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Conserved domains on  [gi|494973875|ref|WP_007699900|]
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MULTISPECIES: class I ribonucleotide reductase maintenance protein YfaE [Cronobacter]

Protein Classification

ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE( domain architecture ID 10793447)

ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE is a 2Fe-2S ferredoxin involved in cofactor maintenance and assembly

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
1-84 8.98e-55

2Fe-2S ferredoxin-like protein;


:

Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 163.75  E-value: 8.98e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494973875  1 MGRITLRVTGTELSCPDEHPSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQWLTKPLAFIQEGEILPCCCKPQGDI 80
Cdd:PRK10713  1 MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDI 80


                ....
gi 494973875 81 EIEM 84
Cdd:PRK10713 81 EIEM 84
 
Name Accession Description Interval E-value
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
1-84 8.98e-55

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 163.75  E-value: 8.98e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494973875  1 MGRITLRVTGTELSCPDEHPSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQWLTKPLAFIQEGEILPCCCKPQGDI 80
Cdd:PRK10713  1 MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDI 80


                ....
gi 494973875 81 EIEM 84
Cdd:PRK10713 81 EIEM 84
Fdx COG0633
Ferredoxin [Energy production and conversion];
1-84 2.77e-15

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 64.10  E-value: 2.77e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494973875  1 MGRITLRVTGTELSCPDEHpSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQV-----QWLTKPLafIQEGEILPCCCK 75
Cdd:COG0633   1 MPKVTFIPEGHTVEVPAGE-SLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVdhreeDALSDEE--RAAGSRLACQAR 77


                ....*....
gi 494973875 76 PQGDIEIEM 84
Cdd:COG0633  78 PTSDLVVEL 86
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 3-83 2.22e-13

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 59.33  E-value: 2.22e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494973875  3 RITLRVTGTELSCPdEHPSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQWLTKPLAF---IQEGEILPCCCKPQGD 79
Cdd:cd00207   2 TINVPGSGVEVEVP-EGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDeeeAEGGYVLACQTRVTDG 80


                ....
gi 494973875 80 IEIE 83
Cdd:cd00207  81 LVIE 84
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
4-77 4.13e-09

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 48.29  E-value: 4.13e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 494973875   4 ITLRVTGTELSCPDEHPSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQ---WLTKPLAFIQEGEILPCCCKPQ 77
Cdd:pfam00111  1 VTINGKGVTIEVPDGETTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDQsdqSFLEDDELAAGYVVLACQTYPK 77
 
Name Accession Description Interval E-value
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
1-84 8.98e-55

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 163.75  E-value: 8.98e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494973875  1 MGRITLRVTGTELSCPDEHPSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQWLTKPLAFIQEGEILPCCCKPQGDI 80
Cdd:PRK10713  1 MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDI 80


                ....
gi 494973875 81 EIEM 84
Cdd:PRK10713 81 EIEM 84
Fdx COG0633
Ferredoxin [Energy production and conversion];
1-84 2.77e-15

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 64.10  E-value: 2.77e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494973875  1 MGRITLRVTGTELSCPDEHpSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQV-----QWLTKPLafIQEGEILPCCCK 75
Cdd:COG0633   1 MPKVTFIPEGHTVEVPAGE-SLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVdhreeDALSDEE--RAAGSRLACQAR 77


                ....*....
gi 494973875 76 PQGDIEIEM 84
Cdd:COG0633  78 PTSDLVVEL 86
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
 3-83 1.71e-13

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 63.35  E-value: 1.71e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494973875   3 RITLRVTGTELSC-PDEhpSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQWLTKPLAFI-----QEGEILPCCCKP 76
Cdd:PRK07609   4 QVTLQPSGRQFTAePDE--TILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALsgeerAAGEALTCCAKP 81


                 ....*..
gi 494973875  77 QGDIEIE 83
Cdd:PRK07609  82 LSDLVLE 88
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 3-83 2.22e-13

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 59.33  E-value: 2.22e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494973875  3 RITLRVTGTELSCPdEHPSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQWLTKPLAF---IQEGEILPCCCKPQGD 79
Cdd:cd00207   2 TINVPGSGVEVEVP-EGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDeeeAEGGYVLACQTRVTDG 80


                ....
gi 494973875 80 IEIE 83
Cdd:cd00207  81 LVIE 84
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
 21-83 4.76e-12

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 59.34  E-value: 4.76e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 494973875  21 SLLVALESHAVTVEYQCREGYCGSCRCKLVAGQ---VQWLTKPLAFIQEGEILPCCCKPQGDIEIE 83
Cdd:PRK10684 267 TLLEALESNKVPVVAACRAGVCGCCKTKVVSGEytvSSTMTLTPAEIAQGYVLACSCHPQGDLVLA 332
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
4-77 4.13e-09

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 48.29  E-value: 4.13e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 494973875   4 ITLRVTGTELSCPDEHPSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQ---WLTKPLAFIQEGEILPCCCKPQ 77
Cdd:pfam00111  1 VTINGKGVTIEVPDGETTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDQsdqSFLEDDELAAGYVVLACQTYPK 77
PTZ00038 PTZ00038
ferredoxin; Provisional
 3-83 1.14e-06

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 43.67  E-value: 1.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494973875   3 RITLRVTGTE--LSCpDEHPSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQ-----WLTKplAFIQEGEILPCCCK 75
Cdd:PTZ00038  97 NITLQTPDGEkvIEC-DEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDnedqsYLDD--EQLKKGYCLLCTCY 173


                 ....*...
gi 494973875  76 PQGDIEIE 83
Cdd:PTZ00038 174 PKSDCTIE 181
COG3894 COG3894
Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain ...
 1-83 1.94e-06

Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain [Function unknown];


Pssm-ID: 443101 [Multi-domain]  Cd Length: 621  Bit Score: 43.64  E-value: 1.94e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494973875   1 MGRITLRVTGTELSCP-DEHPSLLVALESHAVTVEYQCR-EGYCGSCRCKLVAGQV-QWLTKPLAFIQEGEI-----LPC 72
Cdd:COG3894    1 MPKVKVTFLPSGKRVEvEAGTTLLDAAREAGVDIDAPCGgRGTCGKCKVKVEEGEFsPVTEEERRLLSPEELaegyrLAC 80

                         90
                 ....*....|.
gi 494973875  73 CCKPQGDIEIE 83
Cdd:COG3894   81 QARVLGDLVVE 91
PLN03136 PLN03136
Ferredoxin; Provisional
 12-83 2.27e-06

Ferredoxin; Provisional


Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 42.43  E-value: 2.27e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 494973875  12 ELSCpDEHPSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQWLTKPL---AFIQEGEILPCCCKPQGDIEIE 83
Cdd:PLN03136  67 EVEC-EEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFlddEQISEGYVLTCVAYPTSDVVIE 140
petF CHL00134
ferredoxin; Validated
 11-82 1.01e-04

ferredoxin; Validated


Pssm-ID: 177056 [Multi-domain]  Cd Length: 99  Bit Score: 37.39  E-value: 1.01e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 494973875 11 TELSCPDEHpSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQWLTKPL---AFIQEGEILPCCCKPQGDIEI 82
Cdd:CHL00134 17 VTIDCPDDV-YILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFlddDQLEAGFVLTCVAYPTSDCTI 90
PRK05713 PRK05713
iron-sulfur-binding ferredoxin reductase;
6-83 3.56e-04

iron-sulfur-binding ferredoxin reductase;


Pssm-ID: 235575 [Multi-domain]  Cd Length: 312  Bit Score: 37.01  E-value: 3.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494973875   6 LRVTGTELSCPDEhPSLLVALESHAVTVEYQCREGYCGSCRCKLVAGQVQwLTKPLAFI----QEGEILPCCCKPQGDIE 81
Cdd:PRK05713   4 LRVGERRWSVPAG-SNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPE-DALPEALAaekrEQGWRLACQCRVVGDLR 81


                 ..
gi 494973875  82 IE 83
Cdd:PRK05713  82 VE 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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