NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|498122454|ref|WP_010436610|]
View 

MULTISPECIES: DUF4156 domain-containing protein [Vibrio]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4156 super family cl16354
Domain of unknown function (DUF4156); The function of this family is unknown but members are ...
 42-109 3.56e-20

Domain of unknown function (DUF4156); The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.


The actual alignment was detected with superfamily member pfam13698:

Pssm-ID: 433411  Cd Length: 88  Bit Score: 77.77  E-value: 3.56e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122454   42 EQCEYKGEVTGSEGHWYSYLFFPNDTLIQGAMNELKSNTIELGADTVIFTLPQDFST--SVTMLGTAYLC 109
Cdd:pfam13698  19 AGCQLLGTVTGSQGNWFTGIYTSNDNLMRGALNDLRNEAAALGGNTIVLVTSPPFETptDGTMIGNAYRC 88
 
Name Accession Description Interval E-value
DUF4156 pfam13698
Domain of unknown function (DUF4156); The function of this family is unknown but members are ...
 42-109 3.56e-20

Domain of unknown function (DUF4156); The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.


Pssm-ID: 433411  Cd Length: 88  Bit Score: 77.77  E-value: 3.56e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122454   42 EQCEYKGEVTGSEGHWYSYLFFPNDTLIQGAMNELKSNTIELGADTVIFTLPQDFST--SVTMLGTAYLC 109
Cdd:pfam13698  19 AGCQLLGTVTGSQGNWFTGIYTSNDNLMRGALNDLRNEAAALGGNTIVLVTSPPFETptDGTMIGNAYRC 88
 
Name Accession Description Interval E-value
DUF4156 pfam13698
Domain of unknown function (DUF4156); The function of this family is unknown but members are ...
 42-109 3.56e-20

Domain of unknown function (DUF4156); The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.


Pssm-ID: 433411  Cd Length: 88  Bit Score: 77.77  E-value: 3.56e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498122454   42 EQCEYKGEVTGSEGHWYSYLFFPNDTLIQGAMNELKSNTIELGADTVIFTLPQDFST--SVTMLGTAYLC 109
Cdd:pfam13698  19 AGCQLLGTVTGSQGNWFTGIYTSNDNLMRGALNDLRNEAAALGGNTIVLVTSPPFETptDGTMIGNAYRC 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH