NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|499376528|ref|WP_011064106|]
View 

MULTISPECIES: molybdopterin-binding protein [Pseudomonas]

Protein Classification

TOBE domain-containing protein( domain architecture ID 10007583)

TOBE (Transport-associated OB) domain-containing protein is also known as molybdopterin-binding protein that may be involved in the recognition of small ligands such as molybdenum and sulfate

CATH:  2.40.50.100
Gene Ontology:  GO:0015689
PubMed:  8458342
SCOP:  4000175

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MopI COG3585
Molybdopterin-binding protein MopI [Coenzyme transport and metabolism];
5-71 2.00e-17

Molybdopterin-binding protein MopI [Coenzyme transport and metabolism];


:

Pssm-ID: 442804 [Multi-domain]  Cd Length: 141  Bit Score: 70.49  E-value: 2.00e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499376528   5 AINVRNQFKGTIKEIVEGDVLSEIDVQTASG-IVTSVITTRSVKELELSIGSEVIAFVKSTEVSIAKL 71
Cdd:COG3585   73 KLSARNQLKGTVTRIERGAVNSEVVLDLGGGtTLTAVITNESVEELGLKEGDEVTALFKASSVILAVD 140
 
Name Accession Description Interval E-value
MopI COG3585
Molybdopterin-binding protein MopI [Coenzyme transport and metabolism];
5-71 2.00e-17

Molybdopterin-binding protein MopI [Coenzyme transport and metabolism];


Pssm-ID: 442804 [Multi-domain]  Cd Length: 141  Bit Score: 70.49  E-value: 2.00e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499376528   5 AINVRNQFKGTIKEIVEGDVLSEIDVQTASG-IVTSVITTRSVKELELSIGSEVIAFVKSTEVSIAKL 71
Cdd:COG3585   73 KLSARNQLKGTVTRIERGAVNSEVVLDLGGGtTLTAVITNESVEELGLKEGDEVTALFKASSVILAVD 140
Mop TIGR00638
molybdenum-pterin binding domain; This model describes a multigene family of molybdenum-pterin ...
 6-69 9.80e-12

molybdenum-pterin binding domain; This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins. [Transport and binding proteins, Anions]


Pssm-ID: 273189 [Multi-domain]  Cd Length: 69  Bit Score: 54.28  E-value: 9.80e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499376528   6 INVRNQFKGTIKEIVEGDVLSEIDVQTASG-IVTSVITTRSVKELELSIGSEVIAFVKSTEVSIA 69
Cdd:TIGR00638  3 TSARNQLKGKVVAIEDGDVNAEVDLLLGGGtKLTAVITLESVAELGLKPGKEVYAVIKAPWVILA 67
TOBE pfam03459
TOBE domain; The TOBE domain (Transport-associated OB) always occurs as a dimer as the ...
 8-66 1.12e-09

TOBE domain; The TOBE domain (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum and sulfate. Found in ABC transporters immediately after the ATPase domain.


Pssm-ID: 427310 [Multi-domain]  Cd Length: 60  Bit Score: 48.81  E-value: 1.12e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 499376528   8 VRNQFKGTIKEIVEGDVLSEIDVQTASGI-VTSVITTRSVKELELSIGSEVIAFVKSTEV 66
Cdd:pfam03459  1 ARNQLPGTVTVIEPLGSEVEVRVDLGGGLtLTARITRDSAEELGLAPGDEVWALIKATKV 60
PRK10676 PRK10676
DNA-binding transcriptional regulator ModE; Provisional
 9-70 1.28e-05

DNA-binding transcriptional regulator ModE; Provisional


Pssm-ID: 182640 [Multi-domain]  Cd Length: 263  Bit Score: 40.79  E-value: 1.28e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499376528   9 RNQFKGTIKEIVEGDVLSEIDVQTASGI--VTSVITTRSVKELELSIGSEVIAFVKSTEVSIAK 70
Cdd:PRK10676 127 RNQWFGTITARDHQQVQQHVDVLLADGKtrLKVAITAQSAERLGLDEGKEVLVLIKAPWVGITQ 190
 
Name Accession Description Interval E-value
MopI COG3585
Molybdopterin-binding protein MopI [Coenzyme transport and metabolism];
5-71 2.00e-17

Molybdopterin-binding protein MopI [Coenzyme transport and metabolism];


Pssm-ID: 442804 [Multi-domain]  Cd Length: 141  Bit Score: 70.49  E-value: 2.00e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499376528   5 AINVRNQFKGTIKEIVEGDVLSEIDVQTASG-IVTSVITTRSVKELELSIGSEVIAFVKSTEVSIAKL 71
Cdd:COG3585   73 KLSARNQLKGTVTRIERGAVNSEVVLDLGGGtTLTAVITNESVEELGLKEGDEVTALFKASSVILAVD 140
Mop TIGR00638
molybdenum-pterin binding domain; This model describes a multigene family of molybdenum-pterin ...
 6-69 9.80e-12

molybdenum-pterin binding domain; This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins. [Transport and binding proteins, Anions]


Pssm-ID: 273189 [Multi-domain]  Cd Length: 69  Bit Score: 54.28  E-value: 9.80e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499376528   6 INVRNQFKGTIKEIVEGDVLSEIDVQTASG-IVTSVITTRSVKELELSIGSEVIAFVKSTEVSIA 69
Cdd:TIGR00638  3 TSARNQLKGKVVAIEDGDVNAEVDLLLGGGtKLTAVITLESVAELGLKPGKEVYAVIKAPWVILA 67
TOBE pfam03459
TOBE domain; The TOBE domain (Transport-associated OB) always occurs as a dimer as the ...
 8-66 1.12e-09

TOBE domain; The TOBE domain (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum and sulfate. Found in ABC transporters immediately after the ATPase domain.


Pssm-ID: 427310 [Multi-domain]  Cd Length: 60  Bit Score: 48.81  E-value: 1.12e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 499376528   8 VRNQFKGTIKEIVEGDVLSEIDVQTASGI-VTSVITTRSVKELELSIGSEVIAFVKSTEV 66
Cdd:pfam03459  1 ARNQLPGTVTVIEPLGSEVEVRVDLGGGLtLTARITRDSAEELGLAPGDEVWALIKATKV 60
PRK10676 PRK10676
DNA-binding transcriptional regulator ModE; Provisional
 9-70 1.28e-05

DNA-binding transcriptional regulator ModE; Provisional


Pssm-ID: 182640 [Multi-domain]  Cd Length: 263  Bit Score: 40.79  E-value: 1.28e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499376528   9 RNQFKGTIKEIVEGDVLSEIDVQTASGI--VTSVITTRSVKELELSIGSEVIAFVKSTEVSIAK 70
Cdd:PRK10676 127 RNQWFGTITARDHQQVQQHVDVLLADGKtrLKVAITAQSAERLGLDEGKEVLVLIKAPWVGITQ 190
PRK10676 PRK10676
DNA-binding transcriptional regulator ModE; Provisional
 10-71 1.65e-03

DNA-binding transcriptional regulator ModE; Provisional


Pssm-ID: 182640 [Multi-domain]  Cd Length: 263  Bit Score: 34.63  E-value: 1.65e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499376528  10 NQFKGTIKEIVEGDVLSEIDVQTASG-IVTSVITTRSVKELELSIGSEVIAFVKSTEVSIAKL 71
Cdd:PRK10676 200 NQLPGTISHIERGAEQSEVLMALPDGqTLCATVPNNEAARLSLQQGDAVTAYFNADRVIIATL 262
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH