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Conserved domains on  [gi|497374717|ref|WP_009688930|]
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MULTISPECIES: entericidin A/B family lipoprotein [Burkholderia]

Protein Classification

COG5510 family protein( domain architecture ID 10009370)

COG5510 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5510 COG5510
Predicted small secreted protein [Function unknown];
1-44 1.86e-11

Predicted small secreted protein [Function unknown];


:

Pssm-ID: 444261  Cd Length: 45  Bit Score: 51.39  E-value: 1.86e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 497374717  1 MTRTIA-AMLLVVTAALAGCNTVAGMGQDISKGGQAISDTAEKAK 44
Cdd:COG5510   1 MKKLILlLLLLLLALLLAGCNTVKGAGEDIESGGEAIEDAAEKVQ 45
 
Name Accession Description Interval E-value
COG5510 COG5510
Predicted small secreted protein [Function unknown];
1-44 1.86e-11

Predicted small secreted protein [Function unknown];


Pssm-ID: 444261  Cd Length: 45  Bit Score: 51.39  E-value: 1.86e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 497374717  1 MTRTIA-AMLLVVTAALAGCNTVAGMGQDISKGGQAISDTAEKAK 44
Cdd:COG5510   1 MKKLILlLLLLLLALLLAGCNTVKGAGEDIESGGEAIEDAAEKVQ 45
Entericidin pfam08085
Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. ...
 21-40 3.52e-05

Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.


Pssm-ID: 429826  Cd Length: 20  Bit Score: 35.35  E-value: 3.52e-05
                         10        20
                 ....*....|....*....|
gi 497374717  21 TVAGMGQDISKGGQAISDTA 40
Cdd:pfam08085  1 TVEGAGQDIQAGGEAIEDAA 20
PRK10081 PRK10081
lipoprotein toxin entericidin B;
3-44 1.38e-04

lipoprotein toxin entericidin B;


Pssm-ID: 170240  Cd Length: 48  Bit Score: 34.28  E-value: 1.38e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 497374717  3 RTIAAML--LVVTAALAGCNTVAGMGQDISKGGQAISDTAEKAK 44
Cdd:PRK10081  4 KTIAAIFsvLVLSTVLTACNTTRGVGEDISDGGNAISGAATKAQ 47
 
Name Accession Description Interval E-value
COG5510 COG5510
Predicted small secreted protein [Function unknown];
1-44 1.86e-11

Predicted small secreted protein [Function unknown];


Pssm-ID: 444261  Cd Length: 45  Bit Score: 51.39  E-value: 1.86e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 497374717  1 MTRTIA-AMLLVVTAALAGCNTVAGMGQDISKGGQAISDTAEKAK 44
Cdd:COG5510   1 MKKLILlLLLLLLALLLAGCNTVKGAGEDIESGGEAIEDAAEKVQ 45
Entericidin pfam08085
Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. ...
 21-40 3.52e-05

Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.


Pssm-ID: 429826  Cd Length: 20  Bit Score: 35.35  E-value: 3.52e-05
                         10        20
                 ....*....|....*....|
gi 497374717  21 TVAGMGQDISKGGQAISDTA 40
Cdd:pfam08085  1 TVEGAGQDIQAGGEAIEDAA 20
PRK10081 PRK10081
lipoprotein toxin entericidin B;
3-44 1.38e-04

lipoprotein toxin entericidin B;


Pssm-ID: 170240  Cd Length: 48  Bit Score: 34.28  E-value: 1.38e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 497374717  3 RTIAAML--LVVTAALAGCNTVAGMGQDISKGGQAISDTAEKAK 44
Cdd:PRK10081  4 KTIAAIFsvLVLSTVLTACNTTRGVGEDISDGGNAISGAATKAQ 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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