NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|493725896|ref|WP_006675261|]
View 

MULTISPECIES: stage V sporulation protein SpoVM [Bacillales]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SpoVM COG5844
Stage V sporulation protein SpoVM, required for spore cortex and coat synthesis [Cell cycle ...
 1-25 9.86e-08

Stage V sporulation protein SpoVM, required for spore cortex and coat synthesis [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 444546  Cd Length: 26  Bit Score: 41.01  E-value: 9.86e-08
                        10        20
                ....*....|....*....|....*
gi 493725896  1 MKFYTFKLPKFLGGFVKAILNTFQK 25
Cdd:COG5844   1 MRFYTIKLPRFLGGIVRAILGAFKK 25
 
Name Accession Description Interval E-value
SpoVM COG5844
Stage V sporulation protein SpoVM, required for spore cortex and coat synthesis [Cell cycle ...
 1-25 9.86e-08

Stage V sporulation protein SpoVM, required for spore cortex and coat synthesis [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444546  Cd Length: 26  Bit Score: 41.01  E-value: 9.86e-08
                        10        20
                ....*....|....*....|....*
gi 493725896  1 MKFYTFKLPKFLGGFVKAILNTFQK 25
Cdd:COG5844   1 MRFYTIKLPRFLGGIVRAILGAFKK 25
SpoVM_broad NF033436
stage V sporulation protein SpoVM; Members of this family are SpoVM (stage V sporulation ...
 1-25 3.66e-05

stage V sporulation protein SpoVM; Members of this family are SpoVM (stage V sporulation protein M).


Pssm-ID: 380278  Cd Length: 26  Bit Score: 34.40  E-value: 3.66e-05
                        10        20
                ....*....|....*....|....*
gi 493725896  1 MKFYTFKLPKFLGGFVKAILNTFQK 25
Cdd:NF033436  1 MKFYTIKLPKFLSGIVRAILGIKKK 25
SpoV pfam08183
Stage V sporulation protein family; This family consists of the stage V sporulation (SpoV) ...
 1-25 1.99e-04

Stage V sporulation protein family; This family consists of the stage V sporulation (SpoV) proteins of Bacillus subtilis which includes SpoVM. SpoVM is an small, 26 residue-long protein that is produced in the mother cell chamber of the sporangium during the process of sporulation in B. subtilis. SpoVM forms an amphipathic alpha-helix and is recruited to the polar septum shortly after the sporangium undergoes asymmetric division. The function of SpoVM depends on proper subcellular localization.


Pssm-ID: 369736  Cd Length: 25  Bit Score: 32.80  E-value: 1.99e-04
                         10        20
                 ....*....|....*....|....*
gi 493725896   1 MKFYTFKLPKFLGGFVKAILNTFQK 25
Cdd:pfam08183  1 MKFYTIKLPKFLGGIVRAILGSFKK 25
spoVM PRK14741
stage V sporulation protein SpoVM;
1-25 3.50e-04

stage V sporulation protein SpoVM;


Pssm-ID: 173202  Cd Length: 26  Bit Score: 32.13  E-value: 3.50e-04
                        10        20
                ....*....|....*....|....*
gi 493725896  1 MKFYTFKLPKFLGGFVKAILNTFQK 25
Cdd:PRK14741  1 MKFYTIKLPKFLGGIVRAMLGSFKK 25
 
Name Accession Description Interval E-value
SpoVM COG5844
Stage V sporulation protein SpoVM, required for spore cortex and coat synthesis [Cell cycle ...
 1-25 9.86e-08

Stage V sporulation protein SpoVM, required for spore cortex and coat synthesis [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444546  Cd Length: 26  Bit Score: 41.01  E-value: 9.86e-08
                        10        20
                ....*....|....*....|....*
gi 493725896  1 MKFYTFKLPKFLGGFVKAILNTFQK 25
Cdd:COG5844   1 MRFYTIKLPRFLGGIVRAILGAFKK 25
SpoVM_broad NF033436
stage V sporulation protein SpoVM; Members of this family are SpoVM (stage V sporulation ...
 1-25 3.66e-05

stage V sporulation protein SpoVM; Members of this family are SpoVM (stage V sporulation protein M).


Pssm-ID: 380278  Cd Length: 26  Bit Score: 34.40  E-value: 3.66e-05
                        10        20
                ....*....|....*....|....*
gi 493725896  1 MKFYTFKLPKFLGGFVKAILNTFQK 25
Cdd:NF033436  1 MKFYTIKLPKFLSGIVRAILGIKKK 25
SpoV pfam08183
Stage V sporulation protein family; This family consists of the stage V sporulation (SpoV) ...
 1-25 1.99e-04

Stage V sporulation protein family; This family consists of the stage V sporulation (SpoV) proteins of Bacillus subtilis which includes SpoVM. SpoVM is an small, 26 residue-long protein that is produced in the mother cell chamber of the sporangium during the process of sporulation in B. subtilis. SpoVM forms an amphipathic alpha-helix and is recruited to the polar septum shortly after the sporangium undergoes asymmetric division. The function of SpoVM depends on proper subcellular localization.


Pssm-ID: 369736  Cd Length: 25  Bit Score: 32.80  E-value: 1.99e-04
                         10        20
                 ....*....|....*....|....*
gi 493725896   1 MKFYTFKLPKFLGGFVKAILNTFQK 25
Cdd:pfam08183  1 MKFYTIKLPKFLGGIVRAILGSFKK 25
spoVM PRK14741
stage V sporulation protein SpoVM;
1-25 3.50e-04

stage V sporulation protein SpoVM;


Pssm-ID: 173202  Cd Length: 26  Bit Score: 32.13  E-value: 3.50e-04
                        10        20
                ....*....|....*....|....*
gi 493725896  1 MKFYTFKLPKFLGGFVKAILNTFQK 25
Cdd:PRK14741  1 MKFYTIKLPKFLGGIVRAMLGSFKK 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH