVCPVN-----AIK 126
PLN00071 PLN00071
photosystem I subunit VII; Provisional
 363-416 4.58e-03

photosystem I subunit VII; Provisional


Pssm-ID: 177700 [Multi-domain]  Cd Length: 81  Bit Score: 36.08  E-value: 4.58e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 492622923 363 SCISCSKCVSACPMG-LEPLMFDRLAANKQydeMAEYNLMDCIECGSCNYICPAN 416
Cdd:PLN00071  10 TCIGCTQCVRACPTDvLEMIPWDGCKAKQI---ASAPRTEDCVGCKRCESACPTD 61
biotinyl_domain cd06850
The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all ...
 47-82 5.44e-03

The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.


Pssm-ID: 133459 [Multi-domain]  Cd Length: 67  Bit Score: 35.47  E-value: 5.44e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 492622923  47 PLVNVGDRVLKGQKIA--DAEGLAVPIHSPVSGTVTKI 82
Cdd:cd06850   13 VLVKEGDKVEAGQPLAvlEAMKMENEVTAPVAGVVKEI 50
oorD PRK09626
2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
 361-414 6.43e-03

2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed


Pssm-ID: 236597 [Multi-domain]  Cd Length: 103  Bit Score: 36.24  E-value: 6.43e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 492622923 361 TKSCISCSKCVSACPMGLEPLmfdRLAANKQYDEMAEYNLMD-CIECGSCNYICP 414
Cdd:PRK09626  15 ESRCKACDICVSVCPAGVLAM---RIDPHAVLGKMIKVVHPEsCIGCRECELHCP 66
PRK05352 PRK05352
Na(+)-translocating NADH-quinone reductase subunit A; Provisional
 24-132 7.72e-03

Na(+)-translocating NADH-quinone reductase subunit A; Provisional


Pssm-ID: 235426 [Multi-domain]  Cd Length: 448  Bit Score: 38.62  E-value: 7.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492622923  24 IEKLESPDEIFVPLLQHIGVPLNPLVNVGDRVLKGQKIA---DAEGlaVPIHSPVSGTVTKI---ESRVFpltgkvMTVF 97
Cdd:PRK05352  21 IEDGPAPKTVALLGEDYVGLRPKMKVKEGDKVKKGQPLFedkKNPG--VKFTSPASGTVVAInrgERRVL------QSVV 92

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 492622923  98 IE--NDKKEEWAELTKiENWEEADKKALLDIIREKGI 132
Cdd:PRK05352  93 IEveGDEQVTFEKYDA-KDLASLSREQVKENLLESGL 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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