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Conserved domains on  [gi|493793196|ref|WP_006741307|]
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flagellar hook assembly protein FlgD [Vibrio antiquarius]

Protein Classification

flagellar hook assembly protein FlgD( domain architecture ID 11484414)

flagellar hook assembly protein FlgD may act as a scaffolding protein required for flagellar hook formation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgD PRK09619
flagellar hook assembly protein FlgD;
4-227 1.75e-128

flagellar hook assembly protein FlgD;


:

Pssm-ID: 181996 [Multi-domain]  Cd Length: 218  Bit Score: 361.41  E-value: 1.75e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196   4 AQYTPLSSDAPVSTKAKENNGIAPNpkdmnsASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRT 83
Cdd:PRK09619   1 MQINESRNSANVGNQSPAPEGGLPG------AEQLNNQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  84 MQQSMILLDNMQVLSTAGLVGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTKVPLGAHGKGDVDFSIN 163
Cdd:PRK09619  75 MKSNTVLMDNMQTLATANLVGQQVMVESHEITLGEDPVAGRLTLKHPAPTLTLHITDILGQEKKIDLGKQPAGPVNFTLD 154

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493793196 164 PEELGLKPGKYSVAVEVQEGQASPNVLMAGTVEQVRIPNTGGAALVNVHGVGNVPFYQITQFGA 227
Cdd:PRK09619 155 PAALGLQPGQYQLSVVSGSGEELIPVEVAGKVNNVRISPQGGAPQLNITGLGEVPYYQITQFGA 218
 
Name Accession Description Interval E-value
flgD PRK09619
flagellar hook assembly protein FlgD;
4-227 1.75e-128

flagellar hook assembly protein FlgD;


Pssm-ID: 181996 [Multi-domain]  Cd Length: 218  Bit Score: 361.41  E-value: 1.75e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196   4 AQYTPLSSDAPVSTKAKENNGIAPNpkdmnsASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRT 83
Cdd:PRK09619   1 MQINESRNSANVGNQSPAPEGGLPG------AEQLNNQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  84 MQQSMILLDNMQVLSTAGLVGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTKVPLGAHGKGDVDFSIN 163
Cdd:PRK09619  75 MKSNTVLMDNMQTLATANLVGQQVMVESHEITLGEDPVAGRLTLKHPAPTLTLHITDILGQEKKIDLGKQPAGPVNFTLD 154

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493793196 164 PEELGLKPGKYSVAVEVQEGQASPNVLMAGTVEQVRIPNTGGAALVNVHGVGNVPFYQITQFGA 227
Cdd:PRK09619 155 PAALGLQPGQYQLSVVSGSGEELIPVEVAGKVNNVRISPQGGAPQLNITGLGEVPYYQITQFGA 218
FlgD COG1843
Flagellar hook-capping protein FlgD [Cell motility];
11-227 4.67e-48

Flagellar hook-capping protein FlgD [Cell motility];


Pssm-ID: 441448 [Multi-domain]  Cd Length: 223  Bit Score: 157.47  E-value: 4.67e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  11 SDAPVSTKAKENNGIAPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQSMIL 90
Cdd:COG1843    2 ATSSSSSVLSSLSTSSTSSSSSSSSSLGKDDFLKLLVAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIENLNTTLESLASS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  91 LDNMQVLSTAGLVGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSINPEEL-- 167
Cdd:COG1843   82 LTSSQALQASSLIGKEVLVEGNTISLDGGSASGGFELPSAADSVTVTITDANGNVVRtIDLGAQSAGVHTFTWDGTDDdg 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493793196 168 -GLKPGKYSVAVEVQEG--QASPNVLMAGTVEQVRIpnTGGAALVNVHGVGNVPFYQITQFGA 227
Cdd:COG1843  162 nALPDGTYTFSVEATDDgePVTATTLVYGKVTSVTL--SGGGPVLNLGGGGSVPLSDVTEIRD 222
FLgD_tudor pfam13861
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in ...
 94-223 1.23e-21

FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.


Pssm-ID: 433533  Cd Length: 136  Bit Score: 86.49  E-value: 1.23e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196   94 MQVLSTAGLVGQTVYVNSKEFELGE-GVQNGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSI---NPEELG 168
Cdd:pfam13861   1 SQALQAASLIGKEVLVPGDTISLSAdGGATGGVELPSAADNVTVTIYDSSGQVVRtIDLGAQAAGNVSFTWdgkDSDGNQ 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 493793196  169 LKPGKYSVAVE-VQEGQA-SPNVLMAGTVEQVRIPNTGGAALvNVHGVGNVPFYQIT 223
Cdd:pfam13861  81 LPDGTYTFSVTaTADGTSvAVTTLVYGTVDSVSLGGDGGPLL-NLGLGGTVPLSDVR 136
 
Name Accession Description Interval E-value
flgD PRK09619
flagellar hook assembly protein FlgD;
4-227 1.75e-128

flagellar hook assembly protein FlgD;


Pssm-ID: 181996 [Multi-domain]  Cd Length: 218  Bit Score: 361.41  E-value: 1.75e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196   4 AQYTPLSSDAPVSTKAKENNGIAPNpkdmnsASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRT 83
Cdd:PRK09619   1 MQINESRNSANVGNQSPAPEGGLPG------AEQLNNQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  84 MQQSMILLDNMQVLSTAGLVGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTKVPLGAHGKGDVDFSIN 163
Cdd:PRK09619  75 MKSNTVLMDNMQTLATANLVGQQVMVESHEITLGEDPVAGRLTLKHPAPTLTLHITDILGQEKKIDLGKQPAGPVNFTLD 154

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493793196 164 PEELGLKPGKYSVAVEVQEGQASPNVLMAGTVEQVRIPNTGGAALVNVHGVGNVPFYQITQFGA 227
Cdd:PRK09619 155 PAALGLQPGQYQLSVVSGSGEELIPVEVAGKVNNVRISPQGGAPQLNITGLGEVPYYQITQFGA 218
FlgD COG1843
Flagellar hook-capping protein FlgD [Cell motility];
11-227 4.67e-48

Flagellar hook-capping protein FlgD [Cell motility];


Pssm-ID: 441448 [Multi-domain]  Cd Length: 223  Bit Score: 157.47  E-value: 4.67e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  11 SDAPVSTKAKENNGIAPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQSMIL 90
Cdd:COG1843    2 ATSSSSSVLSSLSTSSTSSSSSSSSSLGKDDFLKLLVAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIENLNTTLESLASS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  91 LDNMQVLSTAGLVGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSINPEEL-- 167
Cdd:COG1843   82 LTSSQALQASSLIGKEVLVEGNTISLDGGSASGGFELPSAADSVTVTITDANGNVVRtIDLGAQSAGVHTFTWDGTDDdg 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493793196 168 -GLKPGKYSVAVEVQEG--QASPNVLMAGTVEQVRIpnTGGAALVNVHGVGNVPFYQITQFGA 227
Cdd:COG1843  162 nALPDGTYTFSVEATDDgePVTATTLVYGKVTSVTL--SGGGPVLNLGGGGSVPLSDVTEIRD 222
flgD PRK06655
flagellar hook assembly protein FlgD;
22-226 7.30e-40

flagellar hook assembly protein FlgD;


Pssm-ID: 235847 [Multi-domain]  Cd Length: 225  Bit Score: 136.61  E-value: 7.30e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  22 NNGIAPNPKDMNS---ASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQSMILLDNMQVLS 98
Cdd:PRK06655  12 TSGLSTTSSSSSSkkgAADLQDDFLTLLVAQLKNQDPLNPMDNSQMTSQLAQFSTVSGIEKLNTTLGSLSSQMTSSQALQ 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  99 TAGLVGQTVYVNSKEFELGEGVQ-NGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFS---INPEELGLKPGK 173
Cdd:PRK06655  92 ASSLVGRGVLVPGDTVLVGTGGTtPFGVELPSAADNVTVTITDSAGQVVRtIDLGAQSAGVVSFTwdgTDTDGNALPDGN 171

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 493793196 174 YSVAVE--VQEGQASPNVLMAGTVEQVRIPNTGGAALVNVHGVGnVPFYQITQFG 226
Cdd:PRK06655 172 YTIKASasVGGKQLVAQTLTYANVQSVSLGANGGGLDLNLAGTG-VTLSDVRQIL 225
FLgD_tudor pfam13861
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in ...
 94-223 1.23e-21

FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.


Pssm-ID: 433533  Cd Length: 136  Bit Score: 86.49  E-value: 1.23e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196   94 MQVLSTAGLVGQTVYVNSKEFELGE-GVQNGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSI---NPEELG 168
Cdd:pfam13861   1 SQALQAASLIGKEVLVPGDTISLSAdGGATGGVELPSAADNVTVTIYDSSGQVVRtIDLGAQAAGNVSFTWdgkDSDGNQ 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 493793196  169 LKPGKYSVAVE-VQEGQA-SPNVLMAGTVEQVRIPNTGGAALvNVHGVGNVPFYQIT 223
Cdd:pfam13861  81 LPDGTYTFSVTaTADGTSvAVTTLVYGTVDSVSLGGDGGPLL-NLGLGGTVPLSDVR 136
FlgD pfam03963
Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required ...
 13-86 6.79e-16

Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits. FlgD regulates the assembly of the hook cap structure to prevent leakage of hook monomers into the medium and hook monomer polymerization and also plays a role in determination of the correct hook length, with the help of the FliK protein. This family represents the N-terminal conserved region of FlgD. A recent crystal structure showed that this region was likely to be flexible and was cleaved off during crystallization.


Pssm-ID: 427619 [Multi-domain]  Cd Length: 75  Bit Score: 69.58  E-value: 6.79e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493793196   13 APVSTKAKENNGIAPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQ 86
Cdd:pfam03963   2 TSTNSSSTTSTSSSSSTSAKSSSTLGKDDFLKLLTTQLQNQDPLNPMDNTQFTSQLAQFSSVEQIEKLNKTLDS 75
flgD PRK12634
flagellar basal body rod modification protein; Reviewed
 24-218 1.11e-15

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 183639 [Multi-domain]  Cd Length: 221  Bit Score: 73.04  E-value: 1.11e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  24 GIAPNPKDMNSASSL-ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQSMILLDNMQVLSTAGL 102
Cdd:PRK12634  13 GLSTSSKTAKKEEALgQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDSMSSDQVLKGAAL 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196 103 VGQTVYVNSKEFELGEGVQNGKIELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSINPEELG---LKPGKYSVAV 178
Cdd:PRK12634  93 VGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGAFVKqISVPASAAGEVSFAWDGTDANgnrMAAGKYGVTA 172

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 493793196 179 EVQEGQASPNVL---MAGTVEQVRIPNTGgaALVNVHGVGNVP 218
Cdd:PRK12634 173 TQTDTAGSKSKLstyVQAPVDSVTIGSDG--LYLNLTGLGTSP 213
flgD PRK12633
flagellar basal body rod modification protein; Provisional
 33-198 2.03e-15

flagellar basal body rod modification protein; Provisional


Pssm-ID: 183638 [Multi-domain]  Cd Length: 230  Bit Score: 72.31  E-value: 2.03e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  33 NSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQSMILLDNMQVLSTAGLVGQTVYVNSK 112
Cdd:PRK12633  22 SAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGD 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196 113 EFELGEGVQNGK--------IELAHSSNQVTLVVKDEFGQSTK-VPLGAHGKGDVDFSINPEELG---LKPGKYSVAVEV 180
Cdd:PRK12633 102 KVSLGTDPNDPAqrgatpfgIDLQGDATKVTVKVLDPSGAVVRtMELGDLKTGVHTLQWDGNNDGgqpLADGKYSITVSA 181

                        170       180
                 ....*....|....*....|.
gi 493793196 181 QEGQASP---NVLMAGTVEQV 198
Cdd:PRK12633 182 SDADAKPvkaEALTYGQVKSV 202
flgD PRK06009
flagellar hook assembly protein FlgD;
11-107 3.02e-14

flagellar hook assembly protein FlgD;


Pssm-ID: 235670 [Multi-domain]  Cd Length: 140  Bit Score: 67.43  E-value: 3.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  11 SDAPVSTKAKENNGIAPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQsmiL 90
Cdd:PRK06009   7 TSATSSSTTSSTSTASNSTSAANKASVNYDSFLQLLIAQMKNQDPTDPMDATQYVSQLATFSQVEQSIQTNSKLDT---L 83

                         90
                 ....*....|....*..
gi 493793196  91 LDNMQVLSTAGLVGQTV 107
Cdd:PRK06009  84 LASSSLTQAEGLIGRTV 100
flgD PRK09618
flagellar hook assembly protein FlgD;
24-140 3.62e-14

flagellar hook assembly protein FlgD;


Pssm-ID: 236594 [Multi-domain]  Cd Length: 142  Bit Score: 66.95  E-value: 3.62e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  24 GIAPNPKDMNSASSL-ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQSMILLDnmQVLSTAGL 102
Cdd:PRK09618  13 ANSKKAERRTGNQNLgKDDFLKLLITQLQNQDPTNPMEDKEFIAQMAQFSSLEQMTNMNKSMEKLVSSSD--GLTKYSEL 90

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 493793196 103 VGQTVYVNSKEFELGEG-VQNGKielaHSSNQVTLVVKD 140
Cdd:PRK09618  91 IGKEVEWEGEDGEIVSGtVTSVK----QKDGDYPLVLDN 125
flgD PRK12813
flagellar basal body rod modification protein; Reviewed
 28-179 1.47e-11

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 237214 [Multi-domain]  Cd Length: 223  Bit Score: 61.66  E-value: 1.47e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  28 NPKDMNSASSLENeFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQS---TENMSRTMQQSMILLDNMQVlstAGLVG 104
Cdd:PRK12813  22 ASAASALTSDFET-FLRMLTTQLQNQDPLNPMDSSDYAAQLATFSGVEQqvkTNDLLTGLGASLGVMGLSQL---AGWIG 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196 105 QTVYVNSKEFELGEGVQNgKIELAHSSNQVTLVVKDEFG---QSTKVPLGA-----HGKGDvdfSINPeelgLKPGKYSV 176
Cdd:PRK12813  98 REARAEAPVWFDGTPVTI-SPNPAADADKAELVVRDAAGaevARETVPVGAgpvewAGEDA---DGNP----LPNGAYSF 169


                 ...
gi 493793196 177 AVE 179
Cdd:PRK12813 170 VVE 172
flgD PRK11911
flagellar basal body rod modification protein; Provisional
 39-140 2.13e-06

flagellar basal body rod modification protein; Provisional


Pssm-ID: 138812 [Multi-domain]  Cd Length: 140  Bit Score: 45.98  E-value: 2.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  39 ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQSMILLDNMQVLSTAGLVGQTVyvnsKEFELGE 118
Cdd:PRK11911  28 KDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNSALQSAVNFIGKDI----KGVSLNG 103

                         90       100
                 ....*....|....*....|...
gi 493793196 119 GVQNGKIE-LAHSSNQVTLVVKD 140
Cdd:PRK11911 104 EVISGKVEsVQQTTNGVMLKLKD 126
flgD PRK12812
flagellar basal body rod modification protein; Reviewed
 33-134 6.35e-06

flagellar basal body rod modification protein; Reviewed


Pssm-ID: 139245 [Multi-domain]  Cd Length: 259  Bit Score: 45.64  E-value: 6.35e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493793196  33 NSASSLENE-FISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQSMILLDNMQVLSTAGLVGQTVYVNS 111
Cdd:PRK12812  39 NPNSQLDKDaFLKLLLIELQHQDPTDPMDSDKMLTQTSQLAALEMQENTNTTMQKLVEQMQSSMSTSALSALGKMATVSD 118

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 493793196 112 KEFELG-------------EGVQNGKIELAHSSNQV 134
Cdd:PRK12812 119 NAVKLTgadelialklyfpEDSDEGTLEIYDSNNKL 154
FlgD_ig pfam13860
FlgD Ig-like domain; This domains has an immunoglobulin like beta sandwich fold. It is found ...
 112-179 4.18e-05

FlgD Ig-like domain; This domains has an immunoglobulin like beta sandwich fold. It is found in the FlgD protein the flagellar hook capping protein. THe structure for this domain shows that it is inserted within a TUDOR like beta barrel domain.


Pssm-ID: 433532 [Multi-domain]  Cd Length: 78  Bit Score: 40.79  E-value: 4.18e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493793196  112 KEFELGEGVQNGKIELAHSSN--QVTLVVKDEFGQS-TKVPLGAHGKGDVDFSI---NPEELGLKPGKYSVAVE 179
Cdd:pfam13860   1 NTISLTDGGAPGSVELTLPSPadSVTVTIYDAAGQLvRTIDLGAQSAGDVSFTWdgtDDDGNKLADGTYTFSVS 74
flgD PRK05842
flagellar hook assembly protein FlgD;
39-86 8.44e-05

flagellar hook assembly protein FlgD;


Pssm-ID: 235621 [Multi-domain]  Cd Length: 295  Bit Score: 42.67  E-value: 8.44e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 493793196  39 ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQ 86
Cdd:PRK05842  30 KNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQE 77
flgD PRK06792
flagellar basal body rod modification protein; Validated
 13-82 7.21e-04

flagellar basal body rod modification protein; Validated


Pssm-ID: 180695 [Multi-domain]  Cd Length: 190  Bit Score: 39.23  E-value: 7.21e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493793196  13 APVSTKAKENNGIAPNPKDMNSASSLE---------NEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSR 82
Cdd:PRK06792  18 AGAQTKNASVTGAQSTAQQANGVSASTqktpgimdkDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTK 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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