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Conserved domains on  [gi|496337113|ref|WP_009046291|]
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MULTISPECIES: ABC-type transport auxiliary lipoprotein family protein [Pseudomonas]

Protein Classification

PqiC family protein; membrane integrity-associated transporter subunit PqiC; membrane integrity-associated transporter subunit PqiC( domain architecture ID 10007093)

PqiC family protein similar to Escherichia coli membrane integrity-associated transporter subunit PqiC, which is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity; membrane integrity-associated transporter subunit PqiC is a component of a transport pathway that contributes to membrane integrity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 6-205 4.22e-56

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


:

Pssm-ID: 442451  Cd Length: 202  Bit Score: 176.73  E-value: 4.22e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496337113   6 RPFGRLALAAGFALS-GACSILPQADPVDIYRLPTAqsAAAQPQGHTQPWSLRLTKPLASDALNSARIAVIPQGDVISSY 84
Cdd:COG3218    4 RRLLRLLLLLLLALLlAGCSSLPAPPPPTLYDLTPP--LPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496337113  85 KDARWSDPAPVLLRNRLLDGFLADGRVQLLGTDDSDVQTDLELGGNLQAFQSEYQGKAVAVVIRLDARLVRGYDQKILAS 164
Cdd:COG3218   82 AGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRVVAS 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 496337113 165 QRFEVRQPLNDTKVPAVVAGFGQAGDTLNRQVVEWTVKQGS 205
Cdd:COG3218  162 RRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQLA 202
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 6-205 4.22e-56

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 176.73  E-value: 4.22e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496337113   6 RPFGRLALAAGFALS-GACSILPQADPVDIYRLPTAqsAAAQPQGHTQPWSLRLTKPLASDALNSARIAVIPQGDVISSY 84
Cdd:COG3218    4 RRLLRLLLLLLLALLlAGCSSLPAPPPPTLYDLTPP--LPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496337113  85 KDARWSDPAPVLLRNRLLDGFLADGRVQLLGTDDSDVQTDLELGGNLQAFQSEYQGKAVAVVIRLDARLVRGYDQKILAS 164
Cdd:COG3218   82 AGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRVVAS 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 496337113 165 QRFEVRQPLNDTKVPAVVAGFGQAGDTLNRQVVEWTVKQGS 205
Cdd:COG3218  162 RRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQLA 202
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 43-196 1.71e-15

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 70.43  E-value: 1.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496337113   43 AAAQPQGHTQPWSLRLTKPLASDALNSARIAVIPQGDVISSYKDARWSDPAPVLLRNRLLDGF---LADGRVQLLGTDDS 119
Cdd:pfam03886   3 PAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLsrrLPSRRVAAFPWPLG 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 496337113  120 DvQTDLELGGNLQAFQSEYQGKAvavVIRLDARLVRGYDQKILASQRFEVRQPLNDTKVPAVVAGFGQAGDTLNRQV 196
Cdd:pfam03886  83 G-TPDYRLQVDVRRFDGRPGGNA---VLEARWTLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQI 155
 
Name Accession Description Interval E-value
COG3218 COG3218
ABC-type uncharacterized transport system, auxiliary component [General function prediction ...
 6-205 4.22e-56

ABC-type uncharacterized transport system, auxiliary component [General function prediction only];


Pssm-ID: 442451  Cd Length: 202  Bit Score: 176.73  E-value: 4.22e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496337113   6 RPFGRLALAAGFALS-GACSILPQADPVDIYRLPTAqsAAAQPQGHTQPWSLRLTKPLASDALNSARIAVIPQGDVISSY 84
Cdd:COG3218    4 RRLLRLLLLLLLALLlAGCSSLPAPPPPTLYDLTPP--LPAAAAAGPLPAQLLVAEPTAPGALDSDRIVVRPDPGQLQYY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496337113  85 KDARWSDPAPVLLRNRLLDGFLADGRVQLLGTDDSDVQTDLELGGNLQAFQSEYQGKAVAVVIRLDARLVRGYDQKILAS 164
Cdd:COG3218   82 AGARWADPPPRLLQDLLVEALEASGRFRAVGRPGSGLAADYRLEGELRDFEQDFDGGAPRAVVELRARLVDDRDGRVVAS 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 496337113 165 QRFEVRQPLNDTKVPAVVAGFGQAGDTLNRQVVEWTVKQGS 205
Cdd:COG3218  162 RRFEARVPAASADAAGVVAALNQALDQLLAEIVAWLAAQLA 202
ABC_trans_aux pfam03886
ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial ...
 43-196 1.71e-15

ABC-type transport auxiliary lipoprotein component; ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.


Pssm-ID: 427568  Cd Length: 155  Bit Score: 70.43  E-value: 1.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496337113   43 AAAQPQGHTQPWSLRLTKPLASDALNSARIAVIPQGDVISSYKDARWSDPAPVLLRNRLLDGF---LADGRVQLLGTDDS 119
Cdd:pfam03886   3 PAATPAASSPQPQLEVGPVSLPDYLDRPQIVVRTGDGQLQLAENARWAEPLDDQITRALAADLsrrLPSRRVAAFPWPLG 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 496337113  120 DvQTDLELGGNLQAFQSEYQGKAvavVIRLDARLVRGYDQKILASQRFEVRQPLNDTKVPAVVAGFGQAGDTLNRQV 196
Cdd:pfam03886  83 G-TPDYRLQVDVRRFDGRPGGNA---VLEARWTLLDAGGGRVLTSRSFRISEPVAGDGYAALVAALSQALAQLAAQI 155
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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