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Conserved domains on  [gi|498122404|ref|WP_010436560|]
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MULTISPECIES: phosphoribosylglycinamide formyltransferase [Vibrio]

Protein Classification

phosphoribosylglycinamide formyltransferase( domain architecture ID 10001018)

phosphoribosylglycinamide formyltransferase catalyzes the transfer of a formyl group from lO-formyltetrahydrofolate to glycinamide ribonucleotide

CATH:  3.40.50.170
EC:  2.1.2.2
Gene Symbol:  purN
Gene Ontology:  GO:0006974|GO:0004644|GO:0006189
SCOP:  4000065

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PurN COG0299
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
13-213 1.09e-121

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


:

Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 343.55  E-value: 1.09e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  13 KKNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNFGSREEFDHELMVQIDAYQ 92
Cdd:COG0299    1 MKRIAVLISGRGSNLQALIDAIEAGDLPAEIVLVISNRPDAYGLERARAAGIPTFVLDHKDFPSREAFDAALLEALDAYG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  93 PDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFED 172
Cdd:COG0299   81 PDLVVLAGFMRILTPEFVRAFPGRIINIHPSLLPAFPGLHAHRQALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPD 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 498122404 173 DDADMLASRVLTQEHCIYPMVCKWFAEDRLLMVNGQAILDG 213
Cdd:COG0299  161 DTEETLAARILEQEHRLYPEAIRLLAEGRLTLDGRRVRLDG 201
 
Name Accession Description Interval E-value
PurN COG0299
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
13-213 1.09e-121

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 343.55  E-value: 1.09e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  13 KKNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNFGSREEFDHELMVQIDAYQ 92
Cdd:COG0299    1 MKRIAVLISGRGSNLQALIDAIEAGDLPAEIVLVISNRPDAYGLERARAAGIPTFVLDHKDFPSREAFDAALLEALDAYG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  93 PDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFED 172
Cdd:COG0299   81 PDLVVLAGFMRILTPEFVRAFPGRIINIHPSLLPAFPGLHAHRQALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPD 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 498122404 173 DDADMLASRVLTQEHCIYPMVCKWFAEDRLLMVNGQAILDG 213
Cdd:COG0299  161 DTEETLAARILEQEHRLYPEAIRLLAEGRLTLDGRRVRLDG 201
FMT_core_GART cd08645
Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); ...
15-197 1.85e-101

Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.


Pssm-ID: 187714 [Multi-domain]  Cd Length: 183  Bit Score: 291.60  E-value: 1.85e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  15 NIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNFGSREEFDHELMVQIDAYQPD 94
Cdd:cd08645    1 RIAVLASGSGSNLQALIDAIKSGKLNAEIVLVISNNPDAYGLERAKKAGIPTFVINRKDFPSREEFDEALLELLKEYKVD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  95 LIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFEDDD 174
Cdd:cd08645   81 LIVLAGFMRILSPEFLEAFPGRIINIHPSLLPKFYGLHAHEAALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPGDT 160
                        170       180
                 ....*....|....*....|...
gi 498122404 175 ADMLASRVLTQEHCIYPMVCKWF 197
Cdd:cd08645  161 PETLAERIHALEHRLYPEAIKLL 183
PurN TIGR00639
phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model ...
14-203 2.82e-96

phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 161973 [Multi-domain]  Cd Length: 190  Bit Score: 278.87  E-value: 2.82e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   14 KNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNFGSREEFDHELMVQIDAYQP 93
Cdd:TIGR00639   1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   94 DLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFEDD 173
Cdd:TIGR00639  81 DLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPED 160
                         170       180       190
                  ....*....|....*....|....*....|
gi 498122404  174 DADMLASRVLTQEHCIYPMVCKWFAEDRLL 203
Cdd:TIGR00639 161 TEETLEQRIHKQEHRIYPLAIAWFAQGRLK 190
Formyl_trans_N pfam00551
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ...
14-193 5.20e-78

Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.


Pssm-ID: 395436 [Multi-domain]  Cd Length: 181  Bit Score: 232.18  E-value: 5.20e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   14 KNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNFGSREEFDHELMVQIDAYQP 93
Cdd:pfam00551   1 MKIAVLISGTGSNLQALIDALRKGGQDADVVLVISNKDKAAGLGRAEQAGIPTFVFEHKGLTPRSLFDQELADALRALAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   94 DLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFEDD 173
Cdd:pfam00551  81 DVIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPILPDD 160
                         170       180
                  ....*....|....*....|
gi 498122404  174 DADMLASRVLTQEHCIYPMV 193
Cdd:pfam00551 161 TAETLYNRVADLEHKALPRV 180
PLN02331 PLN02331
phosphoribosylglycinamide formyltransferase
15-202 4.10e-45

phosphoribosylglycinamide formyltransferase


Pssm-ID: 177965 [Multi-domain]  Cd Length: 207  Bit Score: 149.46  E-value: 4.10e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  15 NIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNFGSREEFDHELMVQIDAYQPD 94
Cdd:PLN02331   1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  95 LIVLAGYMRILSSEFVRHYAGKMINIHPSLLPK-----YPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPV 169
Cdd:PLN02331  81 FVLLAGYLKLIPVELVRAYPRSILNIHPALLPAfggkgYYGIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRVVPV 160
                        170       180       190
                 ....*....|....*....|....*....|...
gi 498122404 170 FEDDDADMLASRVLTQEHCIYPMVCKWFAEDRL 202
Cdd:PLN02331 161 LATDTPEELAARVLHEEHQLYVEVVAALCEERI 193
 
Name Accession Description Interval E-value
PurN COG0299
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
13-213 1.09e-121

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 343.55  E-value: 1.09e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  13 KKNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNFGSREEFDHELMVQIDAYQ 92
Cdd:COG0299    1 MKRIAVLISGRGSNLQALIDAIEAGDLPAEIVLVISNRPDAYGLERARAAGIPTFVLDHKDFPSREAFDAALLEALDAYG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  93 PDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFED 172
Cdd:COG0299   81 PDLVVLAGFMRILTPEFVRAFPGRIINIHPSLLPAFPGLHAHRQALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPD 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 498122404 173 DDADMLASRVLTQEHCIYPMVCKWFAEDRLLMVNGQAILDG 213
Cdd:COG0299  161 DTEETLAARILEQEHRLYPEAIRLLAEGRLTLDGRRVRLDG 201
FMT_core_GART cd08645
Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); ...
15-197 1.85e-101

Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.


Pssm-ID: 187714 [Multi-domain]  Cd Length: 183  Bit Score: 291.60  E-value: 1.85e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  15 NIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNFGSREEFDHELMVQIDAYQPD 94
Cdd:cd08645    1 RIAVLASGSGSNLQALIDAIKSGKLNAEIVLVISNNPDAYGLERAKKAGIPTFVINRKDFPSREEFDEALLELLKEYKVD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  95 LIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFEDDD 174
Cdd:cd08645   81 LIVLAGFMRILSPEFLEAFPGRIINIHPSLLPKFYGLHAHEAALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPGDT 160
                        170       180
                 ....*....|....*....|...
gi 498122404 175 ADMLASRVLTQEHCIYPMVCKWF 197
Cdd:cd08645  161 PETLAERIHALEHRLYPEAIKLL 183
PurN TIGR00639
phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model ...
14-203 2.82e-96

phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 161973 [Multi-domain]  Cd Length: 190  Bit Score: 278.87  E-value: 2.82e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   14 KNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNFGSREEFDHELMVQIDAYQP 93
Cdd:TIGR00639   1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   94 DLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFEDD 173
Cdd:TIGR00639  81 DLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPED 160
                         170       180       190
                  ....*....|....*....|....*....|
gi 498122404  174 DADMLASRVLTQEHCIYPMVCKWFAEDRLL 203
Cdd:TIGR00639 161 TEETLEQRIHKQEHRIYPLAIAWFAQGRLK 190
Formyl_trans_N pfam00551
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ...
14-193 5.20e-78

Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.


Pssm-ID: 395436 [Multi-domain]  Cd Length: 181  Bit Score: 232.18  E-value: 5.20e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   14 KNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNFGSREEFDHELMVQIDAYQP 93
Cdd:pfam00551   1 MKIAVLISGTGSNLQALIDALRKGGQDADVVLVISNKDKAAGLGRAEQAGIPTFVFEHKGLTPRSLFDQELADALRALAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   94 DLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFEDD 173
Cdd:pfam00551  81 DVIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPILPDD 160
                         170       180
                  ....*....|....*....|
gi 498122404  174 DADMLASRVLTQEHCIYPMV 193
Cdd:pfam00551 161 TAETLYNRVADLEHKALPRV 180
PLN02331 PLN02331
phosphoribosylglycinamide formyltransferase
15-202 4.10e-45

phosphoribosylglycinamide formyltransferase


Pssm-ID: 177965 [Multi-domain]  Cd Length: 207  Bit Score: 149.46  E-value: 4.10e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  15 NIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNFGSREEFDHELMVQIDAYQPD 94
Cdd:PLN02331   1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  95 LIVLAGYMRILSSEFVRHYAGKMINIHPSLLPK-----YPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPV 169
Cdd:PLN02331  81 FVLLAGYLKLIPVELVRAYPRSILNIHPALLPAfggkgYYGIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRVVPV 160
                        170       180       190
                 ....*....|....*....|....*....|...
gi 498122404 170 FEDDDADMLASRVLTQEHCIYPMVCKWFAEDRL 202
Cdd:PLN02331 161 LATDTPEELAARVLHEEHQLYVEVVAALCEERI 193
FMT_core cd08369
Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The ...
18-189 5.33e-41

Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The proteins of this superfamily contain a formyltransferase domain that hydrolyzes the removal of a formyl group from its substrate as part of a multistep transfer mechanism, and this alignment model represents the catalytic core of the formyltransferase domain. This family includes the following known members; Glycinamide Ribonucleotide Transformylase (GART), Formyl-FH4 Hydrolase, Methionyl-tRNA Formyltransferase, ArnA, and 10-Formyltetrahydrofolate Dehydrogenase (FDH). Glycinamide Ribonucleotide Transformylase (GART) catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Methionyl-tRNA Formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA, which plays important role in translation initiation. ArnA is required for the modification of lipid A with 4-amino-4-deoxy-l-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. 10-formyltetrahydrofolate dehydrogenase (FDH) catalyzes the conversion of 10-formyltetrahydrofolate, a precursor for nucleotide biosynthesis, to tetrahydrofolate. Members of this family are multidomain proteins. The formyltransferase domain is located at the N-terminus of FDH, Methionyl-tRNA Formyltransferase and ArnA, and at the C-terminus of Formyl-FH4 Hydrolase. Prokaryotic Glycinamide Ribonucleotide Transformylase (GART) is a single domain protein while eukaryotic GART is a trifunctional protein that catalyzes the second, third and fifth steps in de novo purine biosynthesis.


Pssm-ID: 187712 [Multi-domain]  Cd Length: 173  Bit Score: 137.80  E-value: 5.33e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  18 VLVSGSGSNLQAILDA-CDNNMIDasVKAVFSNKAEAFGLERAKAAGVNAHSVNPKNfGSREEFDHELMvqidAYQPDLI 96
Cdd:cd08369    1 IVILGSGNIGQRVLKAlLSKEGHE--IVGVVTHPDSPRGTAQLSLELVGGKVYLDSN-INTPELLELLK----EFAPDLI 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  97 VLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFEDDDAD 176
Cdd:cd08369   74 VSINFRQIIPPEILKLPPGGAINIHPSLLPRYRGVNPLAWAIINGEKETGVTVHYMDEGIDTGDIIAQEVIPISPDDTAG 153
                        170
                 ....*....|...
gi 498122404 177 MLASRVLTQEHCI 189
Cdd:cd08369  154 TLYQRLIELGPKL 166
PurU COG0788
Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate ...
10-207 9.86e-38

Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate hydrolase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440551 [Multi-domain]  Cd Length: 282  Bit Score: 132.48  E-value: 9.86e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  10 SHSKKNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLerAKAAGVNAHSVnPKNFGSREEFDHELMVQID 89
Cdd:COG0788   83 SDRRKRVAILVSKEDHCLNDLLYRWRSGELPAEIPAVISNHPDLRPL--AEWFGIPFHHI-PVTKETKAEAEARLLELLE 159
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  90 AYQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAidaqdKEHG------TSvHFVTEELDGGPVIL 163
Cdd:COG0788  160 EYDIDLVVLARYMQILSPDFCARLPGRIINIHHSFLPAFKGAKPYHQA-----YERGvkligaTA-HYVTADLDEGPIIE 233
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 498122404 164 QAKVPVFEDDDADMLA-------SRVLTQEhciypmVcKWFAEDRLLmVNG 207
Cdd:COG0788  234 QDVERVDHRDTPEDLVrkgrdveKRVLARA------V-RWHLEDRVL-VNG 276
PurU TIGR00655
formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. ...
10-210 7.22e-34

formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273199 [Multi-domain]  Cd Length: 280  Bit Score: 122.54  E-value: 7.22e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   10 SHSKKNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLerAKAAGVNAHSVnPKNFGSREEFDHELMVQID 89
Cdd:TIGR00655  81 ADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSL--VERFGIPFHYI-PATKDNRVEHEKRQLELLK 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   90 AYQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPV 169
Cdd:TIGR00655 158 QYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRV 237
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 498122404  170 FEDDDADMLASRVLTQEHCIYPMVCKWFAEDRLLMVNGQAI 210
Cdd:TIGR00655 238 DHTDNVEDLIRAGRDIEKVVLARAVKLHLEDRVFVYENKTV 278
FMT_core_Formyl-FH4-Hydrolase_C cd08648
Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; ...
14-210 9.78e-32

Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formate is the substrate of phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase has been proposed to regulate the balance of FH4 and C1-FH4 in the cell. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. This domain belongs to the formyltransferase (FMT) domain superfamily. Members of this family have an N-terminal ACT domain, which is commonly involved in specifically bind an amino acid or other small ligand leading to regulation of the enzyme. The N-terminal of this protein family may be responsible for the binding of the regulators methionine and glycine.


Pssm-ID: 187717 [Multi-domain]  Cd Length: 196  Bit Score: 114.58  E-value: 9.78e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  14 KNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLerAKAAGVNAHSVnPKNFGSREEFDHELMVQIDAYQP 93
Cdd:cd08648    1 KRVAIFVSKEDHCLYDLLHRWREGELPCEIPLVISNHPDLRPL--AERFGIPFHHI-PVTKDTKAEAEAEQLELLEEYGV 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  94 DLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFEDD 173
Cdd:cd08648   78 DLVVLARYMQILSPDFVERYPNRIINIHHSFLPAFKGAKPYHQAFERGVKLIGATAHYVTEELDEGPIIEQDVERVSHRD 157
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 498122404 174 DADMLA-------SRVLTQehciypmVCKWFAEDRLLMVNGQAI 210
Cdd:cd08648  158 SVEDLVrkgrdieKQVLAR-------AVKWHLEDRVLVYGNKTV 194
purU PRK06027
formyltetrahydrofolate deformylase; Reviewed
13-207 3.42e-29

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 235676 [Multi-domain]  Cd Length: 286  Bit Score: 110.20  E-value: 3.42e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  13 KKNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAFGLerAKAAGVNAH--SVNPKNfgsREEFDHELMVQIDA 90
Cdd:PRK06027  89 RKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSL--VERFGIPFHhvPVTKET---KAEAEARLLELIDE 163
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  91 YQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVF 170
Cdd:PRK06027 164 YQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVD 243
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 498122404 171 EDDDADMLA-------SRVLTQehciypmVCKWFAEDRLLmVNG 207
Cdd:PRK06027 244 HRDTAEDLVragrdveKQVLAR-------AVRWHLEDRVL-VYG 279
Fmt COG0223
Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];
81-182 5.19e-23

Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];


Pssm-ID: 439993 [Multi-domain]  Cd Length: 308  Bit Score: 94.02  E-value: 5.19e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  81 DHELMVQIDAYQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGP 160
Cdd:COG0223   67 DPEFLEELRALNPDLIVVVAYGQILPKEVLDIPRLGCINLHASLLPRYRGAAPIQWAILNGDTETGVTIMQMDEGLDTGD 146
                         90       100
                 ....*....|....*....|..
gi 498122404 161 VILQAKVPVFEDDDADMLASRV 182
Cdd:COG0223  147 ILLQEEVPIGPDDTAGSLHDKL 168
FMT_core_Met-tRNA-FMT_N cd08646
Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA ...
57-181 7.03e-22

Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA formyltransferase (Met-tRNA-FMT), N-terminal formyltransferase domain. Met-tRNA-FMT transfers a formyl group from N-10 formyltetrahydrofolate to the amino terminal end of a methionyl-aminoacyl-tRNA acyl moiety, yielding formyl-Met-tRNA. Formyl-Met-tRNA plays essential role in protein translation initiation by forming complex with IF2. The formyl group plays a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The N-terminal domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187715 [Multi-domain]  Cd Length: 204  Bit Score: 89.04  E-value: 7.03e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  57 ERAKAAGVNAHSvnPKNFGSREEFDhelmvQIDAYQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPG---Lht 133
Cdd:cd08646   50 ELALELGLPVLQ--PEKLKDEEFLE-----ELKALKPDLIVVVAYGQILPKEILDLPPYGCINVHPSLLPKYRGaapI-- 120
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 498122404 134 hQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFEDDDADMLASR 181
Cdd:cd08646  121 -QRAILNGDKETGVTIMKMDEGLDTGDILAQEEVPIDPDDTAGELLDK 167
PRK13011 PRK13011
formyltetrahydrofolate deformylase; Reviewed
83-207 9.36e-19

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 237266 [Multi-domain]  Cd Length: 286  Bit Score: 82.34  E-value: 9.36e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  83 ELMVQIDAYQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVI 162
Cdd:PRK13011 156 QVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPII 235
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 498122404 163 LQAKVPVFEDDDADMLASRVLTQEHCIYPMVCKWFAEDRLLMvNG 207
Cdd:PRK13011 236 EQDVERVDHAYSPEDLVAKGRDVECLTLARAVKAHIERRVFL-NG 279
PLN02828 PLN02828
formyltetrahydrofolate deformylase
94-164 9.48e-19

formyltetrahydrofolate deformylase


Pssm-ID: 178422  Cd Length: 268  Bit Score: 82.10  E-value: 9.48e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 498122404  94 DLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQ 164
Cdd:PLN02828 149 DFLVLARYMQILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 219
PLN02285 PLN02285
methionyl-tRNA formyltransferase
8-181 1.35e-18

methionyl-tRNA formyltransferase


Pssm-ID: 215159 [Multi-domain]  Cd Length: 334  Bit Score: 82.43  E-value: 1.35e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   8 KTSHSKKNIVVLVSG--SGSNLQAILDAcdNNMIDAS--VKAVFSNKAEAFG----------LERAKAAGVNAHSVNPKN 73
Cdd:PLN02285   1 AGSGRKKRLVFLGTPevAATVLDALLDA--SQAPDSAfeVAAVVTQPPARRGrgrklmpspvAQLALDRGFPPDLIFTPE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  74 FGSREEFDHELmvqiDAYQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVT 153
Cdd:PLN02285  79 KAGEEDFLSAL----RELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTV 154
                        170       180
                 ....*....|....*....|....*...
gi 498122404 154 EELDGGPVILQAKVPVFEDDDADMLASR 181
Cdd:PLN02285 155 RALDAGPVIAQERVEVDEDIKAPELLPL 182
purU PRK13010
formyltetrahydrofolate deformylase; Reviewed
13-208 4.76e-18

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 139334 [Multi-domain]  Cd Length: 289  Bit Score: 80.61  E-value: 4.76e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  13 KKNIVVLVSGSGSNLQAILDACDNNMIDASVKAVFSNKAEAfgLERAKAAGVNAH--SVNPKNFGSREEfdhELMVQIDA 90
Cdd:PRK13010  93 RPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDL--QPLAVQHDIPFHhlPVTPDTKAQQEA---QILDLIET 167
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  91 YQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVF 170
Cdd:PRK13010 168 SGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVD 247
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 498122404 171 EDDDADMLASRVLTQEHCIYPMVCKWFAEDRLLMvNGQ 208
Cdd:PRK13010 248 HSYSPEDLVAKGRDVECLTLARAVKAFIEHRVFI-NGD 284
FMT_core_like_3 cd08653
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
88-182 1.81e-17

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187721 [Multi-domain]  Cd Length: 152  Bit Score: 76.10  E-value: 1.81e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  88 IDAYQPDLIVLAGyMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEH-GTSVHFVTEELDGGPVILQAK 166
Cdd:cd08653   43 LRALAPDVVSVYG-CGIIKDALLAIPPLGVLNLHGGILPDYRGVHTGFWALANGDPDNvGVTVHLVDAGIDTGDVLAQAR 121
                         90
                 ....*....|....*.
gi 498122404 167 VPVFEDDDADMLASRV 182
Cdd:cd08653  122 PPLAAGDTLLSLYLRL 137
fmt TIGR00460
methionyl-tRNA formyltransferase; The top-scoring characterized proteins other than ...
92-173 2.65e-17

methionyl-tRNA formyltransferase; The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273088 [Multi-domain]  Cd Length: 313  Bit Score: 78.60  E-value: 2.65e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404   92 QPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFE 171
Cdd:TIGR00460  78 KPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEE 157

                  ..
gi 498122404  172 DD 173
Cdd:TIGR00460 158 ED 159
FMT_core_like_5 cd08823
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
92-182 6.47e-13

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187725 [Multi-domain]  Cd Length: 177  Bit Score: 64.39  E-value: 6.47e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  92 QPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFE 171
Cdd:cd08823   71 AADTVVVFTFPYRIPQHILDLPPLGFYNLHPGLLPAYRGPDPLFWQIRNQEQETAITVHKMTAEIDRGPIVLEQFTPIHP 150
                         90
                 ....*....|.
gi 498122404 172 DDDADMLASRV 182
Cdd:cd08823  151 DDTYGLLCSRL 161
FMT_core_like_4 cd08651
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
15-182 1.95e-11

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187720 [Multi-domain]  Cd Length: 180  Bit Score: 60.36  E-value: 1.95e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  15 NIVVL--VSGSGSNLQAILDACDNnmidasVKAVFSNKAEAFG--------LERAKAAGVNAHSVNPKNfgsreefDHEL 84
Cdd:cd08651    1 RIVFIgcVEFSLIALEAILEAGGE------VVGVITLDDSSSNndsdyldlDSFARKNGIPYYKFTDIN-------DEEI 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  85 MVQIDAYQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQ 164
Cdd:cd08651   68 IEWIKEANPDIIFVFGWSQLLKPEILAIPRLGVIGFHPTKLPKNRGRAPIPWAILLGLKETASTFFWMDEGADSGDILSQ 147
                        170
                 ....*....|....*...
gi 498122404 165 AKVPVFEDDDADMLASRV 182
Cdd:cd08651  148 EPFPIDKDDTANSLYDKI 165
FMT_core_ArnA_N cd08644
ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for ...
78-199 4.29e-11

ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for the modification of lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. The C-terminal dehydrogenase domain of ArnA catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O), while the N-terminal formyltransferase domain of ArnA catalyzes the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). This domain family represents the catalytic core of the N-terminal formyltransferase domain. The formyltransferase also contains a smaller C-terminal domain the may be involved in substrate binding. ArnA forms a hexameric structure, in which the dehydrogenase domains are arranged at the center of the particle with the transformylase domains on the outside of the particle.


Pssm-ID: 187713 [Multi-domain]  Cd Length: 203  Bit Score: 60.05  E-value: 4.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  78 EEFDHELMV-QIDAYQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEEL 156
Cdd:cd08644   60 DDINHPEWVeRLRALKPDLIFSFYYRHMISEDILEIARLGAFNLHGSLLPKYRGRAPLNWALINGETETGVTLHRMTKKP 139
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 498122404 157 DGGPVILQAKVPVFEDDDADMLASRVLtqeHCIYPMVCKWFAE 199
Cdd:cd08644  140 DAGAIVDQEKVPILPDDTAKSLFHKLC---VAARRLLARTLPA 179
FMT_core_NRPS_like cd08649
N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins ...
103-175 7.04e-11

N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins involved in the synthesis of Oxazolomycin; This family represents the N-terminal formyl transferase catalytic core domain present in a subgroup of non-ribosomal peptide synthetases. In Streptomyces albus a member of this family has been shown to be involved in the synthesis of oxazolomycin (OZM). OZM is a hybrid peptide-polyketide antibiotic and exhibits potent antitumor and antiviral activities. It is a multi-domain protein consisting of a formyl transferase domain, a Flavin-utilizing monoxygenase domain, a LuxE domain functioning as an acyl protein synthetase and a pp-binding domain, which may function as an acyl carrier. It shows sequence similarity with other peptide-polyketide biosynthesis proteins.


Pssm-ID: 187718 [Multi-domain]  Cd Length: 166  Bit Score: 58.81  E-value: 7.04e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 498122404 103 RILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFEDDDA 175
Cdd:cd08649   72 RILPSEVLALPRKGAINFHDGPLPRYAGLNATSWALLAGETRHGVTWHRIEEGVDAGDILVQRPFDIAPDDTA 144
FMT_core_like_6 cd08820
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
94-178 2.23e-09

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187722 [Multi-domain]  Cd Length: 173  Bit Score: 54.75  E-value: 2.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  94 DLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFEDD 173
Cdd:cd08820   71 DILISVQYHWILPGSILEKAKEIAFNLHNAPLPEYRGCNQFSHAILNGDDQFGTTIHWMAEGIDSGDIIFEKRFPIPSDC 150

                 ....*
gi 498122404 174 DADML 178
Cdd:cd08820  151 TVISL 155
FMT_core_FDH_N cd08647
10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain; This family ...
88-209 5.26e-08

10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain; This family represents the N-terminal hydrolase domain of the bifunctional protein 10-formyltetrahydrofolate dehydrogenase (FDH). This domain contains a 10-formyl-tetrahydrofolate (10-formyl-THF) binding site and shares sequence homology and structural topology with other enzymes utilizing this substrate. This domain functions as a hydrolase, catalyzing the conversion of 10-formyl-THF, a precursor for nucleotide biosynthesis, to tetrahydrofolate (THF). The overall FDH reaction mechanism is a coupling of two sequential reactions, a hydrolase and a formyl dehydrogenase, bridged by a substrate transfer step. The N-terminal hydrolase domain removes the formyl group from 10-formyl-THF and the C-terminal NADP-dependent dehydrogenase domain then reduces the formyl group to carbon dioxide. The two catalytic domains are connected by a third intermediate linker domain that transfers the formyl group, covalently attached to the sulfhydryl group of the phosphopantetheine arm, from the N-terminal domain to the C-terminal domain.


Pssm-ID: 187716 [Multi-domain]  Cd Length: 203  Bit Score: 51.30  E-value: 5.26e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  88 IDAYQ---PDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQ 164
Cdd:cd08647   70 VAKYKalgAELNVLPFCSQFIPMEVIDAPKHGSIIYHPSILPRHRGASAINWTLIHGDKKAGFTIFWADDGLDTGPILLQ 149
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 498122404 165 AKVPVFEDDDADMLASRVLtqehciYPMVCKWFAEDRLLMVNGQA 209
Cdd:cd08647  150 KECDVLPNDTVDTLYNRFL------YPEGIKAMVEAVRLIAEGKA 188
PRK08125 PRK08125
bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ...
78-175 6.29e-08

bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA;


Pssm-ID: 236156 [Multi-domain]  Cd Length: 660  Bit Score: 52.29  E-value: 6.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  78 EEFDHELMVQ-IDAYQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEEL 156
Cdd:PRK08125  60 EDVNHPLWVErIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRA 139
                         90
                 ....*....|....*....
gi 498122404 157 DGGPVILQAKVPVFEDDDA 175
Cdd:PRK08125 140 DAGAIVAQQRVAIAPDDTA 158
PRK06988 PRK06988
formyltransferase;
83-176 5.68e-07

formyltransferase;


Pssm-ID: 235902 [Multi-domain]  Cd Length: 312  Bit Score: 48.92  E-value: 5.68e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  83 ELMVQIDAYQPDLIVLAGYMRILSSEFVRHYAGKMINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVI 162
Cdd:PRK06988  68 ELRAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAKPDAGAIV 147
                         90
                 ....*....|....
gi 498122404 163 LQAKVPVFEDDDAD 176
Cdd:PRK06988 148 DQTAVPILPDDTAA 161
FMT_core_like_2 cd08822
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
18-183 7.29e-06

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187724 [Multi-domain]  Cd Length: 192  Bit Score: 45.14  E-value: 7.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  18 VLVSGSGSNLQAILDACDNNMIdaSVKAVfSNKAEAFGLERAKAAGVNAHSV--NPKNFGSREEFDHelmvqidayqPDL 95
Cdd:cd08822    3 IAIAGQKWFGTAVLEALRARGI--ALLGV-AAPEEGDRLAAAARTAGSRGLPraGVAVLPADAIPPG----------TDL 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  96 IVLAGYMRILSSEFV---RHYAgkmINIHPSLLPKYPGLHTHQRAIDAQDKEHGTSVHFVTEELDGGPVILQAKVPVFED 172
Cdd:cd08822   70 IVAAHCHAFISAKTRaraRLGA---IGYHPSLLPRHRGRDAVEWTIRMRDPITGGTVYHLDDGVDGGPIAAQDWCHVRPG 146
                        170
                 ....*....|.
gi 498122404 173 DDADMLASRVL 183
Cdd:cd08822  147 DTAAELWRRAL 157
PRK07579 PRK07579
dTDP-4-amino-4,6-dideoxyglucose formyltransferase;
67-186 2.01e-04

dTDP-4-amino-4,6-dideoxyglucose formyltransferase;


Pssm-ID: 236058 [Multi-domain]  Cd Length: 245  Bit Score: 41.43  E-value: 2.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122404  67 HSVNPKNFGSREEFDHELMvQIDAYQPDLIVLAGYMRILSSEFVRHYAGKM------INIHPSLLPKYPGLHTHQRAIdA 140
Cdd:PRK07579  33 CSFKSQTSFAKEIYQSPIK-QLDVAERVAEIVERYDLVLSFHCKQRFPAKLvngvrcINIHPGFNPYNRGWFPQVFSI-I 110
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 498122404 141 QDKEHGTSVHFVTEELDGGPVILQAKVPVFEDDDADMLASRVLTQE 186
Cdd:PRK07579 111 NGLKIGATIHEMDEQLDHGPIIAQREVEIESWDSSGSVYARVMDIE 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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