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Conserved domains on  [gi|498116059|ref|WP_010430215|]
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MULTISPECIES: biofilm development regulator YmgB/AriR family protein [Enterobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YmgB super family cl12389
Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has ...
 33-91 5.00e-19

Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).


The actual alignment was detected with superfamily member pfam10798:

Pssm-ID: 472312  Cd Length: 59  Bit Score: 73.08  E-value: 5.00e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 498116059  33 EESAVFSTAVRCVLASEGHLTNKAIILWLIQTLEATDDVVQADVIRKTLEIVVGYTMDD 91
Cdd:pfam10798  1 SEMEILGLIVREILASGMRVSNKAIILKLIHKLESESDVVQLDIYRNALELVVGKTPDD 59
 
Name Accession Description Interval E-value
YmgB pfam10798
Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has ...
 33-91 5.00e-19

Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).


Pssm-ID: 431503  Cd Length: 59  Bit Score: 73.08  E-value: 5.00e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 498116059  33 EESAVFSTAVRCVLASEGHLTNKAIILWLIQTLEATDDVVQADVIRKTLEIVVGYTMDD 91
Cdd:pfam10798  1 SEMEILGLIVREILASGMRVSNKAIILKLIHKLESESDVVQLDIYRNALELVVGKTPDD 59
 
Name Accession Description Interval E-value
YmgB pfam10798
Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has ...
 33-91 5.00e-19

Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).


Pssm-ID: 431503  Cd Length: 59  Bit Score: 73.08  E-value: 5.00e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 498116059  33 EESAVFSTAVRCVLASEGHLTNKAIILWLIQTLEATDDVVQADVIRKTLEIVVGYTMDD 91
Cdd:pfam10798  1 SEMEILGLIVREILASGMRVSNKAIILKLIHKLESESDVVQLDIYRNALELVVGKTPDD 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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