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Conserved domains on  [gi|496341872|ref|WP_009051050|]
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MULTISPECIES: YceK/YidQ family lipoprotein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1375 super family cl11456
Protein of unknown function (DUF1375); This family consists of several hypothetical, putative ...
 15-70 9.72e-10

Protein of unknown function (DUF1375); This family consists of several hypothetical, putative lipoproteins of around 80 residues in length. Members of this family seem to be specific to the Class Gammaproteobacteria. The function of this family is unknown.


The actual alignment was detected with superfamily member COG5645:

Pssm-ID: 472188  Cd Length: 100  Bit Score: 50.78  E-value: 9.72e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 496341872  15 GGCATARTLNAAKPGapvVYSGTRLDLYVMQGgccpmDRFGAEAPSYPGVDLPASA 70
Cdd:COG5645   19 SGCSSVMTHTGPKEG---YYPGTRADVEMLKD-----DDTGWGMKPLLALDLPFSA 66
 
Name Accession Description Interval E-value
YceK COG5645
Uncharacterized conserved protein YceK [Function unknown];
15-70 9.72e-10

Uncharacterized conserved protein YceK [Function unknown];


Pssm-ID: 444368  Cd Length: 100  Bit Score: 50.78  E-value: 9.72e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 496341872  15 GGCATARTLNAAKPGapvVYSGTRLDLYVMQGgccpmDRFGAEAPSYPGVDLPASA 70
Cdd:COG5645   19 SGCSSVMTHTGPKEG---YYPGTRADVEMLKD-----DDTGWGMKPLLALDLPFSA 66
DUF1375 pfam07119
Protein of unknown function (DUF1375); This family consists of several hypothetical, putative ...
 31-70 2.30e-06

Protein of unknown function (DUF1375); This family consists of several hypothetical, putative lipoproteins of around 80 residues in length. Members of this family seem to be specific to the Class Gammaproteobacteria. The function of this family is unknown.


Pssm-ID: 429301  Cd Length: 53  Bit Score: 40.80  E-value: 2.30e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 496341872  31 PVVYSGTRLDLYVMQ--GGCCPMDRFGAEAPSYPGVDLPASA 70
Cdd:pfam07119  1 PRVYSGTRLDVCRLSggGAYPVAGWVSIALPPLLVVDLPVSL 42
 
Name Accession Description Interval E-value
YceK COG5645
Uncharacterized conserved protein YceK [Function unknown];
15-70 9.72e-10

Uncharacterized conserved protein YceK [Function unknown];


Pssm-ID: 444368  Cd Length: 100  Bit Score: 50.78  E-value: 9.72e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 496341872  15 GGCATARTLNAAKPGapvVYSGTRLDLYVMQGgccpmDRFGAEAPSYPGVDLPASA 70
Cdd:COG5645   19 SGCSSVMTHTGPKEG---YYPGTRADVEMLKD-----DDTGWGMKPLLALDLPFSA 66
DUF1375 pfam07119
Protein of unknown function (DUF1375); This family consists of several hypothetical, putative ...
 31-70 2.30e-06

Protein of unknown function (DUF1375); This family consists of several hypothetical, putative lipoproteins of around 80 residues in length. Members of this family seem to be specific to the Class Gammaproteobacteria. The function of this family is unknown.


Pssm-ID: 429301  Cd Length: 53  Bit Score: 40.80  E-value: 2.30e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 496341872  31 PVVYSGTRLDLYVMQ--GGCCPMDRFGAEAPSYPGVDLPASA 70
Cdd:pfam07119  1 PRVYSGTRLDVCRLSggGAYPVAGWVSIALPPLLVVDLPVSL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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