|
Name |
Accession |
Description |
Interval |
E-value |
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
3-240 |
2.12e-126 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 358.59 E-value: 2.12e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVS 82
Cdd:COG1120 2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARRIAYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:COG1120 82 QEPPAPFGLTVRELVALGRYPHLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 163 DEPTNHLDIKYQIQILNLVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYEVDCKI 238
Cdd:COG1120 162 DEPTSHLDLAHQLEVLELLRRLarerGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPELLEEVYGVEARV 241
|
..
gi 499411747 239 HT 240
Cdd:COG1120 242 IE 243
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
3-240 |
2.59e-94 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 277.38 E-value: 2.59e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVS 82
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRRAVLP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIAFDIKVEDMVLMGRSPHkkmlEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQ------- 155
Cdd:COG4559 82 QHSSLAFPFTVEEVVALGRAPH----GSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAQlwepvdg 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 156 QVKLLILDEPTNHLDIKYQIQILNLVKSL--KTTAVVA-LHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVY 232
Cdd:COG4559 158 GPRWLFLDEPTSALDLAHQHAVLRLARQLarRGGGVVAvLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDELLERVY 237
|
....*...
gi 499411747 233 EVDCKIHT 240
Cdd:COG4559 238 GADLRVLA 245
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-243 |
3.11e-86 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 257.01 E-value: 3.11e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIyriC---KPESGAIYLDGKNLLTMPIKDMACE 77
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL---SgelSPDSGEVRLNGRPLADWSPAELARR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 LGVVSQFNHIAFDIKVEDMVLMGRSPHkkmlEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQ-- 155
Cdd:PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAPH----GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQlw 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 156 ----QVKLLILDEPTNHLDIKYQIQILNLVKSLKT---TAVVA-LHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQL 227
Cdd:PRK13548 154 epdgPPRWLLLDEPTSALDLAHQHHVLRLARQLAHergLAVIVvLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPET 233
|
250
....*....|....*.
gi 499411747 228 IKEVYEVDCKIHTEQE 243
Cdd:PRK13548 234 LRRVYGADVLVQPHPE 249
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
4-217 |
1.25e-83 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 247.35 E-value: 1.25e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 4 SVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQ 83
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 84 fnhiafdikvedmvlmgrsphkkmleqdneqdykiareMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILD 163
Cdd:cd03214 81 --------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLD 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 164 EPTNHLDIKYQIQILNLVKSLKT----TAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03214 123 EPTSHLDIAHQIELLELLRRLARergkTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| F420-0_ABC_ATP |
TIGR03873 |
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ... |
3-240 |
1.96e-79 |
|
proposed F420-0 ABC transporter, ATP-binding protein; This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Pssm-ID: 163585 [Multi-domain] Cd Length: 256 Bit Score: 239.72 E-value: 1.96e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVS 82
Cdd:TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 163 DEPTNHLDIKYQIQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYEVDCKIH 239
Cdd:TIGR03873 162 DEPTNHLDVRAQLETLALVRELaatGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGVDATVL 241
|
.
gi 499411747 240 T 240
Cdd:TIGR03873 242 T 242
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
3-232 |
9.83e-79 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 237.29 E-value: 9.83e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmPIKDMACELGVVS 82
Cdd:COG1121 7 IELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGK-----PPRRARRRIGYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHI--AFDIKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:COG1121 82 QRAEVdwDFPITVRDVVLMGRYGRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMhNGNVVANGEPKDILTSQLIKEVY 232
Cdd:COG1121 162 LLDEPFAGVDAATEEALYELLRELRregKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPPEEVLTPENLSRAY 235
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-247 |
4.18e-72 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 221.04 E-value: 4.18e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGV 80
Cdd:PRK11231 1 MTLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSLKT---TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYEVDCK 237
Cdd:PRK11231 161 LLDEPTTYLDINHQVELMRLMRELNTqgkTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEAE 240
|
250
....*....|...
gi 499411747 238 IHTE---QEPMYI 247
Cdd:PRK11231 241 IHPEpvsGTPMCV 253
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
4-217 |
3.30e-70 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 214.70 E-value: 3.30e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 4 SVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmPIKDMACELGVVSQ 83
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK-----PLEKERKRIGYVPQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 84 FNHIAFD--IKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLI 161
Cdd:cd03235 76 RRSIDRDfpISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 162 LDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMhNGNVVANG 217
Cdd:cd03235 156 LDEPFAGVDPKTQEDIYELLRELRregMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
4-240 |
8.42e-69 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 212.25 E-value: 8.42e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 4 SVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQ 83
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKRLAILRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 84 FNHIAFDIKVEDMVLMGRSPHKKmlEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILD 163
Cdd:COG4604 83 ENHINSRLTVRELVAFGRFPYSK--GRLTAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 164 EPTNHLDIKYQIQILNLVKSL-----KTTAVVaLHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYEVDCKI 238
Cdd:COG4604 161 EPLNNLDMKHSVQMMKLLRRLadelgKTVVIV-LHDINFASCYADHIVAMKDGRVVAQGTPEEIITPEVLSDIYDTDIEV 239
|
..
gi 499411747 239 HT 240
Cdd:COG4604 240 EE 241
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-234 |
3.20e-67 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 213.16 E-value: 3.20e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGV 80
Cdd:PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYEV 234
Cdd:PRK09536 162 LLDEPTASLDINHQVRTLELVRRLvddGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDA 238
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
3-224 |
3.74e-58 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 184.46 E-value: 3.74e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQ-LGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVV 81
Cdd:COG1122 1 IELENLSFSyPGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 -----SQFnhiaFDIKVEDMVL-----MGRSPhKKMLEqdneqdykIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLAR 151
Cdd:COG1122 81 fqnpdDQL----FAPTVEEDVAfgpenLGLPR-EEIRE--------RVEEALELVGLEHLADRPPHELSGGQKQRVAIAG 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 152 TLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILT 224
Cdd:COG1122 148 VLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNkegKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFS 223
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
2-238 |
9.87e-58 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 184.80 E-value: 9.87e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVV 81
Cdd:PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQFNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLI 161
Cdd:PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 162 LDEPTNHLDIKYQIQILNLVKSLKT----TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYEVDCK 237
Cdd:PRK10253 167 LDEPTTWLDISHQIDLLELLSELNRekgyTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRCM 246
|
.
gi 499411747 238 I 238
Cdd:PRK10253 247 I 247
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
3-227 |
7.64e-57 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 181.42 E-value: 7.64e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcELGVVS 82
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRR-RIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIAFDIKVEDMVLMgrspHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:COG1131 80 QEPALYPDLTVRENLRF----FARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLIL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 163 DEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQL 227
Cdd:COG1131 156 DEPTSGLDPEARRELWELLRELAaegKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARLL 223
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
3-232 |
2.09e-54 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 175.25 E-value: 2.09e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQL-GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP---IKDMACEL 78
Cdd:COG3638 3 LELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRgraLRRLRRRI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVSQ-FNhiafdiKVEDM-----VLMGRSPH----KKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVL 148
Cdd:COG3638 83 GMIFQqFN------LVPRLsvltnVLAGRLGRtstwRSLLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRVA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 149 LARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDiLT 224
Cdd:COG3638 157 IARALVQEPKLILADEPVASLDPKTARQVMDLLRRIaredGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAE-LT 235
|
....*...
gi 499411747 225 SQLIKEVY 232
Cdd:COG3638 236 DAVLREIY 243
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
13-211 |
3.03e-53 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 171.11 E-value: 3.03e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQF-NHIAFDI 91
Cdd:cd03225 12 GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNpDDQFFGP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 92 KVEDMVLMGRsphkKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI 171
Cdd:cd03225 92 TVEEEVAFGL----ENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDP 167
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 499411747 172 KYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:cd03225 168 AGRRELLELLKKLKaegKTIIIVTHDLDLLLELADRVIVLEDG 210
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-225 |
3.33e-53 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 179.33 E-value: 3.33e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINV-----QLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP---IKDM 74
Cdd:COG1123 261 LEVRNLSKrypvrGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSrrsLREL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 75 ACELGVV-----SQFNHIafdIKVEDMVLMGRSPHKKMleqDNEQDYKIAREMLEKVDM-LNYAKRSFSTLSGGEKQRVL 148
Cdd:COG1123 341 RRRVQMVfqdpySSLNPR---MTVGDIIAEPLRLHGLL---SRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVA 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 149 LARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILT 224
Cdd:COG1123 415 IARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQrelgLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFA 494
|
.
gi 499411747 225 S 225
Cdd:COG1123 495 N 495
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
3-232 |
1.01e-52 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 170.83 E-value: 1.01e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGN-KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP---IKDMACEL 78
Cdd:cd03256 1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKgkaLRQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVSQ-FNHIAfDIKVEDMVLMGR----SPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTL 153
Cdd:cd03256 81 GMIFQqFNLIE-RLSVLENVLSGRlgrrSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 154 AQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT----TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDiLTSQLIK 229
Cdd:cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINReegiTVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE-LTDEVLD 238
|
...
gi 499411747 230 EVY 232
Cdd:cd03256 239 EIY 241
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
3-223 |
1.08e-52 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 170.81 E-value: 1.08e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcELGVVS 82
Cdd:COG4555 2 IEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARR-QIGVLP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIAFDIKVEDMVLMgrspHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:COG4555 81 DERGLYDRLTVRENIRY----FAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 163 DEPTNHLDIKYQIQILNLVKSLKT---TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:COG4555 157 DEPTNGLDVMARRLLREILRALKKegkTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELR 220
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
3-232 |
4.33e-52 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 169.40 E-value: 4.33e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGN-KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKD---MACEL 78
Cdd:TIGR02315 2 LEVENLSKVYPNgKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKlrkLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVSQ-FNHIAfDIKVEDMVLMGR----SPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTL 153
Cdd:TIGR02315 82 GMIFQhYNLIE-RLTVLENVLHGRlgykPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 154 AQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT----TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDiLTSQLIK 229
Cdd:TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKedgiTVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE-LDDEVLR 239
|
...
gi 499411747 230 EVY 232
Cdd:TIGR02315 240 HIY 242
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-225 |
2.50e-50 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 172.01 E-value: 2.50e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQL--GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPE---SGAIYLDGKNLLTMPIKDMACE 77
Cdd:COG1123 5 LEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRGRR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 LGVV-----SQFN--HIAFDIkVEDMVLMGRSPhkkmleqdnEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLA 150
Cdd:COG1123 85 IGMVfqdpmTQLNpvTVGDQI-AEALENLGLSR---------AEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 151 RTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTS 225
Cdd:COG1123 155 MALALDPDLLIADEPTTALDVTTQAEILDLLRELQrergTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAA 233
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
3-223 |
3.30e-49 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 161.89 E-value: 3.30e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLG----NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACEL 78
Cdd:COG1124 2 LEVRNLSVSYGqggrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVSQ-----FN--HIAFDIKVEDMVLMGRSPHKKMLEqdneqdykiarEMLEKVDM-LNYAKRSFSTLSGGEKQRVLLA 150
Cdd:COG1124 82 QMVFQdpyasLHprHTVDRILAEPLRIHGLPDREERIA-----------ELLEQVGLpPSFLDRYPHQLSGGQRQRVAIA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 151 RTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:COG1124 151 RALILEPELLLLDEPTSALDVSVQAEILNLLKDLReergLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLL 227
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
3-214 |
5.03e-49 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 161.13 E-value: 5.03e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNK----KIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP---IKDMA 75
Cdd:cd03257 2 LEVKNLSVSFPTGggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSrrlRKIRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 76 CELGVVSQFNHIAFD--IKVEDMVLMGRSPHKKMLEQdnEQDYKIAREMLEKVDMLNYAKRSF-STLSGGEKQRVLLART 152
Cdd:cd03257 82 KEIQMVFQDPMSSLNprMTIGEQIAEPLRIHGKLSKK--EARKEAVLLLLVGVGLPEEVLNRYpHELSGGQRQRVAIARA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 153 LAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAYCDKLYVMHNGNVV 214
Cdd:cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQeelgLTLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
3-222 |
1.42e-48 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 163.35 E-value: 1.42e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPI--KDMacelGV 80
Cdd:COG3842 6 LELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPekRNV----GM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQ----FNH------IAFDIKVEDMvlmGRSphkkmleqdnEQDyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLA 150
Cdd:COG3842 82 VFQdyalFPHltvaenVAFGLRMRGV---PKA----------EIR-ARVAELLELVGLEGLADRYPHQLSGGQQQRVALA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 151 RTLAQQVKLLILDEPTNHLDIK----YQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:COG3842 148 RALAPEPRVLLLDEPLSALDAKlreeMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEI 223
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
3-217 |
3.74e-48 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 158.07 E-value: 3.74e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMacELGVVS 82
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR--NIGMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QfNHIAFD-IKVEDMVLMGRSPHKKMLEQDNEQdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLI 161
Cdd:cd03259 79 Q-DYALFPhLTVAENIAFGLKLRGVPKAEIRAR----VRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 162 LDEPTNHLD--IKYQIQ--ILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03259 154 LDEPLSALDakLREELReeLKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
24-248 |
3.57e-47 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 156.92 E-value: 3.57e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICkPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIAFDIKVEDMVLMGRsP 103
Cdd:COG4138 18 QVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSAAELARHRAYLSQQQSPPFAMPVFQYLALHQ-P 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 104 HKKMLEQDNEQDYKIAREmLEKVDMLNyakRSFSTLSGGEKQRVLLARTLAQ-------QVKLLILDEPTNHLDIKYQIQ 176
Cdd:COG4138 96 AGASSEAVEQLLAQLAEA-LGLEDKLS---RPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLDEPMNSLDVAQQAA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 177 ILNLVKSLKT---TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYEVDCKIHT-EQEPMYIT 248
Cdd:COG4138 172 LDRLLRELCQqgiTVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVFGVKFRRLEvEGHRWLIP 247
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
3-241 |
4.79e-47 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 156.40 E-value: 4.79e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGA-IYLDGKNLLTMPIKDMACELGVV 81
Cdd:COG1119 4 LELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNdVRLFGERRGGEDVWELRKRIGLV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQFNHIAF--DIKVEDMVL------MGRSPHKkmleqdNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTL 153
Cdd:COG1119 84 SPALQLRFprDETVLDVVLsgffdsIGLYREP------TDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLIARAL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 154 AQQVKLLILDEPTNHLDIKYQIQILNLVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIK 229
Cdd:COG1119 158 VKDPELLILDEPTAGLDLGARELLLALLDKLaaegAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVLTSENLS 237
|
250
....*....|..
gi 499411747 230 EVYEVDCKIHTE 241
Cdd:COG1119 238 EAFGLPVEVERR 249
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
3-213 |
9.19e-47 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 154.96 E-value: 9.19e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKK----IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC-- 76
Cdd:cd03255 1 IELKNLSKTYGGGGekvqALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAfr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 --ELGVVSQFNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLA 154
Cdd:cd03255 81 rrHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER----AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499411747 155 QQVKLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLaAAYCDKLYVMHNGNV 213
Cdd:cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNkeagTTIVVVTHDPEL-AEYADRIIELRDGKI 218
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
3-225 |
1.30e-46 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 154.90 E-value: 1.30e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIkDMACELGVVS 82
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP-HEIARLGIGR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIA--FDIKVEDMVLMGRSPHKK------MLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLA 154
Cdd:cd03219 80 TFQIPRlfPELTVLENVMVAAQARTGsglllaRARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 155 QQVKLLILDEPT---NHLDIKYQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTS 225
Cdd:cd03219 160 TDPKLLLLDEPAaglNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
13-214 |
1.05e-45 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 152.13 E-value: 1.05e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC---ELGVVSQFNHIAF 89
Cdd:COG2884 13 GGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYlrrRIGVVFQDFRLLP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 DIKVED-----MVLMGRsPHKKMLEQdneqdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDE 164
Cdd:COG2884 93 DRTVYEnvalpLRVTGK-SRKEIRRR--------VREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLADE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 499411747 165 PTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVV 214
Cdd:COG2884 164 PTGNLDPETSWEIMELLEEINrrgTTVLIATHDLELVDRMPKRVLELEDGRLV 216
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-223 |
1.47e-45 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 155.69 E-value: 1.47e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLT-MPIKDMACelG 79
Cdd:COG1118 1 MSIEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTnLPPRERRV--G 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQ----FNH------IAFDIKVedmvlmgRSPHKKMLEQdneqdykIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLL 149
Cdd:COG1118 79 FVFQhyalFPHmtvaenIAFGLRV-------RPPSKAEIRA-------RVEELLELVQLEGLADRYPSQLSGGQRQRVAL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 150 ARTLAQQVKLLILDEPTNHLDIK--YQI--QILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:COG1118 145 ARALAVEPEVLLLDEPFGALDAKvrKELrrWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVY 222
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
4-232 |
2.47e-45 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 152.63 E-value: 2.47e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 4 SVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQ 83
Cdd:PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 84 FNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILD 163
Cdd:PRK10575 93 QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499411747 164 EPTNHLDIKYQIQILNLVKSLKT----TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVY 232
Cdd:PRK10575 173 EPTSALDIAHQVDVLALVHRLSQerglTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIY 245
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
3-226 |
3.39e-45 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 151.67 E-value: 3.39e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMA---CELG 79
Cdd:COG1127 6 IEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYelrRRIG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQFNhiA-FD-IKVEDMVLMgrsP---HKKMLEQDNEQdykIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLA 154
Cdd:COG1127 86 MLFQGG--AlFDsLTVFENVAF---PlreHTDLSEAEIRE---LVLEKLELVGLPGAADKMPSELSGGMRKRVALARALA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 155 QQVKLLILDEPTNHLDI--KYQIQ--ILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQ 226
Cdd:COG1127 158 LDPEILLYDEPTAGLDPitSAVIDelIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLASD 233
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
3-213 |
6.08e-44 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 146.00 E-value: 6.08e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMacelgvvs 82
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVK-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 qfNHIAFdikvedmvlmgrsphkkMLEQDNEQDYKIAREMLEkvdmlnyakrsfstLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:cd03230 73 --RRIGY-----------------LPEEPSLYENLTVRENLK--------------LSGGMKQRLALAQALLHDPELLIL 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 499411747 163 DEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNV 213
Cdd:cd03230 120 DEPTSGLDPESRREFWELLRELKkegKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
3-226 |
7.83e-44 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 148.03 E-value: 7.83e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKD---MACELG 79
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAElyrLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQFNHIAFDIKVEDMVLMGRSPHKKMLEQDNEqdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKL 159
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR---EIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499411747 160 LILDEPTNHLD--IKYQIQ--ILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQ 226
Cdd:cd03261 158 LLYDEPTAGLDpiASGVIDdlIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD 228
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
3-232 |
2.24e-43 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 147.49 E-value: 2.24e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcELGVVS 82
Cdd:COG0411 5 LEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIA-RLGIAR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIA-F-DIKVEDMVLMGRSPHKK-----------MLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLL 149
Cdd:COG0411 84 TFQNPRlFpELTVLENVLVAAHARLGrgllaallrlpRARREEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 150 ARTLAQQVKLLILDEPT---NHLDIKyqiQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:COG0411 164 ARALATEPKLLLLDEPAaglNPEETE---ELAELIRRLRDERGITIllieHDMDLVMGLADRIVVLDFGRVIAEGTPAEV 240
|
250
....*....|
gi 499411747 223 LTSQLIKEVY 232
Cdd:COG0411 241 RADPRVIEAY 250
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
4-211 |
5.14e-43 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 143.15 E-value: 5.14e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 4 SVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQ 83
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 84 fnhiafdikvedmvlmgrsphkkmleqdneqdykiaremlekvdmlnyakrsfstLSGGEKQRVLLARTLAQQVKLLILD 163
Cdd:cd00267 81 -------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 499411747 164 EPTNHLDIKYQIQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:cd00267 106 EPTSGLDPASRERLLELLRELaeeGRTVIIVTHDPELAELAADRVIVLKDG 156
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
3-213 |
1.35e-42 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 143.80 E-value: 1.35e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVS 82
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQVAYVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIaFDIKVEDMVLMGRSPHKKmleqdnEQDYKIAREMLEKVDM-LNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLI 161
Cdd:COG4619 81 QEPAL-WGGTVRDNLPFPFQLRER------KFDRERALELLERLGLpPDILDKPVERLSGGERQRLALIRALLLQPDVLL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 162 LDEPTNHLDIKYQIQILNLVKSLKT----TAVVALHDLNLAAAYCDKLYVMHNGNV 213
Cdd:COG4619 154 LDEPTSALDPENTRRVEELLREYLAeegrAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
3-216 |
2.27e-42 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 143.65 E-value: 2.27e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKK----IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMA--- 75
Cdd:COG1136 5 LELRNLTKSYGTGEgevtALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELArlr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 76 -CELGVVSQ-FNHIAFdIKVEDMVLMGRSPHKKMLEQDNEQdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTL 153
Cdd:COG1136 85 rRHIGFVFQfFNLLPE-LTALENVALPLLLAGVSRKERRER----ARELLERVGLGDRLDHRPSQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 154 AQQVKLLILDEPTNHLDIKYQIQILNLVKSL----KTTAVVALHDLNLaAAYCDKLYVMHNGNVVAN 216
Cdd:COG1136 160 VNRPKLILADEPTGNLDSKTGEEVLELLRELnrelGTTIVMVTHDPEL-AARADRVIRLRDGRIVSD 225
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
3-232 |
4.29e-42 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 144.58 E-value: 4.29e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIY-RICKPE-------SGAIYLDGKNLLTMPIKDM 74
Cdd:PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAgDLTGGGaprgarvTGDVTLNGEPLAAIDAPRL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 75 ACELGVVSQFNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLA 154
Cdd:PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 155 Q---------QVKLLILDEPTNHLDIKYQIQILNLVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKD 221
Cdd:PRK13547 162 QlwpphdaaqPPRYLLLDEPTAALDLAHQHRLLDTVRRLardwNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPAD 241
|
250
....*....|.
gi 499411747 222 ILTSQLIKEVY 232
Cdd:PRK13547 242 VLTPAHIARCY 252
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
3-232 |
6.04e-42 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 142.81 E-value: 6.04e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcELGV-- 80
Cdd:COG0410 4 LEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIA-RLGIgy 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIAFDIKVEDMVLMGRSPHKkmleqdneqDYKIAREMLEKV--------DMLNyakRSFSTLSGGEKQRVLLART 152
Cdd:COG0410 83 VPEGRRIFPSLTVEENLLLGAYARR---------DRAEVRADLERVyelfprlkERRR---QRAGTLSGGEQQMLAIGRA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 153 LAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIK 229
Cdd:COG0410 151 LMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNregVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVR 230
|
...
gi 499411747 230 EVY 232
Cdd:COG0410 231 EAY 233
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
24-249 |
6.91e-42 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 143.15 E-value: 6.91e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICkPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIAFDIKVEDMVLMGRSP 103
Cdd:PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 104 HkkmleQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQ-------QVKLLILDEPTNHLDIKYQI- 175
Cdd:PRK03695 97 K-----TRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdinpAGQLLLLDEPMNSLDVAQQAa 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 176 --QILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYEVDCKIHT-EQEPMYITF 249
Cdd:PRK03695 172 ldRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVNFRRLDvEGHPMLIST 248
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
3-222 |
5.92e-41 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 140.45 E-value: 5.92e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMacELGVVS 82
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKR--PVNTVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 Q----FNH------IAFDIKVedmvlmgrsphKKMLEQDNEQDYKiarEMLEKVDMLNYAKRSFSTLSGGEKQRVLLART 152
Cdd:cd03300 79 QnyalFPHltvfenIAFGLRL-----------KKLPKAEIKERVA---EALDLVQLEGYANRKPSQLSGGQQQRVAIARA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 153 LAQQVKLLILDEPTNHLDIK----YQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:cd03300 145 LVNEPKVLLLDEPLGALDLKlrkdMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
3-230 |
5.97e-41 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 141.41 E-value: 5.97e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQ--LGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP-IKDMACELG 79
Cdd:TIGR04520 1 IEVENVSFSypESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLDEEnLWEIRKKVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VV-----SQFnhIAfdIKVEDMVLMG----RSPHKKMLeqdneqdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLA 150
Cdd:TIGR04520 81 MVfqnpdNQF--VG--ATVEDDVAFGlenlGVPREEMR--------KRVDEALKLVGMEDFRDREPHLLSGGQKQRVAIA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 151 RTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNlAAAYCDKLYVMHNGNVVANGEPKDILT-S 225
Cdd:TIGR04520 149 GVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNkeegITVISITHDME-EAVLADRVIVMNKGKIVAEGTPREIFSqV 227
|
....*
gi 499411747 226 QLIKE 230
Cdd:TIGR04520 228 ELLKE 232
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
3-225 |
1.18e-39 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 137.05 E-value: 1.18e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNlLTMPIKDMA---CELG 79
Cdd:COG1126 2 IEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGED-LTDSKKDINklrRKVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQ-FNhiAFdikvedmvlmgrsPHKKMLE-----------QDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRV 147
Cdd:COG1126 81 MVFQqFN--LF-------------PHLTVLEnvtlapikvkkMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 148 LLARTLAQQVKLLILDEPTNHLD---IKyqiQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKD 221
Cdd:COG1126 146 AIARALAMEPKVMLFDEPTSALDpelVG---EVLDVMRDLakeGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEE 222
|
....
gi 499411747 222 ILTS 225
Cdd:COG1126 223 FFEN 226
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
18-200 |
1.23e-39 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 135.82 E-value: 1.23e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 18 VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGknlltmpikdmACELGVVSQFNHI--AFDIKVED 95
Cdd:NF040873 8 LHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG-----------GARVAYVPQRSEVpdSLPLTVRD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 96 MVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQI 175
Cdd:NF040873 77 LVAMGRWARRGLWRRLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAESRE 156
|
170 180
....*....|....*....|....*...
gi 499411747 176 QILNLVKSL---KTTAVVALHDLNLAAA 200
Cdd:NF040873 157 RIIALLAEEharGATVVVVTHDLELVRR 184
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
3-222 |
1.29e-39 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 136.93 E-value: 1.29e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRI-----CKPESGAIYLDGKNLLTMPIKDMA-- 75
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLndlipGAPDEGEVLLDGKDIYDLDVDVLElr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 76 CELGVVSQfNHIAFDIKVEDMVLMGRSPHKkmlEQDNEQDYKIAREMLEKVDMLNYAKR--SFSTLSGGEKQRVLLARTL 153
Cdd:cd03260 81 RRVGMVFQ-KPNPFPGSIYDNVAYGLRLHG---IKLKEELDERVEEALRKAALWDEVKDrlHALGLSGGQQQRLCLARAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499411747 154 AQQVKLLILDEPTNHLDIKYQIQILNLVKSLK--TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKkeYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
24-167 |
1.53e-39 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 133.93 E-value: 1.53e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIAFDIKVEDMVLMGRSP 103
Cdd:pfam00005 7 TLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENLRLGLLL 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 104 HKKMLEQDNEQDYKIaremLEKVDMLNYAKR----SFSTLSGGEKQRVLLARTLAQQVKLLILDEPTN 167
Cdd:pfam00005 87 KGLSKREKDARAEEA----LEKLGLGDLADRpvgeRPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
3-232 |
2.13e-39 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 136.13 E-value: 2.13e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcELGV-- 80
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRA-RLGIgy 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIAFDIKVEDMVLMGRSPHKKmleqDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:cd03218 80 LPQEASIFRKLTVEENILAVLEIRGL----SKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL---HDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVY 232
Cdd:cd03218 156 LLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLitdHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVY 230
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
3-225 |
2.56e-39 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 138.65 E-value: 2.56e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQL----GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKP---ESGAIYLDGKNLLTMPIKDM- 74
Cdd:COG0444 2 LEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKELr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 75 ---ACELGVVSQ--FNhiAFD--IKVEDMVLMGRSPHKKMleqDNEQDYKIAREMLEKVDmLNYAKRSFS----TLSGGE 143
Cdd:COG0444 82 kirGREIQMIFQdpMT--SLNpvMTVGDQIAEPLRIHGGL---SKAEARERAIELLERVG-LPDPERRLDryphELSGGM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 144 KQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNVVANGEP 219
Cdd:COG0444 156 RQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAIlfitHDLGVVAEIADRVAVMYAGRIVEEGPV 235
|
....*.
gi 499411747 220 KDILTS 225
Cdd:COG0444 236 EELFEN 241
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
3-215 |
4.54e-39 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 134.91 E-value: 4.54e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNK----KIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmPIKDMACEL 78
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGE-----PVTGPGPDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVSQfNHIAFDIK-VEDMVLMGRsphkKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQV 157
Cdd:cd03293 76 GYVFQ-QDALLPWLtVLDNVALGL----ELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 158 KLLILDEPTNHLD--IKYQIQ--ILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHN--GNVVA 215
Cdd:cd03293 151 DVLLLDEPFSALDalTREQLQeeLLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIVA 214
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
3-223 |
5.36e-39 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 134.87 E-value: 5.36e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcELGV-- 80
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA-RAGIgy 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIAFDIKVEDMVLMGRSPHKKmleqdneqdyKIAREMLEKV--------DMLnyaKRSFSTLSGGEKQRVLLART 152
Cdd:cd03224 80 VPEGRRIFPELTVEENLLLGAYARRR----------AKRKARLERVyelfprlkERR---KQLAGTLSGGEQQMLAIARA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 153 LAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRdegVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
3-233 |
1.15e-38 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 134.39 E-value: 1.15e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKiVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTM-PIKDmacELGVV 81
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLpPEKR---DISYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQfNHIAF-DIKVEDMVLMGRSPHKKMLEQDNEQDYKIArEMLEKVDMLNyakRSFSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:cd03299 77 PQ-NYALFpHMTVYKNIAYGLKKRKVDKKEIERKVLEIA-EMLGIDHLLN---RKPETLSGGEQQRVAIARALVVNPKIL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVK----SLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYE 233
Cdd:cd03299 152 LLDEPFSALDVRTKEKLREELKkirkEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAE 228
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
13-223 |
1.45e-38 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 142.28 E-value: 1.45e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIaFDIK 92
Cdd:COG2274 486 DSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRQIGVVLQDVFL-FSGT 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDMVLMGRSphkkmlEQDNEQdykiAREMLEKVDMLNYAKR-----------SFSTLSGGEKQRVLLARTLAQQVKLLI 161
Cdd:COG2274 565 IRENITLGDP------DATDEE----IIEAARLAGLHDFIEAlpmgydtvvgeGGSNLSGGQRQRLAIARALLRNPRILI 634
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 162 LDEPTNHLDIKYQIQILNLVKSL---KTTAVVAlHDLNLaAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:COG2274 635 LDEATSALDAETEAIILENLRRLlkgRTVIIIA-HRLST-IRLADRIIVLDKGRIVEDGTHEELL 697
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
18-226 |
1.14e-37 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 133.08 E-value: 1.14e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 18 VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIyldgkNLLTMPIKDMACE--LGVVSQFNHI--AFDIKV 93
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI-----SILGQPTRQALQKnlVAYVPQSEEVdwSFPVLV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 94 EDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKY 173
Cdd:PRK15056 98 EDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKT 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 174 QIQILNLVKSLK---TTAVVALHDLNLAAAYCDkLYVMHNGNVVANGEPKDILTSQ 226
Cdd:PRK15056 178 EARIISLLRELRdegKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASGPTETTFTAE 232
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
3-211 |
1.41e-37 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 129.81 E-value: 1.41e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGN--KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGV 80
Cdd:cd03228 1 IEFKNVSFSYPGrpKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQfnhiafdikveDMVLMGRSphkkmleqdneqdykIaREMLekvdmlnyakrsfstLSGGEKQRVLLARTLAQQVKLL 160
Cdd:cd03228 81 VPQ-----------DPFLFSGT---------------I-RENI---------------LSGGQRQRIAIARALLRDPPIL 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSL---KTTAVVAlHDLNLaAAYCDKLYVMHNG 211
Cdd:cd03228 119 ILDEATSALDPETEALILEALRALakgKTVIVIA-HRLST-IRDADRIIVLDDG 170
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
3-211 |
1.72e-37 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 129.61 E-value: 1.72e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACE--LGV 80
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRrrIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQfnhiafdikveDMVLMgrsPHKkmleqdneqdykiarEMLEKVDMLnyakrsfstLSGGEKQRVLLARTLAQQVKLL 160
Cdd:cd03229 81 VFQ-----------DFALF---PHL---------------TVLENIALG---------LSGGQQQRVALARALAMDPDVL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:cd03229 123 LLDEPTSALDPITRREVRALLKSLQaqlgITVVLVTHDLDEAARLADRVVVLRDG 177
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
13-226 |
1.84e-37 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 131.65 E-value: 1.84e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQ----FNHia 88
Cdd:cd03295 12 GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQqiglFPH-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 89 fdIKVEDMVlmGRSPhkKMLEQDNEQDYKIAREMLEKVDM--LNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPT 166
Cdd:cd03295 90 --MTVEENI--ALVP--KLLKWPKEKIRERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPF 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 167 NHLD----IKYQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQ 226
Cdd:cd03295 164 GALDpitrDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
3-223 |
3.12e-37 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 137.59 E-value: 3.12e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQL--GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGV 80
Cdd:COG4987 334 LELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRRIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIaFDIKVEDMVLMGRSphkkmlEQDNEQdykiAREMLEKV---DMLNYAKRSFST--------LSGGEKQRVLL 149
Cdd:COG4987 414 VPQRPHL-FDTTLRENLRLARP------DATDEE----LWAALERVglgDWLAALPDGLDTwlgeggrrLSGGERRRLAL 482
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 150 ARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSL---KTTaVVALHDLnLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:COG4987 483 ARALLRDAPILLLDEPTEGLDAATEQALLADLLEAlagRTV-LLITHRL-AGLERMDRILVLEDGRIVEQGTHEELL 557
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-229 |
4.57e-37 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 131.68 E-value: 4.57e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQLGN--KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELG 79
Cdd:PRK13635 5 IIRVEHISFRYPDaaTYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQFNHIAF-DIKVEDMVLMGRS----PHKKMLEQdneqdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLA 154
Cdd:PRK13635 85 MVFQNPDNQFvGATVQDDVAFGLEnigvPREEMVER--------VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 155 QQVKLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNlAAAYCDKLYVMHNGNVVANGEPKDI--LTSQLI 228
Cdd:PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKeqkgITVLSITHDLD-EAAQADRVIVMNKGEILEEGTPEEIfkSGHMLQ 235
|
.
gi 499411747 229 K 229
Cdd:PRK13635 236 E 236
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
3-222 |
7.39e-37 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 132.89 E-value: 7.39e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIK--DMAcelgV 80
Cdd:COG3839 4 LELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKdrNIA----M 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQF-----------NhIAFDIKVedmvlmgrsphKKMLEQDNEqdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLL 149
Cdd:COG3839 80 VFQSyalyphmtvyeN-IAFPLKL-----------RKVPKAEID---RRVREAAELLGLEDLLDRKPKQLSGGQRQRVAL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 150 ARTLAQQVKLLILDEPTNHLDIKYQIQ----ILNLVKSLKTTAVVALHD----LNLAaaycDKLYVMHNGNVVANGEPKD 221
Cdd:COG3839 145 GRALVREPKVFLLDEPLSNLDAKLRVEmraeIKRLHRRLGTTTIYVTHDqveaMTLA----DRIAVMNDGRIQQVGTPEE 220
|
.
gi 499411747 222 I 222
Cdd:COG3839 221 L 221
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1-222 |
1.89e-36 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 129.00 E-value: 1.89e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMacELGV 80
Cdd:cd03296 1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQER--NVGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQ----FNH------IAFDIKVedmvlmgrsphKKMLEQDNEQDYKI-AREMLEKVDMLNYAKRSFSTLSGGEKQRVLL 149
Cdd:cd03296 79 VFQhyalFRHmtvfdnVAFGLRV-----------KPRSERPPEAEIRAkVHELLKLVQLDWLADRYPAQLSGGQRQRVAL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 150 ARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHdelhVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
11-208 |
3.29e-36 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 127.94 E-value: 3.29e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 11 QLGNKKI--VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAI-YLDGKNLLtmpikDMAC----------- 76
Cdd:COG4778 18 LQGGKRLpvLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSIlVRHDGGWV-----DLAQaspreilalrr 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 -ELGVVSQFNHI-----AFDIKVEDMVLMGRSPhkkmleqdnEQDYKIAREMLEKvdmLNYAKRSFS----TLSGGEKQR 146
Cdd:COG4778 93 rTIGYVSQFLRViprvsALDVVAEPLLERGVDR---------EEARARARELLAR---LNLPERLWDlppaTFSGGEQQR 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 147 VLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT--TAVVA-LHDLNLAAAYCDKLYVM 208
Cdd:COG4778 161 VNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKArgTAIIGiFHDEEVREAVADRVVDV 225
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
3-211 |
3.63e-36 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 127.26 E-value: 3.63e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLL--TMPIKDMACELGV 80
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTddKKNINELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQ-FNhiAFdikvedmvlmgrsPHKKMLE-----------QDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVL 148
Cdd:cd03262 81 VFQqFN--LF-------------PHLTVLEnitlapikvkgMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVA 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 149 LARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLaeeGMTMVVVTHEMGFAREVADRVIFMDDG 211
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
3-226 |
4.12e-36 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 134.12 E-value: 4.12e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQL-GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVV 81
Cdd:COG4988 337 IELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQIAWV 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQFNHIaFDIKVEDMVLMGRSphkkmlEQDNEQdykiAREMLEKVDMLNYAKR-----------SFSTLSGGEKQRVLLA 150
Cdd:COG4988 417 PQNPYL-FAGTIRENLRLGRP------DASDEE----LEAALEAAGLDEFVAAlpdgldtplgeGGRGLSGGQAQRLALA 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 151 RTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK--TTAVVALHDLNLAAAyCDKLYVMHNGNVVANGEPKDILTSQ 226
Cdd:COG4988 486 RALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAkgRTVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEELLAKN 562
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
3-217 |
4.49e-36 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 126.92 E-value: 4.49e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFvGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKdMACELGVVS 82
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK-LRRRIGYLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIAFDIKVEDMV----LMGRSPHKKMLEQdneqdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVK 158
Cdd:cd03264 79 QEFGVYPNFTVREFLdyiaWLKGIPSKEVKAR--------VDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499411747 159 LLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL--HDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILstHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
18-225 |
6.65e-36 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 128.14 E-value: 6.65e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 18 VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDM----ACELGVVsqFNHIAfdikv 93
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELrelrRKKISMV--FQSFA----- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 94 edmvLMgrsPHKKMLE----------QDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILD 163
Cdd:cd03294 113 ----LL---PHRTVLEnvafglevqgVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 164 EPTNHLD--IKYQIQ--ILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTS 225
Cdd:cd03294 186 EAFSALDplIRREMQdeLLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
4-214 |
1.49e-35 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 125.45 E-value: 1.49e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 4 SVENINVQLG-NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLltmPIKDMACELGVVS 82
Cdd:cd03226 1 RIENISFSYKkGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI---KAKERRKSIGYVM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 Q-FNHIAFDIKVEDMVLMGrsphKKMLEQDNEQdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLI 161
Cdd:cd03226 78 QdVDYQLFTDSVREELLLG----LKELDAGNEQ----AETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 162 LDEPTNHLDIKYQIQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNGNVV 214
Cdd:cd03226 150 FDEPTSGLDYKNMERVGELIRELaaqGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
3-223 |
1.73e-35 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 126.02 E-value: 1.73e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIvhNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKD--MAcelgV 80
Cdd:COG3840 2 LRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAErpVS----M 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQ----FNHIAfdikVEDMVLMGRSPHKKMLEQDNEQdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQ 156
Cdd:COG3840 76 LFQennlFPHLT----VAQNIGLGLRPGLKLTAEQRAQ----VEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRK 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499411747 157 VKLLILDEPTNHLDIKYQIQILNLVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:COG3840 148 RPILLLDEPFSALDPALRQEMLDLVDELcrerGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALL 218
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-232 |
6.72e-35 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 124.76 E-value: 6.72e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTllkTIYRIC---KPESGAIYLDGKNLLTMPIKDMAcE 77
Cdd:COG1137 2 MTLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTT---TFYMIVglvKPDSGRIFLDGEDITHLPMHKRA-R 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 LGV--VSQFNHIAFDIKVED---MVLmgrsphkKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLART 152
Cdd:COG1137 78 LGIgyLPQEASIFRKLTVEDnilAVL-------ELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 153 LAQQVKLLILDE------PTNHLDIKyqiqilNLVKSLKTTAVVAL---HDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:COG1137 151 LATNPKFILLDEpfagvdPIAVADIQ------KIIRHLKERGIGVLitdHNVRETLGICDRAYIISEGKVLAEGTPEEIL 224
|
....*....
gi 499411747 224 TSQLIKEVY 232
Cdd:COG1137 225 NNPLVRKVY 233
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-211 |
8.16e-35 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 125.20 E-value: 8.16e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENIN----VQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmPIKDMAC 76
Cdd:COG1116 6 PALELRGVSkrfpTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGK-----PVTGPGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 ELGVVSQfNHIAFDIK-VEDMVLMGRsphkKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQ 155
Cdd:COG1116 81 DRGVVFQ-EPALLPWLtVLDNVALGL----ELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALAN 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 156 QVKLLILDEPTNHLDI--KYQIQ--ILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:COG1116 156 DPEVLLMDEPFGALDAltRERLQdeLLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
20-235 |
1.05e-34 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 125.10 E-value: 1.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 20 NACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVV-----SQFnhiaFDIKVE 94
Cdd:PRK13632 27 NVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIfqnpdNQF----IGATVE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 95 DMVLMG----RSPHKKMleqdneqdYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLD 170
Cdd:PRK13632 103 DDIAFGlenkKVPPKKM--------KDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 171 IKYQIQILNLVKSLKTTAVVAL----HDLNlAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYEVD 235
Cdd:PRK13632 175 PKGKREIKKIMVDLRKTRKKTLisitHDMD-EAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKID 242
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
5-211 |
1.05e-34 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 123.51 E-value: 1.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 5 VENINVQL---GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC---EL 78
Cdd:TIGR02673 2 IEFHNVSKaypGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLlrrRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVSQFNHIAFDIKVEDMVLMGrsphkkmLEQDNEQDYKIAR---EMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQ 155
Cdd:TIGR02673 82 GVVFQDFRLLPDRTVYENVALP-------LEVRGKKEREIQRrvgAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 156 QVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:TIGR02673 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNkrgTTVIVATHDLSLVDRVAHRVIILDDG 213
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
3-214 |
6.05e-34 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 127.87 E-value: 6.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLdGKNLltmpikdmacELGVVS 82
Cdd:COG0488 316 LELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETV----------KIGYFD 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QfNHIAFDikvedmvlmgrsPHKKMLE---QDNEQDYKI-AREMLEkvDML---NYAKRSFSTLSGGEKQRVLLARTLAQ 155
Cdd:COG0488 385 Q-HQEELD------------PDKTVLDelrDGAPGGTEQeVRGYLG--RFLfsgDDAFKPVGVLSGGEKARLALAKLLLS 449
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499411747 156 QVKLLILDEPTNHLDIKyQIQILNlvKSLKT---TAVVALHDLNLAAAYCDKLYVMHNGNVV 214
Cdd:COG0488 450 PPNVLLLDEPTNHLDIE-TLEALE--EALDDfpgTVLLVSHDRYFLDRVATRILEFEDGGVR 508
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1-222 |
7.28e-34 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 125.20 E-value: 7.28e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMacELGV 80
Cdd:PRK10851 1 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDR--KVGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQ----------FNHIAFDIKvedmVLMGRS-PHKKMLEQdneqdyKIAReMLEKVDMLNYAKRSFSTLSGGEKQRVLL 149
Cdd:PRK10851 79 VFQhyalfrhmtvFDNIAFGLT----VLPRRErPNAAAIKA------KVTQ-LLEMVQLAHLADRYPAQLSGGQKQRVAL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 150 ARTLAQQVKLLILDEPTNHLDIKYQIQ----ILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKElrrwLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
15-222 |
8.97e-34 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 123.23 E-value: 8.97e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 15 KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIK--DMACELGVVSQF-NHIAFDI 91
Cdd:PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKlsDIRKKVGLVFQYpEYQLFEE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 92 KVEDMVLMGrsPhKKMLEQDNEQDYKIAREM-LEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLD 170
Cdd:PRK13637 100 TIEKDIAFG--P-INLGLSEEEIENRVKRAMnIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 171 IKYQIQILNLVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK13637 177 PKGRDEILNKIKELhkeyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
3-232 |
1.10e-33 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 121.61 E-value: 1.10e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcELGVV- 81
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERA-RLGIGy 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 -SQFNHIAFDIKVED--MVLMGRSPhkkmlEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVK 158
Cdd:TIGR04406 81 lPQEASIFRKLTVEEniMAVLEIRK-----DLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 159 LLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL---HDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVY 232
Cdd:TIGR04406 156 FILLDEPFAGVDPIAVGDIKKIIKHLKERGIGVLitdHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRRVY 232
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
3-225 |
2.60e-33 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 126.34 E-value: 2.60e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGN----KKIVHNACIEVNKGEFVGLIGPNGSGKS-TLLKTI----YRICKPeSGAIYLDGKNLLTMPIKD 73
Cdd:COG4172 7 LSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSvTALSILrllpDPAAHP-SGSILFDGQDLLGLSERE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 MaCEL-GvvsqfNHIAFdIKVEDMV----LM--GR------SPHKKMLEQDNEQdykIAREMLEKVDMLNYAKR--SF-S 137
Cdd:COG4172 86 L-RRIrG-----NRIAM-IFQEPMTslnpLHtiGKqiaevlRLHRGLSGAAARA---RALELLERVGIPDPERRldAYpH 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 138 TLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNV 213
Cdd:COG4172 156 QLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALllitHDLGVVRRFADRVAVMRQGEI 235
|
250
....*....|..
gi 499411747 214 VANGEPKDILTS 225
Cdd:COG4172 236 VEQGPTAELFAA 247
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
23-224 |
3.57e-33 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 121.34 E-value: 3.57e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmPIKDMACELGVVSQFNHIAFD--------IKVE 94
Cdd:PRK13639 23 FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE-----PIKYDKKSLLEVRKTVGIVFQnpddqlfaPTVE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 95 DMVLMGrsPHKKMLEQDNEQdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQ 174
Cdd:PRK13639 98 EDVAFG--PLNLGLSKEEVE--KRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 499411747 175 IQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILT 224
Cdd:PRK13639 174 SQIMKLLYDLNkegITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
5-171 |
4.10e-33 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 125.56 E-value: 4.10e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 5 VENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmpikdmaCELGVVSQf 84
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKG-----------LRIGYLPQ- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 85 NHIAFDIK-VEDMVLMGRSPHKKMLEQ---------DNEQDYKIAREMLEKVDMLN--------------------YAKR 134
Cdd:COG0488 69 EPPLDDDLtVLDTVLDGDAELRALEAEleeleaklaEPDEDLERLAELQEEFEALGgweaearaeeilsglgfpeeDLDR 148
|
170 180 190
....*....|....*....|....*....|....*..
gi 499411747 135 SFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI 171
Cdd:COG0488 149 PVSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDL 185
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
3-222 |
6.34e-33 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 123.02 E-value: 6.34e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVS 82
Cdd:PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 Q--FNHIAfdikVEDMVLMGrsphkkmLEQDNEQDYKIA---REMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQV 157
Cdd:PRK11607 100 YalFPHMT----VEQNIAFG-------LKQDKLPKAEIAsrvNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 158 KLLILDEPTNHLDIK----YQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK11607 169 KLLLLDEPMGALDKKlrdrMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-200 |
7.92e-33 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 118.35 E-value: 7.92e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIkDMACELGV 80
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDARE-DYRRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIAFDIKVEDMVLMGRSPHKkmLEQDNEQdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:COG4133 80 LGHADGLKPELTVRENLRFWAALYG--LRADREA----IDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLW 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHD-LNLAAA 200
Cdd:COG4133 154 LLDEPFTALDAAGVALLAELIAAHLargGAVLLTTHQpLELAAA 197
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
3-223 |
8.16e-33 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 119.22 E-value: 8.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNAC----IEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC-- 76
Cdd:cd03258 2 IELKNVSKVFGDTGGKVTALkdvsLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKar 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 -ELGVVSQ-FN---------HIAFDIKVEdmvlmgrspHKKMLEQDneqdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQ 145
Cdd:cd03258 82 rRIGMIFQhFNllssrtvfeNVALPLEIA---------GVPKAEIE-----ERVLELLELVGLEDKADAYPAQLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 146 RVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVK----SLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKD 221
Cdd:cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRdinrELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
|
..
gi 499411747 222 IL 223
Cdd:cd03258 228 VF 229
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
3-213 |
9.17e-33 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 117.32 E-value: 9.17e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKK--IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGV 80
Cdd:cd03246 1 LEVENVSFRYPGAEppVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQfnhiafdikvEDMVLMGrsphkkmleqdneqdyKIAREMLekvdmlnyakrsfstlSGGEKQRVLLARTLAQQVKLL 160
Cdd:cd03246 81 LPQ----------DDELFSG----------------SIAENIL----------------SGGQRQRLGLARALYGNPRIL 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAyCDKLYVMHNGNV 213
Cdd:cd03246 119 VLDEPNSHLDVEGERALNQAIAALKaagATRIVIAHRPETLAS-ADRILVLEDGRV 173
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
3-214 |
1.04e-32 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 118.51 E-value: 1.04e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMacELGVVS 82
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDR--DIAMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 Q----------FNHIAFDIKVedmvlmgrsphKKMLEQDNEQDYKIAREMLEKVDMLNyakRSFSTLSGGEKQRVLLART 152
Cdd:cd03301 79 QnyalyphmtvYDNIAFGLKL-----------RKVPKDEIDERVREVAELLQIEHLLD---RKPKQLSGGQRQRVALGRA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 153 LAQQVKLLILDEPTNHLDIKYQIQ----ILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVV 214
Cdd:cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQmraeLKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
5-213 |
2.18e-32 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 117.51 E-value: 2.18e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 5 VENINVQL---GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC---EL 78
Cdd:cd03292 1 IEFINVTKtypNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYlrrKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVSQFNHIAFDIKVED-----MVLMGRSPhkkmleqdnEQDYKIAREMLEKVDmLNYAKRSF-STLSGGEKQRVLLART 152
Cdd:cd03292 81 GVVFQDFRLLPDRNVYEnvafaLEVTGVPP---------REIRKRVPAALELVG-LSHKHRALpAELSGGEQQRVAIARA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 153 LAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNV 213
Cdd:cd03292 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKKINkagTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
3-232 |
2.36e-31 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 115.76 E-value: 2.36e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACE-LGVV 81
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRgIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQFNHIAFDIKVEDMvLMGRSPHKKMLEQDNEQDYkiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLI 161
Cdd:PRK10895 84 PQEASIFRRLSVYDN-LMAVLQIRDDLSAEQREDR--ANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 162 LDEPTNHLDIKYQIQILNLVKSLKTTAVVAL---HDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVY 232
Cdd:PRK10895 161 LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLitdHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVY 234
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
23-217 |
3.07e-31 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 114.51 E-value: 3.07e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAceLGVVSQFNHIAFDIKVEDMVLMGRS 102
Cdd:cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP--VSMLFQENNLFAHLTVEQNVGLGLS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 103 PHKKMLEQDNEQDYKIAREMlekvDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVK 182
Cdd:cd03298 97 PGLKLTAEDRQAIEVALARV----GLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL 172
|
170 180 190
....*....|....*....|....*....|....*....
gi 499411747 183 SL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03298 173 DLhaetKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
7-230 |
4.13e-31 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 115.19 E-value: 4.13e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 7 NINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLL--TMPIKDMACELGVV-SQ 83
Cdd:PRK09493 6 NVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNdpKVDERLIRQEAGMVfQQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 84 FNHIAFDIKVEDmVLMGRSPHKKMLEQDNEqdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILD 163
Cdd:PRK09493 86 FYLFPHLTALEN-VMFGPLRVRGASKEEAE---KQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499411747 164 EPTNHLDIKYQIQILNLVKSLKT---TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILT---SQLIKE 230
Cdd:PRK09493 162 EPTSALDPELRHEVLKVMQDLAEegmTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKnppSQRLQE 234
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
13-225 |
4.40e-31 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 115.67 E-value: 4.40e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC---ELGVVSQFNHIAF 89
Cdd:TIGR02769 22 QRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAfrrDVQLVFQDSPSAV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 DIK--VEDMVlmgRSPHKKMLEQD-NEQDYKIArEMLEKVDM-LNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEP 165
Cdd:TIGR02769 102 NPRmtVRQII---GEPLRHLTSLDeSEQKARIA-ELLDMVGLrSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 166 TNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTS 225
Cdd:TIGR02769 178 VSNLDMVLQAVILELLRKLQqafgTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSF 241
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
3-222 |
1.40e-30 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 115.21 E-value: 1.40e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmPIKDmacelgvvS 82
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGE-----PLDP--------E 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIAF---------DIKVEDMV-----LMGRSPHKKMleqdneqdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVL 148
Cdd:COG4152 69 DRRRIGYlpeerglypKMKVGEQLvylarLKGLSKAEAK---------RRADEWLERLGLGDRANKKVEELSKGNQQKVQ 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 149 LARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:COG4152 140 LIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAakgTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEI 216
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
13-217 |
1.62e-30 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 118.73 E-value: 1.62e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIaFDIK 92
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQIGVVPQDTFL-FSGT 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDMVLMGRsphkkmLEQDNEQDYKIAR--EMLEKVDMLN--Y----AKRSfSTLSGGEKQRVLLARTLAQQVKLLILDE 164
Cdd:COG1132 430 IRENIRYGR------PDATDEEVEEAAKaaQAHEFIEALPdgYdtvvGERG-VNLSGGQRQRIAIARALLKDPPILILDE 502
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 165 PTNHLDIK--YQIQ--ILNLVKSlKTTAVVAlHDLNLAAAyCDKLYVMHNGNVVANG 217
Cdd:COG1132 503 ATSALDTEteALIQeaLERLMKG-RTTIVIA-HRLSTIRN-ADRILVLDDGRIVEQG 556
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
13-220 |
1.80e-30 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 112.60 E-value: 1.80e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcELGVVSQFNHIAFDIK 92
Cdd:cd03263 13 GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQ-SLGYCPQFDALFDELT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VED-MVLMGRSPHKKMLEQDNEQDykiarEMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI 171
Cdd:cd03263 92 VREhLRFYARLKGLPKSEIKEEVE-----LLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 499411747 172 KYQIQILNLVKSLKTTAVVAL--HDLNLAAAYCDKLYVMHNGNVVANGEPK 220
Cdd:cd03263 167 ASRRAIWDLILEVRKGRSIILttHSMDEAEALCDRIAIMSDGKLRCIGSPQ 217
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
3-217 |
2.18e-30 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 112.37 E-value: 2.18e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC---ELG 79
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYlpeERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 ------VVSQFNHIAfdiKVEDMvlmgrsPHKKMLEQdneqdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTL 153
Cdd:cd03269 81 lypkmkVIDQLVYLA---QLKGL------KKEEARRR--------IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAV 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 154 AQQVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELAragKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
15-231 |
5.27e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 113.36 E-value: 5.27e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 15 KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGA---IYLDGKNLLTMPIKDMACELGVVSQFNHIAF-D 90
Cdd:PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskITVDGITLTAKTVWDIREKVGIVFQNPDNQFvG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 91 IKVEDMVLMG----RSPHKKMLeqdneqdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPT 166
Cdd:PRK13640 100 ATVGDDVAFGlenrAVPRPEMI--------KIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDEST 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 167 NHLDIKYQIQILNLVKSLKT----TAVVALHDLNlAAAYCDKLYVMHNGNVVANGEPKDILT-SQLIKEV 231
Cdd:PRK13640 172 SMLDPAGKEQILKLIRKLKKknnlTVISITHDID-EANMADQVLVLDDGKLLAQGSPVEIFSkVEMLKEI 240
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
3-234 |
8.21e-30 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 113.36 E-value: 8.21e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmPIKDMA----CEL 78
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGE-----PVPSRArharQRV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVSQFNHIAFDIKV-EDMVLMGRsphkkMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQV 157
Cdd:PRK13537 83 GVVPQFDNLDPDFTVrENLLVFGR-----YFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 158 KLLILDEPTNHLDIKYQIQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYEV 234
Cdd:PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLlarGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEI 237
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
3-233 |
9.17e-30 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 111.70 E-value: 9.17e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTI-----YRIckpESGAIYLDGKNLLTMPIKDMACE 77
Cdd:COG0396 1 LEIKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLmghpkYEV---TSGSILLDGEDILELSPDERARA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 ---L---------GV-VSQFNHIAFDIKVEDmvlmgrsphkkmlEQDNEQDYKIAREMLEKVDM-LNYAKRS-FSTLSGG 142
Cdd:COG0396 78 gifLafqypveipGVsVSNFLRTALNARRGE-------------ELSAREFLKLLKEKMKELGLdEDFLDRYvNEGFSGG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 143 EKQRVLLARTLAQQVKLLILDEPTNHLDI---KYQIQILNLVKSLKTTAVVALHD---LNLAAAycDKLYVMHNGNVVAN 216
Cdd:COG0396 145 EKKRNEILQMLLLEPKLAILDETDSGLDIdalRIVAEGVNKLRSPDRGILIITHYqriLDYIKP--DFVHVLVDGRIVKS 222
|
250
....*....|....*..
gi 499411747 217 GEPKdiLTSQLIKEVYE 233
Cdd:COG0396 223 GGKE--LALELEEEGYD 237
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
3-211 |
1.81e-29 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 107.92 E-value: 1.81e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGaiyldgknlltMPIKDMACELGVVS 82
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-----------IVTWGSTVKIGYFE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QfnhiafdikvedmvlmgrsphkkmleqdneqdykiaremlekvdmlnyakrsfstLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:cd03221 70 Q-------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLL 94
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 499411747 163 DEPTNHLDIKYQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:cd03221 95 DEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDG 143
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
23-231 |
5.97e-29 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 111.71 E-value: 5.97e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC---ELGVVSQ-FN---------HIAF 89
Cdd:COG1135 26 LTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAarrKIGMIFQhFNllssrtvaeNVAL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 DIKvedmvLMGRSPhkkmleqdNEQDYKIArEMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHL 169
Cdd:COG1135 106 PLE-----IAGVPK--------AEIRKRVA-ELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499411747 170 DIKYQIQILNLVKS----LKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI-------LTSQLIKEV 231
Cdd:COG1135 172 DPETTRSILDLLKDinreLGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVfanpqseLTRRFLPTV 244
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
5-219 |
1.10e-28 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 108.23 E-value: 1.10e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 5 VENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPiKDMACELGVVSQf 84
Cdd:cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRRIGIVFQ- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 85 nhiafDIKVED-------MVLMGRSPHKKMLEQDNEqdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQV 157
Cdd:cd03265 81 -----DLSVDDeltgwenLYIHARLYGVPGAERRER-----IDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 158 KLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEP 219
Cdd:cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKeefgMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTP 216
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
5-204 |
2.03e-28 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 106.93 E-value: 2.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 5 VENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNllTMPIKDMAcelgvVSQF 84
Cdd:TIGR03608 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQE--TPPLNSKK-----ASKF 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 85 --NHIAF---------DIKVEDMVLMGRSpHKKMLEQDNEQDYKiarEMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTL 153
Cdd:TIGR03608 74 rrEKLGYlfqnfalieNETVEENLDLGLK-YKKLSKKEKREKKK---EALEKVGLNLKLKQKIYELSGGEQQRVALARAI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 499411747 154 AQQVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAyCDK 204
Cdd:TIGR03608 150 LKPPPLILADEPTGSLDPKNRDEVLDLLLELNdegKTIIIVTHDPEVAKQ-ADR 202
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
3-217 |
3.25e-28 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 105.86 E-value: 3.25e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLG--NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPiKDMACELGV 80
Cdd:cd03247 1 LSINNVSFSYPeqEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE-KALSSLISV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIaFDIKVEDmvlmgrsphkkmleqdneqdykiaremlekvdmlNYAKRsfstLSGGEKQRVLLARTLAQQVKLL 160
Cdd:cd03247 80 LNQRPYL-FDTTLRN----------------------------------NLGRR----FSGGERQRLALARILLQDAPIV 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 161 ILDEPTNHLDIKYQIQILNLV-KSLK-TTAVVALHDLnLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03247 121 LLDEPTVGLDPITERQLLSLIfEVLKdKTLIWITHHL-TGIEHMDKILFLENGKIIMQG 178
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
18-217 |
3.50e-28 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 106.91 E-value: 3.50e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 18 VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIaFDIKVEDMV 97
Cdd:cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTL-FYGTLRDNI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 98 LMGRSPHK--KMLEqdneqdykiAREMLEKVDMLNYAKRSFST--------LSGGEKQRVLLARTLAQQVKLLILDEPTN 167
Cdd:cd03245 99 TLGAPLADdeRILR---------AAELAGVTDFVNKHPNGLDLqigergrgLSGGQRQAVALARALLNDPPILLLDEPTS 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 499411747 168 HLDIKYQIQILNLVKSLK--TTAVVALHDLNLaAAYCDKLYVMHNGNVVANG 217
Cdd:cd03245 170 AMDMNSEERLKERLRQLLgdKTLIIITHRPSL-LDLVDRIIVMDSGRIVADG 220
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
5-225 |
3.74e-28 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 107.53 E-value: 3.74e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 5 VENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPES-----GAIYLDGKNLLTMP---IKDMAC 76
Cdd:PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAgtirvGDITIDTARSLSQQkglIRQLRQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 ELGVVSQ-FNHIafdikvedmvlmgrsPHKKMLE-----------QDNEQDYKIAREMLEKVDMLN----YAKRsfstLS 140
Cdd:PRK11264 86 HVGFVFQnFNLF---------------PHRTVLEniiegpvivkgEPKEEATARARELLAKVGLAGketsYPRR----LS 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 141 GGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:PRK11264 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLaqeKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
....*...
gi 499411747 218 EPKDILTS 225
Cdd:PRK11264 227 PAKALFAD 234
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
3-217 |
4.01e-28 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 106.15 E-value: 4.01e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNL--LTMPIKDMACELGV 80
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYqkNIEALRRIGALIEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIAfdiKVEDMVLMGRSPHKKmleqdneqdYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:cd03268 81 PGFYPNLT---ARENLRLLARLLGIR---------KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLL 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03268 149 ILDEPTNGLDPDGIKELRELILSLRdqgITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-216 |
7.87e-28 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 104.05 E-value: 7.87e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDmACELGV-- 80
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD-ARRAGIam 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQfnhiafdikvedmvlmgrsphkkmleqdneqdykiaremlekvdmlnyakrsfstLSGGEKQRVLLARTLAQQVKLL 160
Cdd:cd03216 80 VYQ-------------------------------------------------------LSVGERQMVEIARALARNARLL 104
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSLKT--TAVVAL-HDLNLAAAYCDKLYVMHNGNVVAN 216
Cdd:cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAqgVAVIFIsHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
1-223 |
1.18e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 107.48 E-value: 1.18e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENInVQLGNKKI------VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAI---YLDGKNLLTMP- 70
Cdd:PRK13651 1 MQIKVKNI-VKIFNKKLptelkaLDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIewiFKDEKNKKKTKe 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 71 --------------------IKDMACELGVVSQF-NHIAFDIKVEDMVLMG-RSphkkmLEQDNEQDYKIAREMLEKVDM 128
Cdd:PRK13651 80 kekvleklviqktrfkkikkIKEIRRRVGVVFQFaEYQLFEQTIEKDIIFGpVS-----MGVSKEEAKKRAAKYIELVGL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 129 -LNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT---TAVVALHDLNLAAAYCDK 204
Cdd:PRK13651 155 dESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKqgkTIILVTHDLDNVLEWTKR 234
|
250
....*....|....*....
gi 499411747 205 LYVMHNGNVVANGEPKDIL 223
Cdd:PRK13651 235 TIFFKDGKIIKDGDTYDIL 253
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-234 |
1.19e-27 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 108.38 E-value: 1.19e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIyldgkNLLTMPIKDMA----C 76
Cdd:PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI-----TVLGVPVPARArlarA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 ELGVVSQFNHIAFDIKV-EDMVLMGRspHKKMLEQDNEQdykIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQ 155
Cdd:PRK13536 115 RIGVVPQFDNLDLEFTVrENLLVFGR--YFGMSTREIEA---VIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 156 QVKLLILDEPTNHLDIKYQIQILNLVKSLKT---TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVY 232
Cdd:PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLArgkTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVI 269
|
..
gi 499411747 233 EV 234
Cdd:PRK13536 270 EI 271
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
14-222 |
1.21e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 106.74 E-value: 1.21e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 14 NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIAF-DIK 92
Cdd:PRK13650 19 EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFvGAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDMVLMGRS----PHKKMLEQDNEQdykiaremLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNH 168
Cdd:PRK13650 99 VEDDVAFGLEnkgiPHEEMKERVNEA--------LELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 169 LDIKYQIQILNLVKSLKT----TAVVALHDLNlAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK13650 171 LDPEGRLELIKTIKGIRDdyqmTVISITHDLD-EVALSDRVLVMKNGQVESTSTPREL 227
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
3-200 |
1.37e-27 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 104.87 E-value: 1.37e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPE---SGAIYLDGKNLLTMPIKDMAceLG 79
Cdd:COG4136 2 LSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTALPAEQRR--IG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQ----FNH------IAFDIKVEdmvlMGRSPHKKMLEQdneqdykiareMLEKVDMLNYAKRSFSTLSGGEKQRVLL 149
Cdd:COG4136 80 ILFQddllFPHlsvgenLAFALPPT----IGRAQRRARVEQ-----------ALEEAGLAGFADRDPATLSGGQRARVAL 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 150 ARTLAQQVKLLILDEPTNHLDIKYQIQILNLV----KSLKTTAVVALHDLNLAAA 200
Cdd:COG4136 145 LRALLAEPRALLLDEPFSKLDAALRAQFREFVfeqiRQRGIPALLVTHDEEDAPA 199
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-229 |
1.51e-27 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 109.72 E-value: 1.51e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDmACELGV-- 80
Cdd:COG1129 5 LEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRD-AQAAGIai 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQdYKIAREMLEKVDM-LNyAKRSFSTLSGGEKQRVLLARTLAQQVKL 159
Cdd:COG1129 84 IHQELNLVPNLSVAENIFLGREPRRGGLIDWRAM-RRRARELLARLGLdID-PDTPVGDLSVAQQQLVEIARALSRDARV 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 160 LILDEPTNHLDIKyQIQIL-NLVKSLKTTAVVAL---HDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIK 229
Cdd:COG1129 162 LILDEPTASLTER-EVERLfRIIRRLKAQGVAIIyisHRLDEVFEIADRVTVLRDGRLVGTGPVAELTEDELVR 234
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
3-225 |
1.58e-27 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 110.16 E-value: 1.58e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINV-----------QLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRIcKPESGAIYLDGKNLLTMPI 71
Cdd:COG4172 276 LEARDLKVwfpikrglfrrTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRL-IPSEGEIRFDGQDLDGLSR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 72 KDMA---CELGVVSQ-----FN--HIAFDIKVEDMVLMGRSPHKKMLEQdneqdykIAREMLEKV----DMLNyakRSFS 137
Cdd:COG4172 355 RALRplrRRMQVVFQdpfgsLSprMTVGQIIAEGLRVHGPGLSAAERRA-------RVAEALEEVgldpAARH---RYPH 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 138 TLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNV 213
Cdd:COG4172 425 EFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYlfisHDLAVVRALAHRVMVMKDGKV 504
|
250
....*....|..
gi 499411747 214 VANGEPKDILTS 225
Cdd:COG4172 505 VEQGPTEQVFDA 516
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
3-215 |
2.02e-27 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 105.21 E-value: 2.02e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKK----IVHNACIEVNKGEFVGLIGPNGSGKSTLLktiyRIC----KPESGAIYLDGKNLLTMPIKDM 74
Cdd:COG4181 9 IELRGLTKTVGTGAgeltILKGISLEVEAGESVAIVGASGSGKSTLL----GLLagldRPTSGTVRLAGQDLFALDEDAR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 75 AC----ELGVVSQFNHiafdikvedmvLMgrsPHKKMLE--------QDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGG 142
Cdd:COG4181 85 ARlrarHVGFVFQSFQ-----------LL---PTLTALEnvmlplelAGRRDARARARALLERVGLGHRLDHYPAQLSGG 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 143 EKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAyCDKLYVMHNGNVVA 215
Cdd:COG4181 151 EQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNrergTTLVLVTHDPALAAR-CDRVLRLRAGRLVE 226
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
16-223 |
2.30e-27 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 105.31 E-value: 2.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 16 KIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIaFDIKVED 95
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVL-FDGTIAE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 96 MVLMGR-SPHKKMLEQDNEQD--YKIAREMLEKVDMLNYAKRsfSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIK 172
Cdd:cd03249 96 NIRYGKpDATDEEVEEAAKKAniHDFIMSLPDGYDTLVGERG--SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 499411747 173 YQIQI---LNLVKSLKTTAVVAlHDLNlAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:cd03249 174 SEKLVqeaLDRAMKGRTTIVIA-HRLS-TIRNADLIAVLQNGQVVEQGTHDELM 225
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
14-223 |
3.50e-27 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 104.62 E-value: 3.50e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 14 NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQ----FNH-IA 88
Cdd:cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQdtvlFNDtIG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 89 FDIKvedmvlMGRsphkkmLEQDNEQDYKIAR--EMLEKVDMLNYAkrsFST--------LSGGEKQRVLLARTLAQQVK 158
Cdd:cd03253 93 YNIR------YGR------PDATDEEVIEAAKaaQIHDKIMRFPDG---YDTivgerglkLSGGEKQRVAIARAILKNPP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 159 LLILDEPTNHLDIKYQIQILNLVKSL---KTTAVVAlHDLNlAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:cd03253 158 ILLLDEATSALDTHTEREIQAALRDVskgRTTIVIA-HRLS-TIVNADKIIVLKDGRIVERGTHEELL 223
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
25-217 |
4.01e-27 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 103.99 E-value: 4.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 25 VNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIkDMACELGVVSQFNHIAFDIKVEDMV-----LM 99
Cdd:cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA-EARRRLGFVSDSTGLYDRLTARENLeyfagLY 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 100 GRSPHkkmleqdnEQDYKIaREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILN 179
Cdd:cd03266 107 GLKGD--------ELTARL-EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 499411747 180 LVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03266 178 FIRQLRalgKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-223 |
4.29e-27 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 104.23 E-value: 4.29e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQLGNKKIV-HNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGV 80
Cdd:cd03254 2 EIEFENVNFSYDEKKPVlKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIaFDIKVEDMVLMGRSPHKkmlEQDNEQDYKIAR-----EMLEKvDMLNYAKRSFSTLSGGEKQRVLLARTLAQ 155
Cdd:cd03254 82 VLQDTFL-FSGTIMENIRLGRPNAT---DEEVIEAAKEAGahdfiMKLPN-GYDTVLGENGGNLSQGERQLLAIARAMLR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499411747 156 QVKLLILDEPTNHLDIKYQIQILNLVKSL---KTTAVVAlHDLNlAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKLmkgRTSIIIA-HRLS-TIKNADKILVLDDGKIIEEGTHDELL 225
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
27-226 |
5.77e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 104.83 E-value: 5.77e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 27 KGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVV-----SQF--NHIAFDIK--VEDMV 97
Cdd:PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVfqnpdNQFvgSIVKYDVAfgLENHA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 98 LmgrsPHKKMLEqdneqdykIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQI 177
Cdd:PRK13648 114 V----PYDEMHR--------RVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 499411747 178 LNLVKSLKTTAVVAL----HDLNlAAAYCDKLYVMHNGNVVANGEPKDILTSQ 226
Cdd:PRK13648 182 LDLVRKVKSEHNITIisitHDLS-EAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
3-222 |
7.21e-27 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 104.30 E-value: 7.21e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcELGVVS 82
Cdd:PRK11300 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA-RMGVVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHI--------------AFDIKVEDMVLMG-------RSPHKKMLEQdneqdykiAREMLEKVDMLNYAKRSFSTLSG 141
Cdd:PRK11300 85 TFQHVrlfremtvienllvAQHQQLKTGLFSGllktpafRRAESEALDR--------AATWLERVGLLEHANRQAGNLAY 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 142 GEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVllieHDMKLVMGISDRIYVVNQGTPLANG 236
|
....*
gi 499411747 218 EPKDI 222
Cdd:PRK11300 237 TPEEI 241
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
3-222 |
8.02e-27 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 105.96 E-value: 8.02e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMacELGVVS 82
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR--DICMVF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 Q----FNHIAfdikVEDMVLMGRsphkKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVK 158
Cdd:PRK11432 85 QsyalFPHMS----LGENVGYGL----KMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 159 LLILDEPTNHLDIKYQI----QILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK11432 157 VLLFDEPLSNLDANLRRsmreKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
17-198 |
8.24e-27 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 103.74 E-value: 8.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 17 IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC----ELGVVSQFNHIAFDIK 92
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAElrnqKLGFIYQFHHLLPDFT 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDMVLMGRSPHKKMLEQDNEQdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIK 172
Cdd:PRK11629 104 ALENVAMPLLIGKKKPAEINSR----ALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDAR 179
|
170 180 190
....*....|....*....|....*....|
gi 499411747 173 YQIQILNLVKSLK----TTAVVALHDLNLA 198
Cdd:PRK11629 180 NADSIFQLLGELNrlqgTAFLVVTHDLQLA 209
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
3-222 |
9.52e-27 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 105.58 E-value: 9.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQL----GNKKIVHNACIEVNKGEFVGLIGPNGSGKST-------LLKTIYRIckpeSGAIYLDGKNLLTMPI 71
Cdd:PRK09473 13 LDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSQtafalmgLLAANGRI----GGSATFNGREILNLPE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 72 KDM----ACELGVVSQFNHIAFD--IKVEDM---VLMgrsPHKKMleqDNEQDYKIAREMLEKVDMLNYAKR------SF 136
Cdd:PRK09473 89 KELnklrAEQISMIFQDPMTSLNpyMRVGEQlmeVLM---LHKGM---SKAEAFEESVRMLDAVKMPEARKRmkmyphEF 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 137 StlsGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVAL-HDLNLAAAYCDKLYVMHNGN 212
Cdd:PRK09473 163 S---GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKrefNTAIIMItHDLGVVAGICDKVLVMYAGR 239
|
250
....*....|
gi 499411747 213 VVANGEPKDI 222
Cdd:PRK09473 240 TMEYGNARDV 249
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
27-217 |
1.09e-26 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 102.76 E-value: 1.09e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 27 KGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNL------LTMPIKDMAceLGVVSQ----FNH------IAFD 90
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLfdsrkkINLPPQQRK--IGLVFQqyalFPHlnvrenLAFG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 91 IKVedmvlmgrsphkkmleQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLD 170
Cdd:cd03297 100 LKR----------------KRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 499411747 171 --IKYQIQIL--NLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03297 164 raLRLQLLPElkQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
3-228 |
1.21e-26 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 107.60 E-value: 1.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRI--CKPESGAIYLDGKNLLTMPIKDM-ACELG 79
Cdd:TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVypHGTWDGEIYWSGSPLKASNIRDTeRAGIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQFNHIAFDIKVEDMVLMGRS-PHKKMLEQDNEQdYKIAREMLE--KVDMLNYAkRSFSTLSGGEKQRVLLARTLAQQ 156
Cdd:TIGR02633 82 IIHQELTLVPELSVAENIFLGNEiTLPGGRMAYNAM-YLRAKNLLRelQLDADNVT-RPVGDYGGGQQQLVEIAKALNKQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 157 VKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL---HDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLI 228
Cdd:TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVyisHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDII 234
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
2-223 |
1.22e-26 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 107.53 E-value: 1.22e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQL--GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELG 79
Cdd:COG4618 330 RLSVENLTVVPpgSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRHIG 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQfnHIA-FDIKVEDmvlmgrsphkkmleqdNeqdykIARemLEKVDM---LNYAKR--------SF----------- 136
Cdd:COG4618 410 YLPQ--DVElFDGTIAE----------------N-----IAR--FGDADPekvVAAAKLagvhemilRLpdgydtrigeg 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 137 -STLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDikYQ-----IQILNLVKSLKTTAVVALHDLNLAAAyCDKLYVMHN 210
Cdd:COG4618 465 gARLSGGQRQRIGLARALYGDPRLVVLDEPNSNLD--DEgeaalAAAIRALKARGATVVVITHRPSLLAA-VDKLLVLRD 541
|
250
....*....|...
gi 499411747 211 GNVVANGEPKDIL 223
Cdd:COG4618 542 GRVQAFGPRDEVL 554
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
3-217 |
1.39e-26 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 103.08 E-value: 1.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKK--IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGV 80
Cdd:cd03251 1 VEFKNVTFRYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIaFDIKVEDMVLMGRSphkkmlEQDNEQDYKIAR---------EMLEKVDMlNYAKRSfSTLSGGEKQRVLLAR 151
Cdd:cd03251 81 VSQDVFL-FNDTVAENIAYGRP------GATREEVEEAARaanahefimELPEGYDT-VIGERG-VKLSGGQRQRIAIAR 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 152 TLAQQVKLLILDEPTNHLDI--KYQIQ--ILNLVKSlKTTAVVAlHDLNlAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03251 152 ALLKDPPILILDEATSALDTesERLVQaaLERLMKN-RTTFVIA-HRLS-TIENADRIVVLEDGKIVERG 218
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
20-222 |
1.56e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 104.33 E-value: 1.56e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 20 NACIEvnKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYL---------DGKNLltmpiKDMACELGVVSQF-NHIAF 89
Cdd:PRK13634 27 NVSIP--SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIgervitagkKNKKL-----KPLRKKVGIVFQFpEHQLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 DIKVEDMVLMGrsPHK-KMLEQDNEqdyKIAREMLEKV----DMLNyakRSFSTLSGGEKQRVLLARTLAQQVKLLILDE 164
Cdd:PRK13634 100 EETVEKDICFG--PMNfGVSEEDAK---QKAREMIELVglpeELLA---RSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499411747 165 PTNHLDIKYQIQILNLVKSLKT----TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK13634 172 PTAGLDPKGRKEMMEMFYKLHKekglTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
3-232 |
1.70e-26 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 103.11 E-value: 1.70e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTI-----YRICkpeSGAIYLDGKNLLTMPIKDMAcE 77
Cdd:TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIaghpsYEVT---SGTILFKGQDLLELEPDERA-R 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 LGVVsqfnhIAFDIKVE----DMVLMGRSPHKKMLEQDNEQD------YKIAREMLEKVDM-LNYAKRSFST-LSGGEKQ 145
Cdd:TIGR01978 77 AGLF-----LAFQYPEEipgvSNLEFLRSALNARRSARGEEPldlldfEKLLKEKLALLDMdEEFLNRSVNEgFSGGEKK 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 146 RVLLARTLAQQVKLLILDEPTNHLDI---KYQIQILNLVKSLKTTAVVALHDLNLAAAYC-DKLYVMHNGNVVANGEPKd 221
Cdd:TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIdalKIVAEGINRLREPDRSFLIITHYQRLLNYIKpDYVHVLLDGRIVKSGDVE- 230
|
250
....*....|.
gi 499411747 222 iLTSQLIKEVY 232
Cdd:TIGR01978 231 -LAKELEAKGY 240
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
3-225 |
2.15e-26 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 104.60 E-value: 2.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVEnINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPE----SGAIYLDGKNLLTMPIKD----M 74
Cdd:COG4170 9 LTIE-IDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNwhvtADRFRWNGIDLLKLSPRErrkiI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 75 ACELGVVSQFNHIAFD--IKVEDMVL--MGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAK--RSFS-TLSGGEKQRV 147
Cdd:COG4170 88 GREIAMIFQEPSSCLDpsAKIGDQLIeaIPSWTFKGKWWQRFKWRKKRAIELLHRVGIKDHKDimNSYPhELTEGECQKV 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 148 LLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:COG4170 168 MIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLnqlqGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQIL 247
|
..
gi 499411747 224 TS 225
Cdd:COG4170 248 KS 249
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
3-233 |
2.47e-26 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 101.45 E-value: 2.47e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTI-----YRICKpesGAIYLDGKNLLTMPIKDMAcE 77
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTImghpkYEVTE---GEILFKGEDITDLPPEERA-R 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 LGVVsqfnhIAFDIKVEdmvlmgrsphkkmleqdneqdykiaremLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQV 157
Cdd:cd03217 77 LGIF-----LAFQYPPE----------------------------IPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEP 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 158 KLLILDEPTNHLDIKYQIQILNLVKSL---KTTAVVALHDLNLAAAY-CDKLYVMHNGNVVANGEPKdiltsqLIKEVYE 233
Cdd:cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLreeGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDKE------LALEIEK 197
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
3-180 |
2.86e-26 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 102.86 E-value: 2.86e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmPIKDMACELGVVS 82
Cdd:PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK-----PVEGPGAERGVVF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIAFDIKVEDMVLMGRsphkKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:PRK11248 77 QNEGLLPWRNVQDNVAFGL----QLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLL 152
|
170 180
....*....|....*....|
gi 499411747 163 DEPTNHLD--IKYQIQILNL 180
Cdd:PRK11248 153 DEPFGALDafTREQMQTLLL 172
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-225 |
2.91e-26 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 102.81 E-value: 2.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRI------CKPEsGAIYLDGKNLL--TMPIKD 73
Cdd:COG1117 11 KIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndlipgARVE-GEILLDGEDIYdpDVDVVE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 MACELGVVSQ---------FNHIAFDIKvedmvLMGRSPHKKMLEqdneqdykIAREMLEKV-------DMLnyaKRSFS 137
Cdd:COG1117 90 LRRRVGMVFQkpnpfpksiYDNVAYGLR-----LHGIKSKSELDE--------IVEESLRKAalwdevkDRL---KKSAL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 138 TLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT--TAVVALHDLNLAAAYCDKLYVMHNGNVVA 215
Cdd:COG1117 154 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKdyTIVIVTHNMQQAARVSDYTAFFYLGELVE 233
|
250
....*....|
gi 499411747 216 NGEPKDILTS 225
Cdd:COG1117 234 FGPTEQIFTN 243
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
3-222 |
3.37e-26 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 104.64 E-value: 3.37e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPikdmACELGV-- 80
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP----AENRHVnt 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQ----------FNHIAFDIKvedmvlMGRSPHKKMLEQdneqdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLA 150
Cdd:PRK09452 91 VFQsyalfphmtvFENVAFGLR------MQKTPAAEITPR--------VMEALRMVQLEEFAQRKPHQLSGGQQQRVAIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 151 RTLAQQVKLLILDEPTNHLDIK----YQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK09452 157 RAVVNKPKVLLLDESLSALDYKlrkqMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
13-214 |
3.75e-26 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 102.84 E-value: 3.75e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP---IKDMACELGVVSQFNHIAF 89
Cdd:PRK10419 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNraqRKAFRRDIQMVFQDSISAV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 DIK--VEDMVlmgRSPHKKMLEQDNEQDYKIAREMLEKVDM-LNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPT 166
Cdd:PRK10419 103 NPRktVREII---REPLRHLLSLDKAERLARASEMLRAVDLdDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAV 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 499411747 167 NHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAYCDKLYVMHNGNVV 214
Cdd:PRK10419 180 SNLDLVLQAGVIRLLKKLQqqfgTACLFITHDLRLVERFCQRVMVMDNGQIV 231
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-224 |
3.76e-26 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 102.30 E-value: 3.76e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICK--PE---SGAIYLDGKNLLTMPIKDMAC 76
Cdd:PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElyPEarvSGEVYLDGQDIFKMDVIELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 ELGVVSQ----------FNHIAFDIKVEDMVlmgrsPHKKMLEQDneqdykiAREMLEKVDMLNYAKRSF----STLSGG 142
Cdd:PRK14247 83 RVQMVFQipnpipnlsiFENVALGLKLNRLV-----KSKKELQER-------VRWALEKAQLWDEVKDRLdapaGKLSGG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 143 EKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK--TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPK 220
Cdd:PRK14247 151 QQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKkdMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230
|
....
gi 499411747 221 DILT 224
Cdd:PRK14247 231 EVFT 234
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1-217 |
3.98e-26 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 102.01 E-value: 3.98e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGK--NLLTMP----IKDM 74
Cdd:PRK11124 1 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSKTPsdkaIREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 75 ACELGVVSQFNHIAFDIKVEDMVLmgRSPhKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLA 154
Cdd:PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLI--EAP-CRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 155 QQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTA---VVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGitqVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
3-217 |
5.35e-26 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 102.40 E-value: 5.35e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICK----PESgAIYLDGKNL-----LTMPIKD 73
Cdd:PRK09984 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdksAGS-HIELLGRTVqregrLARDIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 MACELG-VVSQFNHIAFDIKVEDMVL--MGRSPH-KKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLL 149
Cdd:PRK09984 84 SRANTGyIFQQFNLVNRLSVLENVLIgaLGSTPFwRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499411747 150 ARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT----TAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:PRK09984 164 ARALMQQAKVILADEPIASLDPESARIVMDTLRDINQndgiTVVVTLHQVDYALRYCERIVALRQGHVFYDG 235
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
23-223 |
1.76e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 101.08 E-value: 1.76e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNL--LTMPIKDMACELGVVSQF-NHIAFDIKVEDMVLM 99
Cdd:PRK13636 27 INIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdySRKGLMKLRESVGMVFQDpDNQLFSASVYQDVSF 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 100 GrsPHKKMLEQDNEQdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILN 179
Cdd:PRK13636 107 G--AVNLKLPEDEVR--KRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMK 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 499411747 180 LVKS----LKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:PRK13636 183 LLVEmqkeLGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
25-230 |
1.83e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 100.97 E-value: 1.83e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 25 VNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQF-NHIAFDIKVEDMVLMGrsP 103
Cdd:PRK13647 28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDpDDQVFSSTVWDDVAFG--P 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 104 HKKMLEQDnEQDYKiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQ---IQILNL 180
Cdd:PRK13647 106 VNMGLDKD-EVERR-VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQetlMEILDR 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 499411747 181 VKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKE 230
Cdd:PRK13647 184 LHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQ 233
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
23-211 |
2.06e-25 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 99.85 E-value: 2.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmPIKDMACELGVVSQfNHIAFDIKV--EDMVLMG 100
Cdd:TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGK-----QITEPGPDRMVVFQ-NYSLLPWLTvrENIALAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 101 RSPHKKMLEQDNEQdykIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI----KYQIQ 176
Cdd:TIGR01184 80 DRVLPDLSKSERRA---IVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAltrgNLQEE 156
|
170 180 190
....*....|....*....|....*....|....*
gi 499411747 177 ILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1-217 |
2.08e-25 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 98.78 E-value: 2.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQL------GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTI--YRICKPESGAIYLDGKNLltmPIK 72
Cdd:cd03213 2 VTLSFRNLTVTVksspskSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALagRRTGLGVSGEVLINGRPL---DKR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 73 DMACELGVVSQfnhiafdikvEDMVLmgrsphkkmleqdneqDYKIAREMLekvdMLNYAKRSfstLSGGEKQRVLLART 152
Cdd:cd03213 79 SFRKIIGYVPQ----------DDILH----------------PTLTVRETL----MFAAKLRG---LSGGERKRVSIALE 125
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 153 LAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDL-NLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAdtgRTIICSIHQPsSEIFELFDKLLLLSQGRVIYFG 194
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
23-223 |
2.57e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 100.96 E-value: 2.57e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLdGKNLLT-----MPIKDMACELGVVSQFNHIAFdikVEDMV 97
Cdd:PRK13643 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV-GDIVVSstskqKEIKPVRKKVGVVFQFPESQL---FEETV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 98 LMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLN-YAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQ 176
Cdd:PRK13643 103 LKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADeFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIE 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 499411747 177 ILNLVKSLKTTA---VVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:PRK13643 183 MMQLFESIHQSGqtvVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
3-232 |
2.99e-25 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 99.57 E-value: 2.99e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPI-KDMACELGVV 81
Cdd:PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTaKIMREAVAIV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQFNHIAFDIKVEDMVLMGR-SPHKKMLEQDNEQDYKIAREMLEKvdmlnYAKRSfSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:PRK11614 86 PEGRRVFSRMTVEENLAMGGfFAERDQFQERIKWVYELFPRLHER-----RIQRA-GTMSGGEQQMLAIGRALMSQPRLL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSLKT---TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVY 232
Cdd:PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREqgmTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAY 234
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
3-211 |
3.16e-25 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 99.01 E-value: 3.16e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVS 82
Cdd:TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHI-AFD-IKVedmvlmgrspHKKMLEQDneqDYKIaREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:TIGR03740 81 LYENLtAREnLKV----------HTTLLGLP---DSRI-DEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 161 ILDEPTNHLDiKYQIQIL-NLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:TIGR03740 147 ILDEPTNGLD-PIGIQELrELIRSFPeqgITVILSSHILSEVQQLADHIGIISEG 200
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
25-195 |
3.54e-25 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 103.59 E-value: 3.54e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 25 VNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIaFDIKVEDMVLMGRSph 104
Cdd:TIGR02868 358 LPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHL-FDTTVRENLRLARP-- 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 105 kkmlEQDNEQdykiAREMLEKVDMLNYAKRSF-----------STLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKY 173
Cdd:TIGR02868 435 ----DATDEE----LWAALERVGLADWLRALPdgldtvlgeggARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506
|
170 180
....*....|....*....|....
gi 499411747 174 QIQIL-NLVKSLK-TTAVVALHDL 195
Cdd:TIGR02868 507 ADELLeDLLAALSgRTVVLITHHL 530
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
14-222 |
3.55e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 100.55 E-value: 3.55e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 14 NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDG------KNLLTmpIKDMAcelGVVSQF--N 85
Cdd:PRK13633 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGldtsdeENLWD--IRNKA---GMVFQNpdN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 86 HIAFDIkVEDMVLMGrsphKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEP 165
Cdd:PRK13633 97 QIVATI-VEEDVAFG----PENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEP 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499411747 166 TNHLDIKYQIQILNLVKSLKT----TAVVALHDLNlAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK13633 172 TAMLDPSGRREVVNTIKELNKkygiTIILITHYME-EAVEADRIIVMDSGKVVMEGTPKEI 231
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
24-223 |
3.89e-25 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 100.96 E-value: 3.89e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMA---CELGVVSQ-----FN--HIAFDIKV 93
Cdd:COG4608 40 DIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRELRplrRRMQMVFQdpyasLNprMTVGDIIA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 94 EDMVLMGRSPHKKMLEQdneqdykiAREMLEKVDmLN--YAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI 171
Cdd:COG4608 120 EPLRIHGLASKAERRER--------VAELLELVG-LRpeHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDV 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 172 KYQIQILNLVKSLKT----TAVVALHDLNLAAAYCDKLYVMHNGNVVANGePKDIL 223
Cdd:COG4608 191 SIQAQVLNLLEDLQDelglTYLFISHDLSVVRHISDRVAVMYLGKIVEIA-PRDEL 245
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-219 |
8.62e-25 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 97.48 E-value: 8.62e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQLGNK--KIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELG 79
Cdd:cd03369 6 EIEVENLSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQfnhiafdikvEDMVLMG--RSPHKKMLEQDNEQDYKIARemlekvdmlnyAKRSFSTLSGGEKQRVLLARTLAQQV 157
Cdd:cd03369 86 IIPQ----------DPTLFSGtiRSNLDPFDEYSDEEIYGALR-----------VSEGGLNLSQGQRQLLCLARALLKRP 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 158 KLLILDEPTNHLDIKYQIQILNLVKSL--KTTAVVALHDLNlAAAYCDKLYVMHNGNVVANGEP 219
Cdd:cd03369 145 RVLVLDEATASIDYATDALIQKTIREEftNSTILTIAHRLR-TIIDYDKILVMDAGEVKEYDHP 207
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
16-246 |
2.48e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 98.16 E-value: 2.48e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 16 KIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAI----YLDGKNLLTMP-IKDMACELGVVSQF-NHIAF 89
Cdd:PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTivgdYAIPANLKKIKeVKRLRKEIGLVFQFpEYQLF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 DIKVEDMVLMGrsphKKMLEQDNEQDYKIAREMLEKVDM-LNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNH 168
Cdd:PRK13645 105 QETIEKDIAFG----PVNLGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 169 LDIKYQIQILNLV----KSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQlikevyEVDCKIHTEQEP 244
Cdd:PRK13645 181 LDPKGEEDFINLFerlnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQ------ELLTKIEIDPPK 254
|
..
gi 499411747 245 MY 246
Cdd:PRK13645 255 LY 256
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-170 |
2.57e-24 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 97.63 E-value: 2.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKK----IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmPIKDMAC 76
Cdd:COG4525 2 SMLTVRHVSVRYPGGGqpqpALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGV-----PVTGPGA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 ELGVVSQfNH-----------IAFDIKvedmvLMGRSPHkkmleqdneQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQ 145
Cdd:COG4525 77 DRGVVFQ-KDallpwlnvldnVAFGLR-----LRGVPKA---------ERRARAEELLALVGLADFARRRIWQLSGGMRQ 141
|
170 180
....*....|....*....|....*
gi 499411747 146 RVLLARTLAQQVKLLILDEPTNHLD 170
Cdd:COG4525 142 RVGIARALAADPRFLLMDEPFGALD 166
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
17-225 |
5.50e-24 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 96.40 E-value: 5.50e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 17 IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNhIAFDIKVEDM 96
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQEN-VLFNRSIRDN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 97 VLMGRS--PHKKMLEQDNEQD-YKIAREMLEKVDMLnyAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKY 173
Cdd:cd03252 96 IALADPgmSMERVIEAAKLAGaHDFISELPEGYDTI--VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 499411747 174 QIQIL-NLVKSLK-TTAVVALHDLNlAAAYCDKLYVMHNGNVVANGEPKDILTS 225
Cdd:cd03252 174 EHAIMrNMHDICAgRTVIIIAHRLS-TVKNADRIIVMEKGRIVEQGSHDELLAE 226
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
1-217 |
6.09e-24 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 96.24 E-value: 6.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDG------KNLLTMPIKDM 74
Cdd:COG4161 1 MSIQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGhqfdfsQKPSEKAIRLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 75 ACELGVVSQFNHIAFDIKVEDMVLmgRSPhKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLA 154
Cdd:COG4161 81 RQKVGMVFQQYNLWPHLTVMENLI--EAP-CKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALM 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 155 QQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTA---VVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:COG4161 158 MEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGitqVIVTHEVEFARKVASQVVYMEKGRIIEQG 223
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-227 |
6.66e-24 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 99.72 E-value: 6.66e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLltmPIKD----MAC 76
Cdd:COG3845 4 PALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPV---RIRSprdaIAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 ELGVVSQfnHIAFdikVEDM-----VLMGRSPHKKMLeqdneQDYKIAREMLE--------KVDmlnyAKRSFSTLSGGE 143
Cdd:COG3845 81 GIGMVHQ--HFML---VPNLtvaenIVLGLEPTKGGR-----LDRKAARARIRelseryglDVD----PDAKVEDLSVGE 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 144 KQRVLLARTLAQQVKLLILDEPTNHL---DIKYQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPK 220
Cdd:COG3845 147 QQRVEILKALYRGARILILDEPTAVLtpqEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTA 226
|
....*..
gi 499411747 221 DILTSQL 227
Cdd:COG3845 227 ETSEEEL 233
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
3-228 |
8.28e-24 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 99.39 E-value: 8.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQ-----------LGNKKIVHNACIEVNKGEFVGLIGPNGSGKST----LLKTIyrickPESGAIYLDGKNLL 67
Cdd:PRK15134 276 LDVEQLQVAfpirkgilkrtVDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLI-----NSQGEIWFDGQPLH 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 68 TMPIKDM---ACELGVVSQFNHIAFD--IKVEDMVLMGRSPHKKMLEQDNEQDYKIarEMLEKVDmLNYAKRSF--STLS 140
Cdd:PRK15134 351 NLNRRQLlpvRHRIQVVFQDPNSSLNprLNVLQIIEEGLRVHQPTLSAAQREQQVI--AVMEEVG-LDPETRHRypAEFS 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 141 GGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNVVAN 216
Cdd:PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYlfisHDLHVVRALCHQVIVLRQGEVVEQ 507
|
250
....*....|....*....
gi 499411747 217 GE-------PKDILTSQLI 228
Cdd:PRK15134 508 GDcervfaaPQQEYTRQLL 526
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
6-235 |
1.07e-23 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 97.56 E-value: 1.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 6 ENIN--VQLGNKKI--VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACE---L 78
Cdd:PRK11153 5 KNISkvFPQGGRTIhaLNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKArrqI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVSQ-FN---------HIAFdikvedmvlmgrsPhkkmLEQDNEQDYKIAR---EMLEKVDMLNYAKRSFSTLSGGEKQ 145
Cdd:PRK11153 85 GMIFQhFNllssrtvfdNVAL-------------P----LELAGTPKAEIKArvtELLELVGLSDKADRYPAQLSGGQKQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 146 RVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKS----LKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGE--- 218
Cdd:PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDinreLGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTvse 227
|
250 260
....*....|....*....|.
gi 499411747 219 ----PKDILTSQLIKEVYEVD 235
Cdd:PRK11153 228 vfshPKHPLTREFIQSTLHLD 248
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
13-224 |
1.43e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 96.03 E-value: 1.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQF-NHIAFDI 91
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNpDDQIFSP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 92 KVEDMVLMGRSPhkkmLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLD- 170
Cdd:PRK13652 95 TVEQDIAFGPIN----LGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDp 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 171 --IKYQIQILN-LVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILT 224
Cdd:PRK13652 171 qgVKELIDFLNdLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
3-208 |
1.46e-23 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 98.90 E-value: 1.46e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINV-QLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVV 81
Cdd:TIGR02857 322 LEFSGVSVaYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQFNHIaFDIKVEDMVLMGRsphkkmleqdNEQDYKIAREMLEKV---DMLNYAKRSFST--------LSGGEKQRVLLA 150
Cdd:TIGR02857 402 PQHPFL-FAGTIAENIRLAR----------PDASDAEIREALERAgldEFVAALPQGLDTpigeggagLSGGQAQRLALA 470
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 151 RTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT--TAVVALHDLNLAAAyCDKLYVM 208
Cdd:TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQgrTVLLVTHRLALAAL-ADRIVVL 529
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
3-220 |
3.62e-23 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 94.41 E-value: 3.62e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIyldgknlltmpIKDMACELGVVS 82
Cdd:PRK09544 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKLRIGYVP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIAFDIKVEDMVLMGRSPHKKmleqdnEQDYKIAremLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:PRK09544 74 QKLYLDTTLPLTVNRFLRLRPGTK------KEDILPA---LKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499411747 163 DEPTNHLDIKYQIQILNLVKSLKTT---AVVAL-HDLNLAAAYCDKLYVMhNGNVVANGEPK 220
Cdd:PRK09544 145 DEPTQGVDVNGQVALYDLIDQLRREldcAVLMVsHDLHLVMAKTDEVLCL-NHHICCSGTPE 205
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-229 |
4.28e-23 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 97.55 E-value: 4.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDmACELG--V 80
Cdd:PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKL-AAQLGigI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 VSQFNHIAFDIKVEDMVLMGRSPHKKMLEQdNEQDYK----IAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQ 156
Cdd:PRK09700 85 IYQELSVIDELTVLENLYIGRHLTKKVCGV-NIIDWRemrvRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 157 VKLLILDEPTNHL---DIKYQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIK 229
Cdd:PRK09700 164 AKVIIMDEPTSSLtnkEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVR 239
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
3-230 |
4.83e-23 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 94.07 E-value: 4.83e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRI--CKPE---SGAIYLDGKNLLTmPIKD---M 74
Cdd:PRK14239 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndLNPEvtiTGSIVYNGHNIYS-PRTDtvdL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 75 ACELGVV-SQFNHIAFDIkVEDMVLMGR---SPHKKMLEQDNEQDYKIAREMLEKVDMLNyakRSFSTLSGGEKQRVLLA 150
Cdd:PRK14239 85 RKEIGMVfQQPNPFPMSI-YENVVYGLRlkgIKDKQVLDEAVEKSLKGASIWDEVKDRLH---DSALGLSGGQQQRVCIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 151 RTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT--TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLI 228
Cdd:PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDdyTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKH 240
|
..
gi 499411747 229 KE 230
Cdd:PRK14239 241 KE 242
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-211 |
6.10e-23 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 92.11 E-value: 6.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENinvqLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcELGVVs 82
Cdd:cd03215 5 LEVRG----LSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAI-RAGIA- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 qfnHIAFDIKVEDMVLmgrsphkkmleqdneqDYKIARemlekvdmlNYAKRSFstLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:cd03215 79 ---YVPEDRKREGLVL----------------DLSVAE---------NIALSSL--LSGGNQQKVVLARWLARDPRVLIL 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 499411747 163 DEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:cd03215 129 DEPTRGVDVGAKAEIYRLIRELAdagKAVLLISSELDELLGLCDRILVMYEG 180
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
3-228 |
7.14e-23 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 96.92 E-value: 7.14e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKT---IYrickPE---SGAIYLDGKNLLTMPIKD--- 73
Cdd:PRK13549 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVlsgVY----PHgtyEGEIIFEGEELQASNIRDter 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 -----MACELGVVSQfnhiafdIKVEDMVLMGRSPHKKMLEQDNEQdYKIAREMLEKVDM-LNYAKRsFSTLSGGEKQRV 147
Cdd:PRK13549 82 agiaiIHQELALVKE-------LSVLENIFLGNEITPGGIMDYDAM-YLRAQKLLAQLKLdINPATP-VGNLGLGQQQLV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 148 LLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILT 224
Cdd:PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKahgIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232
|
....
gi 499411747 225 SQLI 228
Cdd:PRK13549 233 DDII 236
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
3-170 |
1.06e-22 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 92.47 E-value: 1.06e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVS 82
Cdd:PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 Q----FNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQdYKIAREMLEKvdmlnyakrSFSTLSGGEKQRVLLARTLAQQVK 158
Cdd:PRK10247 88 QtptlFGDTVYDNLIFPWQIRNQQPDPAIFLDDLER-FALPDTILTK---------NIAELSGGEKQRISLIRNLQFMPK 157
|
170
....*....|..
gi 499411747 159 LLILDEPTNHLD 170
Cdd:PRK10247 158 VLLLDEITSALD 169
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
3-224 |
1.94e-22 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 92.46 E-value: 1.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGN-----KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACE 77
Cdd:COG1101 2 LELKNLSKTFNPgtvneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 LGVVSQfnhiafdikveDMvLMGRSPHKKMLEQ----------------DNEQDYKIAREMLEKVDM-L-NYAKRSFSTL 139
Cdd:COG1101 82 IGRVFQ-----------DP-MMGTAPSMTIEENlalayrrgkrrglrrgLTKKRRELFRELLATLGLgLeNRLDTKVGLL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 140 SGGEKQRV-LLARTLaQQVKLLILDEPTNHLDIKYQIQILNL----VKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVV 214
Cdd:COG1101 150 SGGQRQALsLLMATL-TKPKLLLLDEHTAALDPKTAALVLELtekiVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRII 228
|
250
....*....|..
gi 499411747 215 --ANGEPKDILT 224
Cdd:COG1101 229 ldVSGEEKKKLT 240
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-215 |
2.24e-22 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 95.09 E-value: 2.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENinvqLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDmACELGvvs 82
Cdd:COG1129 257 LEVEG----LSVGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRD-AIRAG--- 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 qfnhIAF---DIKVEDMVL------------MGRSPHKKMLeqDNEQDYKIAREMLEKVDM-LNYAKRSFSTLSGGEKQR 146
Cdd:COG1129 329 ----IAYvpeDRKGEGLVLdlsirenitlasLDRLSRGGLL--DRRRERALAEEYIKRLRIkTPSPEQPVGNLSGGNQQK 402
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499411747 147 VLLARTLAQQVKLLILDEPTNHLDI--KYQI-QILN-LVKSlKTTAVVALHDLNLAAAYCDKLYVMHNGNVVA 215
Cdd:COG1129 403 VVLAKWLATDPKVLILDEPTRGIDVgaKAEIyRLIReLAAE-GKAVIVISSELPELLGLSDRILVMREGRIVG 474
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
3-231 |
3.53e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 92.46 E-value: 3.53e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHN---ACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELG 79
Cdd:PRK13642 5 LEVENLVFKYEKESDVNQlngVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQFNHIAF-DIKVEDMVLMGRS----PHKKMLEQDNEQdykiaremLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLA 154
Cdd:PRK13642 85 MVFQNPDNQFvGATVEDDVAFGMEnqgiPREEMIKRVDEA--------LLAVNMLDFKTREPARLSGGQKQRVAVAGIIA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 155 QQVKLLILDEPTNHLDIKYQIQILNLVKSLKT----TAVVALHDLNLAAAyCDKLYVMHNGNVVANGEPKDIL-TSQLIK 229
Cdd:PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEkyqlTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFaTSEDMV 235
|
..
gi 499411747 230 EV 231
Cdd:PRK13642 236 EI 237
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
15-225 |
3.55e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 92.54 E-value: 3.55e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 15 KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDG-------KNLLTMPIKDmacELGVVSQFNHI 87
Cdd:PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDitithktKDKYIRPVRK---RIGMVFQFPES 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 88 A-FDIKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNyakRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPT 166
Cdd:PRK13646 97 QlFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMS---QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPT 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499411747 167 NHLDIKYQIQILNLVKSLKT----TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTS 225
Cdd:PRK13646 174 AGLDPQSKRQVMRLLKSLQTdenkTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
29-225 |
5.89e-22 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 92.87 E-value: 5.89e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 29 EFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNL------LTMPIKDMAceLGVVSQ----FNHIafdiKVEDMVL 98
Cdd:TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLfdsrkgIFLPPEKRR--IGYVFQearlFPHL----SVRGNLR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 99 MGRSphKKMLEQDNEQDYKIaremlekVDMLNYA---KRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQI 175
Cdd:TIGR02142 98 YGMK--RARPSERRISFERV-------IELLGIGhllGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKY 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 499411747 176 QIL----NLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTS 225
Cdd:TIGR02142 169 EILpyleRLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
16-226 |
6.39e-22 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 94.12 E-value: 6.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 16 KIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIaFDIKVED 95
Cdd:PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL-FSATLRD 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 96 MVLMGrsphkkmleQDNEQDYKIArEMLEKVDMLNYAK-------------RsfsTLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:PRK11160 433 NLLLA---------APNASDEALI-EVLQQVGLEKLLEddkglnawlgeggR---QLSGGEQRRLGIARALLHDAPLLLL 499
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 163 DEPTNHLDIKYQIQILNLVKSL---KTTAVVAlHDLNlAAAYCDKLYVMHNGNVVANGEPKDILTSQ 226
Cdd:PRK11160 500 DEPTEGLDAETERQILELLAEHaqnKTVLMIT-HRLT-GLEQFDRICVMDNGQIIEQGTHQELLAQQ 564
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
24-217 |
7.40e-22 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 90.47 E-value: 7.40e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDG-------KNLLTMpikdmaceLGVV-SQFNHIAFDIKVED 95
Cdd:cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGlvpwkrrKKFLRR--------IGVVfGQKTQLWWDLPVID 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 96 MVLMgrspHKKMLEQDNEQdykiAREMLEK-VDMLNYA---KRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI 171
Cdd:cd03267 115 SFYL----LAAIYDLPPAR----FKKRLDElSELLDLEellDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 499411747 172 KYQIQILNLVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03267 187 VAQENIRNFLKEYnrerGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
4-219 |
8.23e-22 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 92.79 E-value: 8.23e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 4 SVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMacELGVVSQ 83
Cdd:PRK11000 5 TLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAER--GVGMVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 84 ----------FNHIAFDIKvedmvLMGRSphKKMLEQDNEQdykiAREMLEKVDMLNyakRSFSTLSGGEKQRVLLARTL 153
Cdd:PRK11000 83 syalyphlsvAENMSFGLK-----LAGAK--KEEINQRVNQ----VAEVLQLAHLLD---RKPKALSGGQRQRVAIGRTL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 154 AQQVKLLILDEPTNHLD----IKYQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEP 219
Cdd:PRK11000 149 VAEPSVFLLDEPLSNLDaalrVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP 218
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
2-225 |
1.14e-21 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 90.41 E-value: 1.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKD-------- 73
Cdd:PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDgqlkvadk 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 -----MACELGVVSQ-FNHIAFDIKVEDMVlmgRSPhKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFST-LSGGEKQR 146
Cdd:PRK10619 85 nqlrlLRTRLTMVFQhFNLWSHMTVLENVM---EAP-IQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVhLSGGQQQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 147 VLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAeegKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
..
gi 499411747 224 TS 225
Cdd:PRK10619 241 GN 242
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
24-224 |
1.21e-21 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 90.03 E-value: 1.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcelgvVS---QFNHIAFDIKVEDMVLMG 100
Cdd:PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP-----VSmlfQENNLFSHLTVAQNIGLG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 101 RSPHKKMLEQDNEQDYKIAREM-LEkvdmlNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILN 179
Cdd:PRK10771 96 LNPGLKLNAAQREKLHAIARQMgIE-----DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLT 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 499411747 180 LVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILT 224
Cdd:PRK10771 171 LVSQVcqerQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-225 |
1.27e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 90.49 E-value: 1.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGK------NLLTMPIKDMAC 76
Cdd:PRK14246 11 FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKvlyfgkDIFQIDAIKLRK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 ELGVVSQFNHIAFDIKVEDMVLMgrsPHKKMLEQDNEQDYKIAREMLEKV-------DMLNYAKrsfSTLSGGEKQRVLL 149
Cdd:PRK14246 91 EVGMVFQQPNPFPHLSIYDNIAY---PLKSHGIKEKREIKKIVEECLRKVglwkevyDRLNSPA---SQLSGGQQQRLTI 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 150 ARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT--TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTS 225
Cdd:PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNeiAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-223 |
2.42e-21 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 92.47 E-value: 2.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQLG--NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELG 79
Cdd:TIGR02203 330 DVEFRNVTFRYPgrDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQFNHIaFDIKVEDMVLMGRsphkkmLEQDNEQDYKIAREMLEKVDMLNYAKRSFST--------LSGGEKQRVLLAR 151
Cdd:TIGR02203 410 LVSQDVVL-FNDTIANNIAYGR------TEQADRAEIERALAAAYAQDFVDKLPLGLDTpigengvlLSGGQRQRLAIAR 482
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 152 TLAQQVKLLILDEPTNHLDIKYQIQI---LNLVKSLKTTAVVAlHDLNlAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:TIGR02203 483 ALLKDAPILILDEATSALDNESERLVqaaLERLMQGRTTLVIA-HRLS-TIEKADRIVVMDDGRIVERGTHNELL 555
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
3-223 |
2.85e-21 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 92.50 E-value: 2.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLG-NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVV 81
Cdd:TIGR01193 474 IVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQFNHIaFDIKVEDMVLMGRSPhkKMLEQDNEQDYKIA--REMLEKVDMlNYAKR---SFSTLSGGEKQRVLLARTLAQQ 156
Cdd:TIGR01193 554 PQEPYI-FSGSILENLLLGAKE--NVSQDEIWAACEIAeiKDDIENMPL-GYQTElseEGSSISGGQKQRIALARALLTD 629
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 157 VKLLILDEPTNHLDIKYQIQIL-NLVKSLKTTAVVALHDLNLAAAyCDKLYVMHNGNVVANGEPKDIL 223
Cdd:TIGR01193 630 SKVLILDESTSNLDTITEKKIVnNLLNLQDKTIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGSHDELL 696
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
23-222 |
3.59e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 89.42 E-value: 3.59e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP----IKDMACELGVVSQF-NHIAFDIKVEDMV 97
Cdd:PRK13649 28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSknkdIKQIRKKVGLVFQFpESQLFEETVLKDV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 98 LMGrsPHKKMLEQdnEQDYKIAREMLEKVDML-NYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQ 176
Cdd:PRK13649 108 AFG--PQNFGVSQ--EEAEALAREKLALVGISeSLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 499411747 177 ILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK13649 184 LMTLFKKLHqsgMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
3-214 |
4.19e-21 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 91.69 E-value: 4.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGN----KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPE-----SGAIYLDGKNLLTMPIKD 73
Cdd:PRK15134 6 LAIENLSVAFRQqqtvRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPpvvypSGDIRFHGESLLHASEQT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 MACELGvvsqfNHIAFdIKVEDMVLMGR------------SPHKKMLEQdneqdykIAR-EM---LEKVDMLNYAKR--S 135
Cdd:PRK15134 86 LRGVRG-----NKIAM-IFQEPMVSLNPlhtlekqlyevlSLHRGMRRE-------AARgEIlncLDRVGIRQAAKRltD 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 136 FS-TLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHN 210
Cdd:PRK15134 153 YPhQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLlfitHNLSIVRKLADRVAVMQN 232
|
....
gi 499411747 211 GNVV 214
Cdd:PRK15134 233 GRCV 236
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
3-226 |
1.17e-20 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 87.67 E-value: 1.17e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGK-----NLLTMPIKD---- 73
Cdd:PRK11701 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRdgqlrDLYALSEAErrrl 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 MACELGVVSQfnHIAfdikveDMVLMGRSPHKKMLEQ---DNEQDY----KIAREMLEKV----DMLNYAKRSFStlsGG 142
Cdd:PRK11701 87 LRTEWGFVHQ--HPR------DGLRMQVSAGGNIGERlmaVGARHYgdirATAGDWLERVeidaARIDDLPTTFS---GG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 143 EKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTT----AVVALHDLNLAAAYCDKLYVMHNGNVVANGe 218
Cdd:PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRElglaVVIVTHDLAVARLLAHRLLVMKQGRVVESG- 234
|
....*...
gi 499411747 219 pkdiLTSQ 226
Cdd:PRK11701 235 ----LTDQ 238
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
6-217 |
1.18e-20 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 90.41 E-value: 1.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 6 ENINVQLGNKK-IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQf 84
Cdd:PRK13657 338 DDVSFSYDNSRqGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 85 NHIAFDIKVEDMVLMGRsphkkmlEQDNEQDYKIAREMLEKVDMLNYAKRSFST--------LSGGEKQRVLLARTLAQQ 156
Cdd:PRK13657 417 DAGLFNRSIEDNIRVGR-------PDATDEEMRAAAERAQAHDFIERKPDGYDTvvgergrqLSGGERQRLAIARALLKD 489
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 157 VKLLILDEPTNHLDIKYQIQI---LNLVKSLKTTAVVAlHDLNlAAAYCDKLYVMHNGNVVANG 217
Cdd:PRK13657 490 PPILILDEATSALDVETEAKVkaaLDELMKGRTTFIIA-HRLS-TVRNADRILVFDNGRVVESG 551
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
16-222 |
1.33e-20 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 89.00 E-value: 1.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 16 KIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMaceLGVVSQFNHIaF------ 89
Cdd:PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEW---RAVRSDIQMI-Fqdplas 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 --------DIKVEDMvlmgRSPHKKMLEQDNEQDYKiarEMLEKVDML-NYAKRSFSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:PRK15079 111 lnprmtigEIIAEPL----RTYHPKLSRQEVKDRVK---AMMLKVGLLpNLINRYPHEFSGGQCQRIGIARALILEPKLI 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK15079 184 ICDEPVSALDVSIQAQVVNLLQQLQREMGLSLifiaHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
32-223 |
1.74e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 87.76 E-value: 1.74e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 32 GLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFnhiafdikvedmvlmgRSPHKKMLEQD 111
Cdd:PRK13638 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVF----------------QDPEQQIFYTD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 112 NEQDY------------KIAR---EMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQ 176
Cdd:PRK13638 95 IDSDIafslrnlgvpeaEITRrvdEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 499411747 177 ILNLVKSLKTTA---VVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:PRK13638 175 MIAIIRRIVAQGnhvIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
20-224 |
2.51e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 87.35 E-value: 2.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 20 NACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP-IKDMACELGVVSQFNHIAFDIK-VEDMV 97
Cdd:PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSkLQGIRKLVGIVFQNPETQFVGRtVEEDL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 98 LMGrsPHKKML---EQDNEQDYKIAREMLEKvdmlnYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQ 174
Cdd:PRK13644 100 AFG--PENLCLppiEIRKRVDRALAEIGLEK-----YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 499411747 175 IQILNLVKSLK---TTAVVALHDL-NLAAAycDKLYVMHNGNVVANGEPKDILT 224
Cdd:PRK13644 173 IAVLERIKKLHekgKTIVYITHNLeELHDA--DRIIVMDRGKIVLEGEPENVLS 224
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
12-216 |
4.94e-20 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 85.31 E-value: 4.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 12 LGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC---ELGVVSQFNHIA 88
Cdd:PRK10908 12 LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFlrrQIGMIFQDHHLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 89 FDIKVEDMVLMgrsphKKMLEQDNEQDykIAREM---LEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEP 165
Cdd:PRK10908 92 MDRTVYDNVAI-----PLIIAGASGDD--IRRRVsaaLDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEP 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 499411747 166 TNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVAN 216
Cdd:PRK10908 165 TGNLDDALSEGILRLFEEFNrvgVTVLMATHDIGLISRRSYRMLTLSDGHLHGG 218
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
5-171 |
6.69e-20 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 88.47 E-value: 6.69e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 5 VENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLdGKNLltmpikdmacelgvvsqf 84
Cdd:PRK11147 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL------------------ 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 85 nHIA-FDIKVEDMvlmgrSPHKKMLEQ--DNEQDYKI---AREMLEKV-DMLNYAKRSFS---TLSGGEKQRVLLARTLA 154
Cdd:PRK11147 383 -EVAyFDQHRAEL-----DPEKTVMDNlaEGKQEVMVngrPRHVLGYLqDFLFHPKRAMTpvkALSGGERNRLLLARLFL 456
|
170
....*....|....*..
gi 499411747 155 QQVKLLILDEPTNHLDI 171
Cdd:PRK11147 457 KPSNLLILDEPTNDLDV 473
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
13-217 |
7.16e-20 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 84.89 E-value: 7.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmpikdMACELGVVSQFNHiafDIK 92
Cdd:cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR---------VSSLLGLGGGFNP---ELT 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDMV-LMGRsphkkMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI 171
Cdd:cd03220 101 GRENIyLNGR-----LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 499411747 172 KYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:cd03220 176 AFQEKCQRRLRELLkqgKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
3-213 |
8.07e-20 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 85.50 E-value: 8.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIyLDGKNLLTmpikdmacelgvvs 82
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPLA-------------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 qfnhiafDIKvEDMVLMGRS----PHKKMLeqDN-----EQDYK-IAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLART 152
Cdd:PRK11247 78 -------EAR-EDTRLMFQDarllPWKKVI--DNvglglKGQWRdAALQALAAVGLADRANEWPAALSGGQKQRVALARA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 153 LAQQVKLLILDEPTNHLDIKYQIQILNLVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNV 213
Cdd:PRK11247 148 LIHRPGLLLLDEPLGALDALTRIEMQDLIESLwqqhGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
1-225 |
1.28e-19 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 86.31 E-value: 1.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVeNINVQLGNKKIvhNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLL-TMPIKDMACE-- 77
Cdd:COG4148 1 MMLEV-DFRLRRGGFTL--DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQdSARGIFLPPHrr 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 -LGVVSQ----FNHIafdiKVEDMVLMG--RSPHKKMleqdneqdykiAREMLEKVDMLNYA---KRSFSTLSGGEKQRV 147
Cdd:COG4148 78 rIGYVFQearlFPHL----SVRGNLLYGrkRAPRAER-----------RISFDEVVELLGIGhllDRRPATLSGGERQRV 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 148 LLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTavVAL------HDLNLAAAYCDKLYVMHNGNVVANGEPKD 221
Cdd:COG4148 143 AIGRALLSSPRLLLMDEPLAALDLARKAEILPYLERLRDE--LDIpilyvsHSLDEVARLADHVVLLEQGRVVASGPLAE 220
|
....
gi 499411747 222 ILTS 225
Cdd:COG4148 221 VLSR 224
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-200 |
1.42e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 83.77 E-value: 1.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNL-LTMPIKDM----- 74
Cdd:PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIdDPDVAEAChylgh 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 75 --AC--ELGVVsqfNHIAF--DIKvedmvlmgrsphkkmleqdNEQDYKIArEMLEKVDMLNYAKRSFSTLSGGEKQRVL 148
Cdd:PRK13539 81 rnAMkpALTVA---ENLEFwaAFL-------------------GGEELDIA-AALEAVGLAPLAHLPFGYLSAGQKRRVA 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 149 LARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKS-LKT--TAVVALH-DLNLAAA 200
Cdd:PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAhLAQggIVIAATHiPLGLPGA 193
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
15-226 |
1.61e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 85.27 E-value: 1.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 15 KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLL----TMPIKDMACELGVVSQFNHIA-F 89
Cdd:PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgNKNLKKLRKKVSLVFQFPEAQlF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 DIKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNyaKRSFStLSGGEKQRVLLARTLAQQVKLLILDEPTNHL 169
Cdd:PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS--KSPFE-LSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 170 DIKYQIQILNLVKSLKT---TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQ 226
Cdd:PRK13641 177 DPEGRKEMMQLFKDYQKaghTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
3-223 |
1.68e-19 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 87.17 E-value: 1.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLD-GKNLLTMpIKDMACELGVV 81
Cdd:TIGR03269 285 VSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEWVDM-TKPGPDGRGRA 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQFNHIAFdikvEDMVLMgrsPHKKMLEQDNEQ-----------------------DYKIAREMLEKVDmlnyakrsfST 138
Cdd:TIGR03269 364 KRYIGILH----QEYDLY---PHRTVLDNLTEAiglelpdelarmkavitlkmvgfDEEKAEEILDKYP---------DE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 139 LSGGEKQRVLLARTLAQQVKLLILDEPTNHLD----IKYQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVV 214
Cdd:TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDpitkVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507
|
....*....
gi 499411747 215 ANGEPKDIL 223
Cdd:TIGR03269 508 KIGDPEEIV 516
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
3-170 |
2.90e-19 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 82.79 E-value: 2.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLltmpikdmacelgvvs 82
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 qfnHIAFDIKVEDMVLMGRSPHKK----------MLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLART 152
Cdd:TIGR01189 65 ---AEQRDEPHENILYLGHLPGLKpelsalenlhFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARL 141
|
170
....*....|....*...
gi 499411747 153 LAQQVKLLILDEPTNHLD 170
Cdd:TIGR01189 142 WLSRRPLWILDEPTTALD 159
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
3-225 |
3.14e-19 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 85.86 E-value: 3.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDM----ACEL 78
Cdd:PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELrevrRKKI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVSQFNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVK 158
Cdd:PRK10070 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREK----ALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPD 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499411747 159 LLILDEPTNHLD----IKYQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTS 225
Cdd:PRK10070 185 ILLMDEAFSALDplirTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
17-219 |
3.16e-19 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 82.93 E-value: 3.16e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 17 IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQfnhiafdikveDM 96
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQ-----------DP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 97 VLMG---RS---PHKkmlEQDNEQDYKIaremLEKVDMLNYAKRSF-----------STLSGGEKQRVLLARTLAQQVKL 159
Cdd:cd03244 88 VLFSgtiRSnldPFG---EYSDEELWQA----LERVGLKEFVESLPggldtvveeggENLSVGQRQLLCLARALLRKSKI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499411747 160 LILDEPTNHLDIKYQIQILNLVKSL---KTTAVVAlHDLNlAAAYCDKLYVMHNGNVVANGEP 219
Cdd:cd03244 161 LVLDEATASVDPETDALIQKTIREAfkdCTVLTIA-HRLD-TIIDSDRILVLDKGRVVEFDSP 221
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
3-222 |
3.43e-19 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 84.79 E-value: 3.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKI----VHNACIEVNKGEFVGLIGPNGSGKS----TLLKTIYRICKPESGAIYLDGKNLLTMPIKD- 73
Cdd:PRK11022 4 LNVDKLSVHFGDESApfraVDRISYSVKQGEVVGIVGESGSGKSvsslAIMGLIDYPGRVMAEKLEFNGQDLQRISEKEr 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 ---MACELGVVSQ-----FN---HIAFDIKVEDMVLMGRSphKKMLEQDneqdykiAREMLEKVDMLNYAKR---SFSTL 139
Cdd:PRK11022 84 rnlVGAEVAMIFQdpmtsLNpcyTVGFQIMEAIKVHQGGN--KKTRRQR-------AIDLLNQVGIPDPASRldvYPHQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 140 SGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNVVA 215
Cdd:PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALvlitHDLALVAEAAHKIIVMYAGQVVE 234
|
....*..
gi 499411747 216 NGEPKDI 222
Cdd:PRK11022 235 TGKAHDI 241
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
24-219 |
3.72e-19 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 83.61 E-value: 3.72e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPikdmacelgvvsQFNHIAFDIKVEDMVlmgrsp 103
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKP------------QYIKADYEGTVRDLL------ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 104 HKKMLEQDNEQDYKIarEMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKS 183
Cdd:cd03237 83 SSITKDFYTHPYFKT--EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRR 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 499411747 184 L----KTTAVVALHDLNLAAAYCDKLyvmhngnVVANGEP 219
Cdd:cd03237 161 FaennEKTAFVVEHDIIMIDYLADRL-------IVFEGEP 193
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-204 |
9.50e-19 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 82.91 E-value: 9.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRI------CKPEsGAIYLDGKNLLTMPIKDMA 75
Cdd:PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLndlipgFRVE-GKVTFHGKNLYAPDVDPVE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 76 CE--LGVVSQ---------FNHIAFDIKVEDMvlmgrsphKKMLEQDNEQDYKIAREMLEKVDMLnyaKRSFSTLSGGEK 144
Cdd:PRK14243 89 VRrrIGMVFQkpnpfpksiYDNIAYGARINGY--------KGDMDELVERSLRQAALWDEVKDKL---KQSGLSLSGGQQ 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499411747 145 QRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT--TAVVALHDLNLAAAYCDK 204
Cdd:PRK14243 158 QRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEqyTIIIVTHNMQQAARVSDM 219
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
25-211 |
2.12e-18 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 80.98 E-value: 2.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 25 VNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC----ELGVVSQ-FNHIAFDIKVEDMVLM 99
Cdd:PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKlrakHVGFVFQsFMLIPTLNALENVELP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 100 GrsphkkMLEQDNE-QDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQIL 178
Cdd:PRK10584 113 A------LLRGESSrQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
|
170 180 190
....*....|....*....|....*....|....*..
gi 499411747 179 NLVKSLK----TTAVVALHDLNLAAAyCDKLYVMHNG 211
Cdd:PRK10584 187 DLLFSLNrehgTTLILVTHDLQLAAR-CDRRLRLVNG 222
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
14-226 |
2.28e-18 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 84.00 E-value: 2.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 14 NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLltmpikdmacelgvvSQFNHIAFDIKV 93
Cdd:TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL---------------VQYDHHYLHRQV 557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 94 ----EDMVLMGRSPhkkmleQDNeqdykIAREM--LEKVDMLNYAKRSF--------------------STLSGGEKQRV 147
Cdd:TIGR00958 558 alvgQEPVLFSGSV------REN-----IAYGLtdTPDEEIMAAAKAANahdfimefpngydtevgekgSQLSGGQKQRI 626
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 148 LLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVALHDLNLAAAyCDKLYVMHNGNVVANGEPKDILTSQ 226
Cdd:TIGR00958 627 AIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
15-217 |
2.79e-18 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 82.44 E-value: 2.79e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 15 KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNlltmPIKD---MACELGVVS-QFNHIAFD 90
Cdd:COG4586 35 VEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYV----PFKRrkeFARRIGVVFgQRSQLWWD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 91 IKVEDMVLMgrspHKKMLEQDnEQDYKIAREMLekVDMLN---YAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTN 167
Cdd:COG4586 111 LPAIDSFRL----LKAIYRIP-DAEYKKRLDEL--VELLDlgeLLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTI 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 499411747 168 HLDIKYQIQILNLVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:COG4586 184 GLDVVSKEAIREFLKEYnrerGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDG 237
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
24-219 |
3.37e-18 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 83.30 E-value: 3.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmpikdmacelgvVS---QFNHIAFDIKVEDMVlmg 100
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLK----------------ISykpQYISPDYDGTVEEFL--- 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 101 RSPHKKMLEQDNEQDyKIAREM-LEKvdMLNyakRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQ--- 176
Cdd:COG1245 423 RSANTDDFGSSYYKT-EIIKPLgLEK--LLD---KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAvak 496
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 499411747 177 -ILNLVKSLKTTAVVALHDLNLAAAYCDKLyvmhngnVVANGEP 219
Cdd:COG1245 497 aIRRFAENRGKTAMVVDHDIYLIDYISDRL-------MVFEGEP 533
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-225 |
3.53e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 81.30 E-value: 3.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIY-----LDGKNLLTM-PIKDMAC 76
Cdd:PRK14271 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYsgdvlLGGRSIFNYrDVLEFRR 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 ELGVVSQFNHiAFDIKVEDMVLMGRSPHKKMLEQDNEqdyKIAREMLEKVDMLNYAKRSFST----LSGGEKQRVLLART 152
Cdd:PRK14271 102 RVGMLFQRPN-PFPMSIMDNVLAGVRAHKLVPRKEFR---GVAQARLTEVGLWDAVKDRLSDspfrLSGGQQQLLCLART 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 153 LAQQVKLLILDEPTNHLDIKYQIQILNLVKSL--KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTS 225
Cdd:PRK14271 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLadRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
24-222 |
4.68e-18 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 81.55 E-value: 4.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP---IKDMACELGVVSQfNHIAfdikvedmvlmG 100
Cdd:PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADpeaQKLLRQKIQIVFQ-NPYG-----------S 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 101 RSPHKKmLEQDNEQDYKI------------AREMLEKVDML-NYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTN 167
Cdd:PRK11308 105 LNPRKK-VGQILEEPLLIntslsaaerrekALAMMAKVGLRpEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVS 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 168 HLDIKYQIQILNLV----KSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK11308 184 ALDVSVQAQVLNLMmdlqQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
13-217 |
8.97e-18 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 82.18 E-value: 8.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQ----FNH-I 87
Cdd:COG5265 369 PERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASLRAAIGIVPQdtvlFNDtI 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 88 AFDIkvedmvLMGRsphkkmLEQDNEQDYKIAR--EMLEKVDMLnyaKRSFST--------LSGGEKQRVLLARTLAQQV 157
Cdd:COG5265 449 AYNI------AYGR------PDASEEEVEAAARaaQIHDFIESL---PDGYDTrvgerglkLSGGEKQRVAIARTLLKNP 513
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499411747 158 KLLILDEPTNHLDIKYQIQI---LNLVKSLKTTAVVAlHDLNlAAAYCDKLYVMHNGNVVANG 217
Cdd:COG5265 514 PILIFDEATSALDSRTERAIqaaLREVARGRTTLVIA-HRLS-TIVDADEILVLEAGRIVERG 574
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
3-180 |
1.30e-17 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 81.48 E-value: 1.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNlltmpikdmacELGVVS 82
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA-----------NIGYYA 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFNHIAFDikvEDMVLMG-RSPHKKmlEQDNEQdykIAREMLEKvdML---NYAKRSFSTLSGGEKQRVLLARTLAQQVK 158
Cdd:PRK15064 389 QDHAYDFE---NDLTLFDwMSQWRQ--EGDDEQ---AVRGTLGR--LLfsqDDIKKSVKVLSGGEKGRMLFGKLMMQKPN 458
|
170 180
....*....|....*....|..
gi 499411747 159 LLILDEPTNHLDIKyQIQILNL 180
Cdd:PRK15064 459 VLVMDEPTNHMDME-SIESLNM 479
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
15-223 |
1.60e-17 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 78.97 E-value: 1.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 15 KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlLTMPIkdmacELGVvsqfnhiAFDikvE 94
Cdd:COG1134 39 FWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGR--VSALL-----ELGA-------GFH---P 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 95 DM----------VLMGRSPhkkmleqdneqdykiaREMLEKVD-------MLNYAKRSFSTLSGGEKQRvlLARTLAQQV 157
Cdd:COG1134 102 ELtgreniylngRLLGLSR----------------KEIDEKFDeivefaeLGDFIDQPVKTYSSGMRAR--LAFAVATAV 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499411747 158 K--LLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:COG1134 164 DpdILLVDEVLAVGDAAFQKKCLARIRELResgRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVI 234
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
24-219 |
1.92e-17 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 81.01 E-value: 1.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmpikdmacelgvVS---QFNHIAFDIKVEDMVlmg 100
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELK----------------ISykpQYIKPDYDGTVEDLL--- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 101 rsphKKMLEQDNEQDYKIarEMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQ---- 176
Cdd:PRK13409 422 ----RSITDDLGSSYYKS--EIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAvaka 495
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 499411747 177 ILNLVKSLKTTAVVALHDLNLAAAYCDKLyvmhngnVVANGEP 219
Cdd:PRK13409 496 IRRIAEEREATALVVDHDIYMIDYISDRL-------MVFEGEP 531
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
24-211 |
2.69e-17 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 80.48 E-value: 2.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDmACELGVVsqfnHIAFDIKVEDMVL----- 98
Cdd:PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ-RLARGLV----YLPEDRQSSGLYLdapla 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 99 ---MGRSPHKKMLEQDNEQDYKIA----REMLEKvdmLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI 171
Cdd:PRK15439 360 wnvCALTHNRRGFWIKPARENAVLeryrRALNIK---FNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 499411747 172 KYQIQILNLVKSLKTTAVVAL---HDLNLAAAYCDKLYVMHNG 211
Cdd:PRK15439 437 SARNDIYQLIRSIAAQNVAVLfisSDLEEIEQMADRVLVMHQG 479
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
3-222 |
3.97e-17 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 80.28 E-value: 3.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKK----IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGknLLTMPIKDMACEL 78
Cdd:PRK10261 13 LAVENLNIAFMQEQqkiaAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK--MLLRRRSRQVIEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVSQFNhiAFDIKVEDMVLMGRSPHKKM---------------LEQ--DNEQDYKIAREMLEKV---DMLNYAKRSFST 138
Cdd:PRK10261 91 SEQSAAQ--MRHVRGADMAMIFQEPMTSLnpvftvgeqiaesirLHQgaSREEAMVEAKRMLDQVripEAQTILSRYPHQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 139 LSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNVV 214
Cdd:PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVifitHDMGVVAEIADRVLVMYQGEAV 248
|
....*...
gi 499411747 215 ANGEPKDI 222
Cdd:PRK10261 249 ETGSVEQI 256
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
5-222 |
1.05e-16 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 77.11 E-value: 1.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 5 VENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP---IKDMACELGVV 81
Cdd:PRK11831 10 MRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSrsrLYTVRKRMSML 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQFNHIAFDIKVEDMVLMGRSPHKKMLEqdnEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLI 161
Cdd:PRK11831 90 FQSGALFTDMNVFDNVAYPLREHTQLPA---PLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 162 LDEPTNHLDikyQIQILNLVK-------SLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK11831 167 FDEPFVGQD---PITMGVLVKliselnsALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
27-195 |
1.32e-16 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 78.70 E-value: 1.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 27 KGEFVGLIGPNGSGKSTLLK-----TIYRICKPESGAI------YLDGKNLLTMpIKDMAC-ELGVVSQFNHI-----AF 89
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKilsgeLIPNLGDYEEEPSwdevlkRFRGTELQNY-FKKLYNgEIKVVHKPQYVdlipkVF 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 DIKVEDMvlmgrsphkkmLEQDNEQdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHL 169
Cdd:PRK13409 177 KGKVREL-----------LKKVDER--GKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYL 243
|
170 180
....*....|....*....|....*....
gi 499411747 170 DIKYQIQILNLVKSL---KTTAVVAlHDL 195
Cdd:PRK13409 244 DIRQRLNVARLIRELaegKYVLVVE-HDL 271
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
3-213 |
1.81e-16 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 78.29 E-value: 1.81e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLdgknllTMPIKdmaceLGVVS 82
Cdd:PRK10636 313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL------AKGIK-----LGYFA 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QfnHIAFDIKVEDMVLMGRSphkKMLEQDNEQDYkiaREMLE----KVDMLNYAKRSFStlsGGEKQRVLLARTLAQQVK 158
Cdd:PRK10636 382 Q--HQLEFLRADESPLQHLA---RLAPQELEQKL---RDYLGgfgfQGDKVTEETRRFS---GGEKARLVLALIVWQRPN 450
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 159 LLILDEPTNHLDIKYQIQILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNV 213
Cdd:PRK10636 451 LLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
13-222 |
1.87e-16 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 77.58 E-value: 1.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELgvVSQ--------- 83
Cdd:PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM--VFQnyalyphms 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 84 -FNHIAFDIKVedmvlmgrsphKKMLEQDNEQDYKIAREMLEKVDMLnyaKRSFSTLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:PRK11650 93 vRENMAYGLKI-----------RGMPKAEIEERVAEAARILELEPLL---DRKPRELSGGQRQRVAMGRAIVREPAVFLF 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 163 DEPTNHLDIKYQIQ----ILNLVKSLKTTAVVALHD----LNLAaaycDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK11650 159 DEPLSNLDAKLRVQmrleIQRLHRRLKTTSLYVTHDqveaMTLA----DRVVVMNGGVAEQIGTPVEV 222
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
15-214 |
1.95e-16 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 75.77 E-value: 1.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 15 KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRI--CKPESGAIYLDGknlltmpikdmacelgvvsqfNHIAFDIK 92
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGAlkGTPVAGCVDVPD---------------------NQFGREAS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDMVLMGRSPHKKMleqdneqdykiarEMLEKV---DMLNYaKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHL 169
Cdd:COG2401 102 LIDAIGRKGDFKDAV-------------ELLNAVglsDAVLW-LRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 499411747 170 D------IKYQIQilNLVKSLKTTAVVALHDLNLAAAYC-DKLYVMHNGNVV 214
Cdd:COG2401 168 DrqtakrVARNLQ--KLARRAGITLVVATHHYDVIDDLQpDLLIFVGYGGVP 217
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
3-243 |
2.08e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 77.92 E-value: 2.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLL--------------KTIYR--ICkPESGAIYLDGKNL 66
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMhvlrgmdqyeptsgRIIYHvaLC-EKCGYVERPSKVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 67 LTMPIKDMACELGVVSQFN-----------HIA------FDIKVEDMVLmgrsphKKMLEQDNEQDYK------IAREML 123
Cdd:TIGR03269 80 EPCPVCGGTLEPEEVDFWNlsdklrrrirkRIAimlqrtFALYGDDTVL------DNVLEALEEIGYEgkeavgRAVDLI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 124 EKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIK----YQIQILNLVKSLKTTAVVALHDLNLAA 199
Cdd:TIGR03269 154 EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQtaklVHNALEEAVKASGISMVLTSHWPEVIE 233
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 499411747 200 AYCDKLYVMHNGNVVANGEPKDILTS--QLIKEVyEVDCKIHTEQE 243
Cdd:TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVAVfmEGVSEV-EKECEVEVGEP 278
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
33-227 |
2.51e-16 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 75.98 E-value: 2.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 33 LIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNL-----------LTMPIKDMACELGVVSQFNHIaFDIkvedmvlmgr 101
Cdd:PRK15112 44 IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLhfgdysyrsqrIRMIFQDPSTSLNPRQRISQI-LDF---------- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 102 sPHKKMLEQDNEQDYKIAREMLEKVDML-NYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNL 180
Cdd:PRK15112 113 -PLRLNTDLEPEQREKQIIETLRQVGLLpDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINL 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 499411747 181 VKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQL 227
Cdd:PRK15112 192 MLELQEKQGISYiyvtQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPL 242
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
3-217 |
2.88e-16 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 75.83 E-value: 2.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTI-----YRICkpeSGAIYLDGKNLLTMPiKDMACE 77
Cdd:CHL00131 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIaghpaYKIL---EGDILFKGESILDLE-PEERAH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 LGVVsqfnhIAFDIKVE-------DMV-LMGRSPHKKMleQDNEQD----YKIAREMLEKVDMlnyaKRSFST------L 139
Cdd:CHL00131 84 LGIF-----LAFQYPIEipgvsnaDFLrLAYNSKRKFQ--GLPELDplefLEIINEKLKLVGM----DPSFLSrnvnegF 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 140 SGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTA---VVALHDLNLaAAYC--DKLYVMHNGNVV 214
Cdd:CHL00131 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEnsiILITHYQRL-LDYIkpDYVHVMQNGKII 231
|
...
gi 499411747 215 ANG 217
Cdd:CHL00131 232 KTG 234
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
15-217 |
3.38e-16 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 75.00 E-value: 3.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 15 KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIyrICKPE-----SGAIYLDGKnllTMPIKDMACELGVVSQFNHIAF 89
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAI--SGRVEgggttSGQILFNGQ---PRKPDQFQKCVAYVRQDDILLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 DIKVEDMV---LMGRSPHKKmleqDNEQDYKIAREMLEK-VDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEP 165
Cdd:cd03234 95 GLTVRETLtytAILRLPRKS----SDAIRKKRVEDVLLRdLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEP 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499411747 166 TNHLDikyQIQILNLVKSLKTTAV------VALH----DL-NLAaaycDKLYVMHNGNVVANG 217
Cdd:cd03234 171 TSGLD---SFTALNLVSTLSQLARrnriviLTIHqprsDLfRLF----DRILLLSSGEIVYSG 226
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
13-170 |
3.53e-16 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 77.28 E-value: 3.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAI---------------YLD-GKNLLTMPIKDMAC 76
Cdd:TIGR03719 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEArpqpgikvgylpqepQLDpTKTVRENVEEGVAE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 77 ELGVVSQFNHI--AFDIKVEDM-VLMgrsphKKMLEQDNEQDYKIAREMLEKVDMLNYAKR------SFSTLSGGEKQRV 147
Cdd:TIGR03719 96 IKDALDRFNEIsaKYAEPDADFdKLA-----AEQAELQEIIDAADAWDLDSQLEIAMDALRcppwdaDVTKLSGGERRRV 170
|
170 180
....*....|....*....|...
gi 499411747 148 LLARTLAQQVKLLILDEPTNHLD 170
Cdd:TIGR03719 171 ALCRLLLSKPDMLLLDEPTNHLD 193
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
16-220 |
4.83e-16 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 77.07 E-value: 4.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 16 KIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAC----ELGVVSQ----FNHI 87
Cdd:PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQlrreHFGFIFQryhlLSHL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 88 AFDIKVEDMVLMGRSPHKKMLEQdneqdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTN 167
Cdd:PRK10535 102 TAAQNVEVPAVYAGLERKQRLLR--------AQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 168 HLDIKYQIQILNLVKSLKT---TAVVALHDlNLAAAYCDKLYVMHNGNVVANGEPK 220
Cdd:PRK10535 174 ALDSHSGEEVMAILHQLRDrghTVIIVTHD-PQVAAQAERVIEIRDGEIVRNPPAQ 228
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
3-196 |
4.86e-16 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 76.85 E-value: 4.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDgKNLltmpikdmacELGVVS 82
Cdd:PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD-PNE----------RLGKLR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QfNHIAF-DIKVEDMVLMGrspHKKMLEQDNEQD--YKIArEMLE----KV--------DMLNYAKRS------------ 135
Cdd:PRK15064 71 Q-DQFAFeEFTVLDTVIMG---HTELWEVKQERDriYALP-EMSEedgmKVadlevkfaEMDGYTAEAragelllgvgip 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 136 -------FSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIkYQI----QILNLVKSlktTAVVALHD---LN 196
Cdd:PRK15064 146 eeqhyglMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDI-NTIrwleDVLNERNS---TMIIISHDrhfLN 216
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-222 |
4.96e-16 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 76.99 E-value: 4.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQ-LGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcELGVv 81
Cdd:COG3845 258 LEVENLSVRdDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERR-RLGV- 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 sqfNHI-----------AFDIkVEDMVLmgRSPHKKMLEQDNEQDYKIAREMLEKVdmlnyaKRSF-----------STL 139
Cdd:COG3845 336 ---AYIpedrlgrglvpDMSV-AENLIL--GRYRRPPFSRGGFLDRKAIRAFAEEL------IEEFdvrtpgpdtpaRSL 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 140 SGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT--TAVVAL-HDLNLAAAYCDKLYVMHNGNVVAN 216
Cdd:COG3845 404 SGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDagAAVLLIsEDLDEILALSDRIAVMYEGRIVGE 483
|
....*.
gi 499411747 217 GEPKDI 222
Cdd:COG3845 484 VPAAEA 489
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-225 |
5.27e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 75.07 E-value: 5.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPES-----GAIYLDGKNLLT--MPIKDMA 75
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIYErrVNLNRLR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 76 CELGVV---------SQFNHIAFDIKvedmvLMGRSPHkkmLEQDNeqdykIAREMLEKVDMLNYAK----RSFSTLSGG 142
Cdd:PRK14258 88 RQVSMVhpkpnlfpmSVYDNVAYGVK-----IVGWRPK---LEIDD-----IVESALKDADLWDEIKhkihKSALDLSGG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 143 EKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAYCDKLYVMHN-----GNV 213
Cdd:PRK14258 155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlrseLTMVIVSHNLHQVSRLSDFTAFFKGnenriGQL 234
|
250
....*....|..
gi 499411747 214 VANGEPKDILTS 225
Cdd:PRK14258 235 VEFGLTKKIFNS 246
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
3-190 |
5.30e-16 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 76.77 E-value: 5.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKK-IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYL-DGKNLLTMP---------I 71
Cdd:COG4178 363 LALEDLTLRTPDGRpLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIARpAGARVLFLPqrpylplgtL 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 72 KDMACELGVVSQFnhiafdikvedmvlmgrsphkkmleqDNEQdykiAREMLEKV------DMLNYAKRSFSTLSGGEKQ 145
Cdd:COG4178 443 REALLYPATAEAF--------------------------SDAE----LREALEAVglghlaERLDEEADWDQVLSLGEQQ 492
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 499411747 146 RVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKS-LKTTAVV 190
Cdd:COG4178 493 RLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLREeLPGTTVI 538
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
24-217 |
5.58e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 76.81 E-value: 5.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTI-----YRickpesGAIYLDGKNLLTMPIKDMACELGVVSQfNHIAFDIKVEDMVL 98
Cdd:PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALlgflpYQ------GSLKINGIELRELDPESWRKHLSWVGQ-NPQLPHGTLRDNVL 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 99 MGRSP-HKKMLEQDNEQDYkiAREMLEKVDM-LNYA-KRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQI 175
Cdd:PRK11174 445 LGNPDaSDEQLQQALENAW--VSEFLPLLPQgLDTPiGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQ 522
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 499411747 176 QILNLVK--SLKTTAVVALHDLN-LAAayCDKLYVMHNGNVVANG 217
Cdd:PRK11174 523 LVMQALNaaSRRQTTLMVTHQLEdLAQ--WDQIWVMQDGQIVQQG 565
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
18-211 |
1.64e-15 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 75.82 E-value: 1.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 18 VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTmPIKDMACELGVVSQFNHIafdikveDMV 97
Cdd:TIGR01257 1955 VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAI-------DDL 2026
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 98 LMGRSP---HKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQ 174
Cdd:TIGR01257 2027 LTGREHlylYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 499411747 175 IQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:TIGR01257 2107 RMLWNTIVSIireGRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
2-187 |
1.65e-15 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 75.72 E-value: 1.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQL--GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPEsGAIYLDGKNLLTMPIKDMACELG 79
Cdd:TIGR01271 1217 QMDVQGLTAKYteAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFG 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQFNHIafdikVEDMVLMGRSPHKKMleqDNEQDYKIARE-----MLEKV-DMLNYA-KRSFSTLSGGEKQRVLLART 152
Cdd:TIGR01271 1296 VIPQKVFI-----FSGTFRKNLDPYEQW---SDEEIWKVAEEvglksVIEQFpDKLDFVlVDGGYVLSNGHKQLMCLARS 1367
|
170 180 190
....*....|....*....|....*....|....*.
gi 499411747 153 LAQQVKLLILDEPTNHLD-IKYQIqilnLVKSLKTT 187
Cdd:TIGR01271 1368 ILSKAKILLLDEPSAHLDpVTLQI----IRKTLKQS 1399
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-213 |
1.68e-15 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 74.12 E-value: 1.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQL--GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPEsGAIYLDGKNLLTMPIKDMACELG 79
Cdd:cd03289 2 QMTVKDLTAKYteGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQKWRKAFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQfnhiafdikvedMVLMGRSPHKKMLE----QDNEQDYKIAREM-LEKV-----DMLNYA-KRSFSTLSGGEKQRVL 148
Cdd:cd03289 81 VIPQ------------KVFIFSGTFRKNLDpygkWSDEEIWKVAEEVgLKSVieqfpGQLDFVlVDGGCVLSHGHKQLMC 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 149 LARTLAQQVKLLILDEPTNHLD-IKYQIQILNLVKSLKT-TAVVALHDLNlAAAYCDKLYVMHNGNV 213
Cdd:cd03289 149 LARSVLSKAKILLLDEPSAHLDpITYQVIRKTLKQAFADcTVILSEHRIE-AMLECQRFLVIEENKV 214
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
13-226 |
2.25e-15 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 75.14 E-value: 2.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIAFDiK 92
Cdd:PRK10790 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDMVLMGRsphkkmlEQDNEQDYkiarEMLEKVDMLNYAkRSFS------------TLSGGEKQRVLLARTLAQQVKLL 160
Cdd:PRK10790 431 FLANVTLGR-------DISEEQVW----QALETVQLAELA-RSLPdglytplgeqgnNLSVGQKQLLALARVLVQTPQIL 498
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 161 ILDEPTNHLD--IKYQIQ-ILNLVKSlKTTAVVALHDLNLAAAyCDKLYVMHNGNVVANGEPKDILTSQ 226
Cdd:PRK10790 499 ILDEATANIDsgTEQAIQqALAAVRE-HTTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLLAAQ 565
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
17-197 |
2.32e-15 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 72.89 E-value: 2.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 17 IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQfnhiafdikveDM 96
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQ-----------EP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 97 VLMGRSPhkkmleQDNEQdYKIAREMLEKVDML--NYAKRSF----------------STLSGGEKQRVLLARTLAQQVK 158
Cdd:cd03248 98 VLFARSL------QDNIA-YGLQSCSFECVKEAaqKAHAHSFiselasgydtevgekgSQLSGGQKQRVAIARALIRNPQ 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 499411747 159 LLILDEPTNHLDIKYQIQILNLVKS--LKTTAVVALHDLNL 197
Cdd:cd03248 171 VLILDEATSALDAESEQQVQQALYDwpERRTVLVIAHRLST 211
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
3-225 |
2.32e-15 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 74.07 E-value: 2.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQL----GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPE----SGAIYLDGKNLLTMPIKDM 74
Cdd:PRK15093 4 LDIRNLTIEFktsdGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNwrvtADRMRFDDIDLLRLSPRER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 75 ACELG----VVSQFNHIAFD----IKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNY--AKRSFS-TLSGGE 143
Cdd:PRK15093 84 RKLVGhnvsMIFQEPQSCLDpserVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHkdAMRSFPyELTEGE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 144 KQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK----TTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEP 219
Cdd:PRK15093 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNqnnnTTILLISHDLQMLSQWADKINVLYCGQTVETAPS 243
|
....*.
gi 499411747 220 KDILTS 225
Cdd:PRK15093 244 KELVTT 249
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
19-223 |
2.49e-15 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 75.06 E-value: 2.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 19 HNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIaFDIKVEDMVL 98
Cdd:PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL-FNDTIANNIA 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 99 MGRSphkkmlEQDNEQDYKIAREMLEKVDMLNYAKRSFST--------LSGGEKQRVLLARTLAQQVKLLILDEPTNHLD 170
Cdd:PRK11176 439 YART------EQYSREQIEEAARMAYAMDFINKMDNGLDTvigengvlLSGGQRQRIAIARALLRDSPILILDEATSALD 512
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 171 IKYQIQI---LNLVKSLKTTAVVAlHDLN-LAAAycDKLYVMHNGNVVANGEPKDIL 223
Cdd:PRK11176 513 TESERAIqaaLDELQKNRTSLVIA-HRLStIEKA--DEILVVEDGEIVERGTHAELL 566
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-223 |
2.51e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 72.95 E-value: 2.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSVE--NINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICK--PES---GAIYLDGKNLLTMPIKD 73
Cdd:PRK14267 1 MKFAIEtvNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLElnEEArveGEVRLFGRNIYSPDVDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 MAC--ELGVVSQFNHIAFDIKVEDMVLMGRSpHKKMLEQDNEQDyKIAREMLEKVDMLNYAKRSF----STLSGGEKQRV 147
Cdd:PRK14267 81 IEVrrEVGMVFQYPNPFPHLTIYDNVAIGVK-LNGLVKSKKELD-ERVEWALKKAALWDEVKDRLndypSNLSGGQRQRL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 148 LLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKT--TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDIL 223
Cdd:PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKeyTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
14-211 |
2.72e-15 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 72.12 E-value: 2.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 14 NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmpikdmaceLGVVSQFNHIAFDiKV 93
Cdd:cd03250 17 TSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS-------------IAYVSQEPWIQNG-TI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 94 EDMVLMGRSPHKKMLEQ--DN---EQDYKIaremLEKVDMLNYAKRSfSTLSGGEKQRVLLARTLAQQVKLLILDEPTNH 168
Cdd:cd03250 83 RENILFGKPFDEERYEKviKAcalEPDLEI----LPDGDLTEIGEKG-INLSGGQKQRISLARAVYSDADIYLLDDPLSA 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 499411747 169 LDIK-----YQIQILNLVKSLKTTaVVALHDLNLaAAYCDKLYVMHNG 211
Cdd:cd03250 158 VDAHvgrhiFENCILGLLLNNKTR-ILVTHQLQL-LPHADQIVVLDNG 203
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
17-224 |
3.84e-15 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 74.77 E-value: 3.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 17 IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQ----------FNh 86
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQapvlfsgtvrFN- 1332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 87 iafdikvedmvlmgrsphkkmLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTL-----------SGGEKQRVLLARTLAQ 155
Cdd:PLN03130 1333 ---------------------LDPFNEHNDADLWESLERAHLKDVIRRNSLGLdaevseagenfSVGQRQLLSLARALLR 1391
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499411747 156 QVKLLILDEPTNHLDIK----YQIQILNLVKSlkTTAVVALHDLNLAAAyCDKLYVMHNGNVVANGEPKDILT 224
Cdd:PLN03130 1392 RSKILVLDEATAAVDVRtdalIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLS 1461
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
3-171 |
5.41e-15 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 73.82 E-value: 5.41e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLdGKNLltmpikdmacELGVVS 82
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETV----------KLAYVD 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 QFnHIAFDikvedmvlmgrsPHKKMLEqdneqdykiarEMLEKVDMLNYAKRSFST--------------------LSGG 142
Cdd:TIGR03719 392 QS-RDALD------------PNKTVWE-----------EISGGLDIIKLGKREIPSrayvgrfnfkgsdqqkkvgqLSGG 447
|
170 180
....*....|....*....|....*....
gi 499411747 143 EKQRVLLARTLAQQVKLLILDEPTNHLDI 171
Cdd:TIGR03719 448 ERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
27-195 |
7.98e-15 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 73.28 E-value: 7.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 27 KGEFVGLIGPNGSGKSTLLKTIYRICKPESGaiyldgkNLLTMPIKDMacelgVVSQF------NHI----AFDIKVE-- 94
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKPNLG-------DYDEEPSWDE-----VLKRFrgtelqDYFkklaNGEIKVAhk 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 95 ----DM---VLMGRSphKKMLEQDNEQdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTN 167
Cdd:COG1245 166 pqyvDLipkVFKGTV--RELLEKVDER--GKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSS 241
|
170 180 190
....*....|....*....|....*....|.
gi 499411747 168 HLDIKYQIQILNLVKSL---KTTAVVALHDL 195
Cdd:COG1245 242 YLDIYQRLNVARLIRELaeeGKYVLVVEHDL 272
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
3-170 |
1.35e-14 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 70.21 E-value: 1.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLltmpikdmacelgvvs 82
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 qfnHIAFDIKVEDMVLMGRSPHKKMLEQDNEQDYKIAR--------EMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLA 154
Cdd:cd03231 65 ---DFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAdhsdeqveEALARVGLNGFEDRPVAQLSAGQQRRVALARLLL 141
|
170
....*....|....*.
gi 499411747 155 QQVKLLILDEPTNHLD 170
Cdd:cd03231 142 SGRPLWILDEPTTALD 157
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
24-216 |
1.35e-14 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 72.64 E-value: 1.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKD------MAC-----ELGVVsqfnHIAfdiK 92
Cdd:PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDairagiMLCpedrkAEGII----PVH---S 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDMVLMGRSPHK---KML-----EQDNEQDYkIARemlekvdmLNYAKRSFST----LSGGEKQRVLLARTLAQQVKLL 160
Cdd:PRK11288 348 VADNINISARRHHlraGCLinnrwEAENADRF-IRS--------LNIKTPSREQlimnLSGGNQQKAILGRWLSEDMKVI 418
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNGNVVAN 216
Cdd:PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELaaqGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
6-229 |
2.14e-14 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 72.07 E-value: 2.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 6 ENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDmACELGV--VSQ 83
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE-ALENGIsmVHQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 84 FNHIAFDIKVEDMVLMGRSPHKKMLeQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILD 163
Cdd:PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMF-VDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 164 EPTNHLDIKYQIQILNLVKSLKTTA---VVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIK 229
Cdd:PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKERGcgiVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIA 228
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
14-218 |
2.44e-14 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 72.05 E-value: 2.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 14 NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQFNHIaFDIKV 93
Cdd:PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL-FSDTV 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 94 EDMVLMGRSphkkmlEQDNEQDYKIARemLEKV--DMLNYAKrSFST--------LSGGEKQRVLLARTLAQQVKLLILD 163
Cdd:PRK10789 406 ANNIALGRP------DATQQEIEHVAR--LASVhdDILRLPQ-GYDTevgergvmLSGGQKQRISIARALLLNAEILILD 476
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 164 EPTNHLDIKYQIQIL-NLVK-SLKTTAVVALHDLNlAAAYCDKLYVMHNGNVVANGE 218
Cdd:PRK10789 477 DALSAVDGRTEHQILhNLRQwGEGRTVIISAHRLS-ALTEASEILVMQHGHIAQRGN 532
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
18-217 |
3.21e-14 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 71.81 E-value: 3.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 18 VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP---IKDMACELGVVSQFNHIAFDIK-- 92
Cdd:PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSpgkLQALRRDIQFIFQDPYASLDPRqt 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDMVLMGRSPHKKMleqDNEQDYKIAREMLEKVDML-NYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI 171
Cdd:PRK10261 420 VGDSIMEPLRVHGLL---PGKAAAARVAWLLERVGLLpEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 499411747 172 KYQIQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNVVANG 217
Cdd:PRK10261 497 SIRGQIINLLLDLQRDFGIAYlfisHDMAVVERISHRVAVMYLGQIVEIG 546
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
33-228 |
4.00e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 70.65 E-value: 4.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 33 LIGPNGSGKSTLLKTIYRICKPESGAIYL-------------DGKNLLTMPIKD---MACELGVVSQF-NHIAFDIKVED 95
Cdd:PRK13631 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyigdkknnheLITNPYSKKIKNfkeLRRRVSMVFQFpEYQLFKDTIEK 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 96 MVLMGrsphKKMLEQDNEQDYKIAREMLEKVDM-LNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQ 174
Cdd:PRK13631 137 DIMFG----PVALGVKKSEAKKLAKFYLNKMGLdDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 175 IQILNLVKSLKT---TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLI 228
Cdd:PRK13631 213 HEMMQLILDAKAnnkTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHI 269
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
17-226 |
5.17e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 71.55 E-value: 5.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 17 IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQfNHIAFdikvEDM 96
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQ-SPVLF----SGT 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 97 VLMGRSPhkkmLEQDNEQDYkiaREMLEKVDMLNYAKRSF-----------STLSGGEKQRVLLARTLAQQVKLLILDEP 165
Cdd:PLN03232 1326 VRFNIDP----FSEHNDADL---WEALERAHIKDVIDRNPfgldaevseggENFSVGQRQLLSLARALLRRSKILVLDEA 1398
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499411747 166 TNHLDIKYQIQILNLVKS--LKTTAVVALHDLNLAAAyCDKLYVMHNGNVVANGEPKDILTSQ 226
Cdd:PLN03232 1399 TASVDVRTDSLIQRTIREefKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
31-213 |
5.52e-14 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 71.04 E-value: 5.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 31 VGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmpikdmaCELGVVSQFNHIAFDIKVEDMVLMGRS----PHKK 106
Cdd:PLN03073 538 IAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK-----------VRMAVFSQHHVDGLDLSSNPLLYMMRCfpgvPEQK 606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 107 MleqdneqdykiaREMLEKVDML-NYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLD---IKYQIQILNLvk 182
Cdd:PLN03073 607 L------------RAHLGSFGVTgNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDldaVEALIQGLVL-- 672
|
170 180 190
....*....|....*....|....*....|.
gi 499411747 183 sLKTTAVVALHDLNLAAAYCDKLYVMHNGNV 213
Cdd:PLN03073 673 -FQGGVLMVSHDEHLISGSVDELWVVSEGKV 702
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
24-215 |
6.19e-14 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 70.71 E-value: 6.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDmACELGV--VSQFNHIAFDIKVEDMVLMGR 101
Cdd:PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTA-ALAAGVaiIYQELHLVPEMTVAENLYLGQ 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 102 SPHKKMLeQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLV 181
Cdd:PRK11288 105 LPHKGGI-VNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183
|
170 180 190
....*....|....*....|....*....|....*..
gi 499411747 182 KSLKTTAVVAL---HDLNLAAAYCDKLYVMHNGNVVA 215
Cdd:PRK11288 184 RELRAEGRVILyvsHRMEEIFALCDAITVFKDGRYVA 220
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
9-228 |
6.55e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 70.58 E-value: 6.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 9 NVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNL-----LTMPIKDMAC------E 77
Cdd:PRK09700 270 NVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIsprspLDAVKKGMAYitesrrD 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 LGVVSQFNhIAFDIKVEDMVLMGRSPHKKML--EQDNEQDYKIAREMLE-KVDMLNyakRSFSTLSGGEKQRVLLARTLA 154
Cdd:PRK09700 350 NGFFPNFS-IAQNMAISRSLKDGGYKGAMGLfhEVDEQRTAENQRELLAlKCHSVN---QNITELSGGNQQKVLISKWLC 425
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 155 QQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL---HDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLI 228
Cdd:PRK09700 426 CCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILmvsSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEEI 502
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
23-228 |
1.03e-13 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 70.36 E-value: 1.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQfnhiafdikveDMVLMGRS 102
Cdd:TIGR00957 1307 VTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ-----------DPVLFSGS 1375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 103 PHKKM--LEQDNEQDYKIAREMLEKVDMLNY--AKRSFSTLSGGE------KQRVLLARTLAQQVKLLILDEPTNHLDIK 172
Cdd:TIGR00957 1376 LRMNLdpFSQYSDEEVWWALELAHLKTFVSAlpDKLDHECAEGGEnlsvgqRQLVCLARALLRKTKILVLDEATAAVDLE 1455
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499411747 173 YQiqilNLVKS-LKT-----TAVVALHDLNLAAAYCdKLYVMHNGNVVANGEPKDILTSQLI 228
Cdd:TIGR00957 1456 TD----NLIQStIRTqfedcTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLLQQRGI 1512
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
31-170 |
1.10e-13 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 70.15 E-value: 1.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 31 VGLIGPNGSGKSTLLKTIYRICKPESG-AIYLDGKN---LLTMPIKDMA------CELGV------VSQFNHI--AFDIK 92
Cdd:PRK11819 36 IGVLGLNGAGKSTLLRIMAGVDKEFEGeARPAPGIKvgyLPQEPQLDPEktvrenVEEGVaevkaaLDRFNEIyaAYAEP 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDM-VLMgrsphKKMLEQDNEQDYKIAREMLEKVDMLNYAKR------SFSTLSGGEKQRVLLARTLAQQVKLLILDEP 165
Cdd:PRK11819 116 DADFdALA-----AEQGELQEIIDAADAWDLDSQLEIAMDALRcppwdaKVTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
|
....*
gi 499411747 166 TNHLD 170
Cdd:PRK11819 191 TNHLD 195
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
3-170 |
1.38e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 67.52 E-value: 1.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMP------------ 70
Cdd:PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRdeyhqdllylgh 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 71 ---IKDmacELgvvSQFNHIAFDIKVEDmvlmgrsphkkmlEQDNEQdykiAREMLEKVDMLNYAKRSFSTLSGGEKQRV 147
Cdd:PRK13538 82 qpgIKT---EL---TALENLRFYQRLHG-------------PGDDEA----LWEALAQVGLAGFEDVPVRQLSAGQQRRV 138
|
170 180
....*....|....*....|...
gi 499411747 148 LLARTLAQQVKLLILDEPTNHLD 170
Cdd:PRK13538 139 ALARLWLTRAPLWILDEPFTAID 161
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
28-195 |
1.99e-13 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 67.78 E-value: 1.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 28 GEFVGLIGPNGSGKSTLLKTIYRICKPESGAI-----------YLDGKNLLTMPIKDMACELGVVSQFNHI-----AFDI 91
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFddppdwdeildEFRGSELQNYFTKLLEGDVKVIVKPQYVdlipkAVKG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 92 KVEDMvlmgrsphkkmLEQDNEQDYKiaREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI 171
Cdd:cd03236 106 KVGEL-----------LKKKDERGKL--DELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172
|
170 180
....*....|....*....|....*..
gi 499411747 172 KYQIQILNLVKSLKTTA---VVALHDL 195
Cdd:cd03236 173 KQRLNAARLIRELAEDDnyvLVVEHDL 199
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
5-171 |
2.81e-13 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 68.99 E-value: 2.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 5 VENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLdGKNLltmpikdmacELGVVSQf 84
Cdd:PRK11819 327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETV----------KLAYVDQ- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 85 NHIAFDikvedmvlmgrsPHKKMLEQ-DNEQDYkIareMLEKVDMLNYA-------------KRSfSTLSGGEKQRVLLA 150
Cdd:PRK11819 395 SRDALD------------PNKTVWEEiSGGLDI-I---KVGNREIPSRAyvgrfnfkggdqqKKV-GVLSGGERNRLHLA 457
|
170 180
....*....|....*....|.
gi 499411747 151 RTLAQQVKLLILDEPTNHLDI 171
Cdd:PRK11819 458 KTLKQGGNVLLLDEPTNDLDV 478
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
3-218 |
4.03e-13 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 66.74 E-value: 4.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTI-----YRIckpESGAIYLDGKNLLTMPIKDMACE 77
Cdd:PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLagredYEV---TGGTVEFKGKDLLELSPEDRAGE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 lGVVsqfnhIAFDIKVEdmvLMGRSPH----------KKMLEQDNEQDYKIAREMLEKVDMLNYAK----RSFST-LSGG 142
Cdd:PRK09580 79 -GIF-----MAFQYPVE---IPGVSNQfflqtalnavRSYRGQEPLDRFDFQDLMEEKIALLKMPEdlltRSVNVgFSGG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 143 EKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSL----KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGE 218
Cdd:PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLrdgkRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
18-211 |
6.83e-13 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 67.72 E-value: 6.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 18 VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDmACELGVVsqfnHIAFDIKVEDMV 97
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQD-GLANGIV----YISEDRKRDGLV 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 98 LmGRSPHKKM----LEQDNEQDYKI--AREMLEKVD---MLNYAKRSFST----LSGGEKQRVLLARTLAQQVKLLILDE 164
Cdd:PRK10762 343 L-GMSVKENMsltaLRYFSRAGGSLkhADEQQAVSDfirLFNIKTPSMEQaiglLSGGNQQKVAIARGLMTRPKVLILDE 421
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 499411747 165 PTNHLDI--KYQI-QILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNG 211
Cdd:PRK10762 422 PTRGVDVgaKKEIyQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
16-228 |
1.17e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 66.95 E-value: 1.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 16 KIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNL-LTMPIKDMACELGVVSQFNHIAFDIKVE 94
Cdd:PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVtFNGPKSSQEAGIGIIHQELNLIPQLTIA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 95 DMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQ 174
Cdd:PRK10762 98 ENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 175 IQILNLVKSLKTTA---VVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLI 228
Cdd:PRK10762 178 ESLFRVIRELKSQGrgiVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLI 234
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
15-219 |
1.50e-12 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 66.61 E-value: 1.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 15 KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTI-YRICK--PESGAIYLDGknlltMPI--KDMACELGVVSQFnhiaf 89
Cdd:TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALaFRSPKgvKGSGSVLLNG-----MPIdaKEMRAISAYVQQD----- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 DIKV------EDMVLMGrspHKKMlEQDNEQDYKIAR--EMLEKVDMLNYAKRSFST------LSGGEKQRVLLARTLAQ 155
Cdd:TIGR00955 108 DLFIptltvrEHLMFQA---HLRM-PRRVTKKEKRERvdEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLT 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 156 QVKLLILDEPTNHLDIKYQIQILNLVKSLKT---TAVVALHDLNlAAAYC--DKLYVMHNGNVVANGEP 219
Cdd:TIGR00955 184 DPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQkgkTIICTIHQPS-SELFElfDKIILMAEGRVAYLGSP 251
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
7-170 |
1.67e-12 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 66.58 E-value: 1.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 7 NINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRIcKPESGAiyldgkNLLTM---------PIKDMACE 77
Cdd:PRK10938 265 NGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD-HPQGYS------NDLTLfgrrrgsgeTIWDIKKH 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 LGVVSQFNHIAF--DIKVEDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMLNY-AKRSFSTLSGGEKQRVLLARTLA 154
Cdd:PRK10938 338 IGYVSSSLHLDYrvSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRtADAPFHSLSWGQQRLALIVRALV 417
|
170
....*....|....*.
gi 499411747 155 QQVKLLILDEPTNHLD 170
Cdd:PRK10938 418 KHPTLLILDEPLQGLD 433
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
2-222 |
2.11e-12 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 65.11 E-value: 2.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQlGNKKIVHNACIEVNKGEFVGLIGPNGSGKS----TLLKTIYRICKPESGAIYLDGKNLLtmpikdmACE 77
Cdd:PRK10418 4 QIELRNIALQ-AAQPLVHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVA-------PCA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 L-----GVVSQFNHIAFDiKVEDMVLMGRSPHKKMLEQDNEQdykIAREMLEKVDMLNYAK--RSFS-TLSGGEKQRVLL 149
Cdd:PRK10418 76 LrgrkiATIMQNPRSAFN-PLHTMHTHARETCLALGKPADDA---TLTAALEAVGLENAARvlKLYPfEMSGGMLQRMMI 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 150 ARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVAL----HDLNLAAAYCDKLYVMHNGNVVANGEPKDI 222
Cdd:PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMllvtHDMGVVARLADDVAVMSHGRIVEQGDVETL 228
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
28-219 |
3.11e-12 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 64.56 E-value: 3.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 28 GEFVGLIGPNGSGKSTLL-----KTIYRI----------CKPESGAIYLD----------GK----NLLTM-----PIKD 73
Cdd:cd03271 21 GVLTCVTGVSGSGKSSLIndtlyPALARRlhlkkeqpgnHDRIEGLEHIDkvividqspiGRtprsNPATYtgvfdEIRE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 MACELGVVSQFNHIAFDIKVEdmvlmGRSPHKkMLEQDNEQDY-------KIAREMLEKVDM-LNYAK--RSFSTLSGGE 143
Cdd:cd03271 101 LFCEVCKGKRYNRETLEVRYK-----GKSIAD-VLDMTVEEALeffenipKIARKLQTLCDVgLGYIKlgQPATTLSGGE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 144 KQRVLLARTLAQQVK---LLILDEPTNHL---DIKYQIQILNLVKSLKTTAVVALHDLNLAAAyCDklYVM--------H 209
Cdd:cd03271 175 AQRIKLAKELSKRSTgktLYILDEPTTGLhfhDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC-AD--WIIdlgpeggdG 251
|
250
....*....|
gi 499411747 210 NGNVVANGEP 219
Cdd:cd03271 252 GGQVVASGTP 261
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
20-194 |
4.48e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 65.36 E-value: 4.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 20 NACIEVNKGEFVGLIGPNGSGKSTLLKTIyrickpeSGAIYLD-GK----------NLLTMPIKDMAcelGVVSQF---- 84
Cdd:PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLDdGRiiyeqdlivaRLQQDPPRNVE---GTVYDFvaeg 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 85 -NHIAFDIKV--EDMVLMGRSPHKKMLEQ--------DNEQ----DYKIaREMLEKVDmLNyAKRSFSTLSGGEKQRVLL 149
Cdd:PRK11147 91 iEEQAEYLKRyhDISHLVETDPSEKNLNElaklqeqlDHHNlwqlENRI-NEVLAQLG-LD-PDAALSSLSGGWLRKAAL 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 499411747 150 ARTLAQQVKLLILDEPTNHLDIKyQIQIL-NLVKSLKTTAVVALHD 194
Cdd:PRK11147 168 GRALVSNPDVLLLDEPTNHLDIE-TIEWLeGFLKTFQGSIIFISHD 212
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
28-228 |
5.87e-12 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 64.69 E-value: 5.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 28 GEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTM-PIKdmACELGV--VSQFNHIAFDIKVEDMVLMGRSPH 104
Cdd:PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLtPAK--AHQLGIylVPQEPLLFPNLSVKENILFGLPKR 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 105 kkmleQDNEqdykiaREMLEKVDMLNYA---KRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLV 181
Cdd:PRK15439 115 -----QASM------QKMKQLLAALGCQldlDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 499411747 182 KSLKTTAVVAL---HDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLI 228
Cdd:PRK15439 184 RELLAQGVGIVfisHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDII 233
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
13-205 |
7.46e-12 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 64.81 E-value: 7.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 13 GNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIyrickpeSGAIYLDGKNLlTMPikdMACELGVVSQfNHIAFDIK 92
Cdd:PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALL-------KNEISADGGSY-TFP---GNWQLAWVNQ-ETPALPQP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDMVLMGRSPHKKM---LEQDNEQD--YKIA--REMLEKVDMLNYAKRSFSTL-----------------SGGEKQRVL 148
Cdd:PRK10636 80 ALEYVIDGDREYRQLeaqLHDANERNdgHAIAtiHGKLDAIDAWTIRSRAASLLhglgfsneqlerpvsdfSGGWRMRLN 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 149 LARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTAVVALHDLNLAAAYCDKL 205
Cdd:PRK10636 160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKI 216
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
23-219 |
7.93e-12 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 65.03 E-value: 7.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTmPIKDMACELGVVSQFNHIAFDIKVEDMVLM--- 99
Cdd:TIGR01257 951 ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFyaq 1029
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 100 --GRSPHKKMLEQDneqdykiarEMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQI 177
Cdd:TIGR01257 1030 lkGRSWEEAQLEME---------AMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI 1100
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 499411747 178 LNLVKSLKT--TAVVALHDLNLAAAYCDKLYVMHNGNVVANGEP 219
Cdd:TIGR01257 1101 WDLLLKYRSgrTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
24-219 |
8.51e-12 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 61.82 E-value: 8.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPikdmacelgvvsqfnhiafdikvedmvlmgrsp 103
Cdd:cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKP--------------------------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 104 hkkmleqdneqdykiaremlEKVDmlnyakrsfstLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKS 183
Cdd:cd03222 68 --------------------QYID-----------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR 116
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 499411747 184 L----KTTAVVALHDLNLAAAYCDKLYVMHngnvvanGEP 219
Cdd:cd03222 117 LseegKKTALVVEHDLAVLDYLSDRIHVFE-------GEP 149
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
12-217 |
1.14e-11 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 61.89 E-value: 1.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 12 LGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYrickpesgaiyldgknlltmpikdmacelgvvsqfNHIAFDI 91
Cdd:cd03233 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALA-----------------------------------NRTEGNV 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 92 KVEDMVLMGRSPHKKMLEQ-------DNEQDYKIA----REMLEKVDMLNyAKRSFSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:cd03233 62 SVEGDIHYNGIPYKEFAEKypgeiiyVSEEDVHFPtltvRETLDFALRCK-GNEFVRGISGGERKRVSIAEALVSRASVL 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499411747 161 ILDEPTNHLDIKYQIQILN----LVKSLKTTAVVALHDLNLAAAYC-DKLYVMHNGNVVANG 217
Cdd:cd03233 141 CWDNSTRGLDSSTALEILKcirtMADVLKTTTFVSLYQASDEIYDLfDKVLVLYEGRQIYYG 202
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
5-191 |
1.17e-11 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 64.11 E-value: 1.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 5 VENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKT--------IYRICK---PESGAIYLDGKNLLTMPIKD 73
Cdd:PLN03073 180 MENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYmamhaidgIPKNCQilhVEQEVVGDDTTALQCVLNTD 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 ------MACELGVVSQfnhiAFDIKVEDMVLMGRSPHKKMLEQDN-----EQDYKiareMLEKVDMLNYAKR-------- 134
Cdd:PLN03073 260 iertqlLEEEAQLVAQ----QRELEFETETGKGKGANKDGVDKDAvsqrlEEIYK----RLELIDAYTAEARaasilagl 331
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 135 SFS---------TLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILN-LVKSLKTTAVVA 191
Cdd:PLN03073 332 SFTpemqvkatkTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETyLLKWPKTFIVVS 398
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
23-212 |
1.59e-11 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 63.45 E-value: 1.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKST---LLKTIYRickPESGAIYLDGKnlltmPIkDMACELGVVSQFNHIAFDIKVEDmvlm 99
Cdd:PRK10522 344 LTIKRGELLFLIGGNGSGKSTlamLLTGLYQ---PQSGEILLDGK-----PV-TAEQPEDYRKLFSAVFTDFHLFD---- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 100 grsphkKMLEQDNEQ-DYKIAREMLEKVDM---LNYAKRSFST--LSGGEKQRVLLARTLAQQVKLLILDEPTNHLD--- 170
Cdd:PRK10522 411 ------QLLGPEGKPaNPALVEKWLERLKMahkLELEDGRISNlkLSKGQKKRLALLLALAEERDILLLDEWAADQDphf 484
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 499411747 171 --IKYQiQILNLVKSLKTTAVVALHDlnlaAAY---CDKLYVMHNGN 212
Cdd:PRK10522 485 rrEFYQ-VLLPLLQEMGKTIFAISHD----DHYfihADRLLEMRNGQ 526
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
2-210 |
2.78e-11 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 63.12 E-value: 2.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINVQLGNKK---IVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYL-DGKNLLTMPIKDMACE 77
Cdd:PTZ00265 382 KIQFKNVRFHYDTRKdveIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIInDSHNLKDINLKWWRSK 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 LGVVSQ-----FNHIAFDIKVEDMVLMGRSPHKKMLEQD--NEQDYKIAR------------------------------ 120
Cdd:PTZ00265 462 IGVVSQdpllfSNSIKNNIKYSLYSLKDLEALSNYYNEDgnDSQENKNKRnscrakcagdlndmsnttdsneliemrkny 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 121 EMLEKVDMLNYAKRSF--------------------STLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIK--YQIQ-- 176
Cdd:PTZ00265 542 QTIKDSEVVDVSKKVLihdfvsalpdkyetlvgsnaSKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKseYLVQkt 621
|
250 260 270
....*....|....*....|....*....|....
gi 499411747 177 ILNLVKSLKTTAVVALHDLNlAAAYCDKLYVMHN 210
Cdd:PTZ00265 622 INNLKGNENRITIIIAHRLS-TIRYANTIFVLSN 654
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
3-187 |
3.92e-11 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 59.86 E-value: 3.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGN-KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYL-DGKNLLTMPikdmacelgv 80
Cdd:cd03223 1 IELENLSLATPDgRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMpEGEDLLFLP---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 81 vsqfnhiafdikvedmvlmgrsphkkmleqdneQDYKIAREMLEkvDMLNYAkrSFSTLSGGEKQRVLLARTLAQQVKLL 160
Cdd:cd03223 71 ---------------------------------QRPYLPLGTLR--EQLIYP--WDDVLSGGEQQRLAFARLLLHKPKFV 113
|
170 180
....*....|....*....|....*..
gi 499411747 161 ILDEPTNHLDIKYQIQILNLVKSLKTT 187
Cdd:cd03223 114 FLDEATSALDEESEDRLYQLLKELGIT 140
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
24-216 |
6.19e-11 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 61.74 E-value: 6.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 24 EVNKGEFVGLIGPNGSGKSTLLKTI---YRickPESGAIYLDGKnlltmPIKDMACE-----LGVV-SQFnHIaFDikve 94
Cdd:COG4615 354 TIRRGELVFIVGGNGSGKSTLAKLLtglYR---PESGEILLDGQ-----PVTADNREayrqlFSAVfSDF-HL-FD---- 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 95 dmvlmgrsphkKMLEQDNEQDYKIAREMLEKVDM---LNYAKRSFST--LSGGEKQRVLLARTLAQQVKLLILDE----- 164
Cdd:COG4615 420 -----------RLLGLDGEADPARARELLERLELdhkVSVEDGRFSTtdLSQGQRKRLALLVALLEDRPILVFDEwaadq 488
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 165 -PTNHlDIKYQiQILNLVKSLKTTAVVALHD---LNLAaaycDKLYVMHNGNVVAN 216
Cdd:COG4615 489 dPEFR-RVFYT-ELLPELKARGKTVIAISHDdryFDLA----DRVLKMDYGKLVEL 538
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
23-214 |
2.87e-10 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 59.80 E-value: 2.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKT---IYrickPE---SGAIYLDGKNLLTMPIKD--------MACELGVVSQFNhIA 88
Cdd:NF040905 22 LSVREGEIHALCGENGAGKSTLMKVlsgVY----PHgsyEGEILFDGEVCRFKDIRDsealgiviIHQELALIPYLS-IA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 89 fdikvEDMVLmGRSPHKKMLEQDNEQdYKIAREMLEKVDMlnyaKRSFSTLSG----GEKQRVLLARTLAQQVKLLILDE 164
Cdd:NF040905 97 -----ENIFL-GNERAKRGVIDWNET-NRRARELLAKVGL----DESPDTLVTdigvGKQQLVEIAKALSKDVKLLILDE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 499411747 165 PTNHLDIKYQIQILNLVKSLKT---TAVVALHDLNLAAAYCDKLYVMHNGNVV 214
Cdd:NF040905 166 PTAALNEEDSAALLDLLLELKAqgiTSIIISHKLNEIRRVADSITVLRDGRTI 218
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
3-215 |
3.12e-10 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 59.80 E-value: 3.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINV---QLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIY------RIckpeSGAIYLDGKNLLTMPIKD 73
Cdd:NF040905 258 FEVKNWTVyhpLHPERKVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFgrsygrNI----SGTVFKDGKEVDVSTVSD 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 74 mACELGvvsqfnhIAF---DIKVEDMVLMG-----------RSPHKKMLEQDNEQdYKIAREMLEKVDMlnyakRSFS-- 137
Cdd:NF040905 334 -AIDAG-------LAYvteDRKGYGLNLIDdikrnitlanlGKVSRRGVIDENEE-IKVAEEYRKKMNI-----KTPSvf 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 138 ----TLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI--KYQI-QILN-LVKSLKTTAVVA--LHDLnlaAAYCDKLYV 207
Cdd:NF040905 400 qkvgNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVgaKYEIyTIINeLAAEGKGVIVISseLPEL---LGMCDRIYV 476
|
....*...
gi 499411747 208 MHNGNVVA 215
Cdd:NF040905 477 MNEGRITG 484
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
117-222 |
3.21e-10 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 60.03 E-value: 3.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 117 KIAREMLEKVDM-LNYAK--RSFSTLSGGEKQRVLLARTLAQQVK---LLILDEPTNHL---DIKYQIQILNLVKSLKTT 187
Cdd:TIGR00630 805 SISRKLQTLCDVgLGYIRlgQPATTLSGGEAQRIKLAKELSKRSTgrtLYILDEPTTGLhfdDIKKLLEVLQRLVDKGNT 884
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 499411747 188 AVVALHDLNL--AAAYCDKLYV---MHNGNVVANGEPKDI 222
Cdd:TIGR00630 885 VVVIEHNLDVikTADYIIDLGPeggDGGGTVVASGTPEEV 924
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
20-211 |
3.35e-10 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 58.11 E-value: 3.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 20 NACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACE----LGVVSQFNHIaFDIKVED 95
Cdd:cd03290 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRnrysVAYAAQKPWL-LNATVEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 96 MVLMGrSPHkkmleqdNEQDYKIARE---MLEKVDMLNYAKRS-----FSTLSGGEKQRVLLARTLAQQVKLLILDEPTN 167
Cdd:cd03290 98 NITFG-SPF-------NKQRYKAVTDacsLQPDIDLLPFGDQTeigerGINLSGGQRQRICVARALYQNTNIVFLDDPFS 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 499411747 168 HLDIK-----YQIQILNLVKSLKTTAVVALHDLNLaAAYCDKLYVMHNG 211
Cdd:cd03290 170 ALDIHlsdhlMQEGILKFLQDDKRTLVLVTHKLQY-LPHADWIIAMKDG 217
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
3-216 |
9.42e-10 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 58.40 E-value: 9.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENI---NVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPES-GAIYLDGKnlltmPIKDMACEL 78
Cdd:PRK13549 260 LEVRNLtawDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWeGEIFIDGK-----PVKIRNPQQ 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 79 GVVsqfNHIAF---DIKVEDMV-LMG-----------RSPHKKMLEQDNEQDYkIAREMLE-KVD----MLnyakrSFST 138
Cdd:PRK13549 335 AIA---QGIAMvpeDRKRDGIVpVMGvgknitlaaldRFTGGSRIDDAAELKT-ILESIQRlKVKtaspEL-----AIAR 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 139 LSGGEKQRVLLARTLAQQVKLLILDEPTNHLDI--KYQI-QILN-LVKSLKTTAVVAlHDLNLAAAYCDKLYVMHNGNVV 214
Cdd:PRK13549 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVgaKYEIyKLINqLVQQGVAIIVIS-SELPEVLGLSDRVLVMHEGKLK 484
|
..
gi 499411747 215 AN 216
Cdd:PRK13549 485 GD 486
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
23-228 |
1.30e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 57.72 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLlktiyrickpesgAIYLDGKNLLtmpikdMACELgvVSQFNHIAfdikvedmvLMGRS 102
Cdd:PRK10938 24 LTLNAGDSWAFVGANGSGKSAL-------------ARALAGELPL------LSGER--QSQFSHIT---------RLSFE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 103 PHKKMLE---QDNEQDY---------KIAREM-LEKVD----MLNYAK---------RSFSTLSGGEKQRVLLARTLAQQ 156
Cdd:PRK10938 74 QLQKLVSdewQRNNTDMlspgeddtgRTTAEIiQDEVKdparCEQLAQqfgitalldRRFKYLSTGETRKTLLCQALMSE 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499411747 157 VKLLILDEPTNHLDIKYQIQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLI 228
Cdd:PRK10938 154 PDLLILDEPFDGLDVASRQQLAELLASLhqsGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQALV 228
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
18-230 |
1.55e-09 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 57.59 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 18 VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLtmpikdMACELGVVSQFNHIafdikvEDMV 97
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL------IAISSGLNGQLTGI------ENIE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 98 LMGRsphkkMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQI 177
Cdd:PRK13545 108 LKGL-----MMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 178 L---NLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILT--SQLIKE 230
Cdd:PRK13545 183 LdkmNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDhyDEFLKK 240
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
3-170 |
1.78e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 55.73 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLltmpIKDMAC---ELG 79
Cdd:PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI----KKDLCTyqkQLC 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 80 VVSQFNHIAFDIKVEDMVLMGRSPHKKMLEQDneqdykiarEMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKL 159
Cdd:PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGIT---------ELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKL 148
|
170
....*....|.
gi 499411747 160 LILDEPTNHLD 170
Cdd:PRK13540 149 WLLDEPLVALD 159
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
15-216 |
1.81e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 57.53 E-value: 1.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 15 KKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPE-SGAIYLDGKNLLTM-PIKDMACELGVVSQ---FNHIAF 89
Cdd:TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPVDIRnPAQAIRAGIAMVPEdrkRHGIVP 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 90 DIKV-EDMVLMGRSPHKKMLEQDNEQDYKIAREMLEKVDMlnyakRSFS------TLSGGEKQRVLLARTLAQQVKLLIL 162
Cdd:TIGR02633 353 ILGVgKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV-----KTASpflpigRLSGGNQQKAVLAKMLLTNPRVLIL 427
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 163 DEPTNHLDI--KYQI-QILNLVKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVAN 216
Cdd:TIGR02633 428 DEPTRGVDVgaKYEIyKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD 484
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
25-222 |
2.92e-09 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 57.10 E-value: 2.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 25 VNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVSQfNHIAFDIKVedmvlmgRSPH 104
Cdd:PTZ00243 1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQ-DPVLFDGTV-------RQNV 1404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 105 KKMLEQDNEQDY----------KIAREMlEKVDM------LNYakrsfstlSGGEKQRVLLARTLAQQVKLLIL-DEPTN 167
Cdd:PTZ00243 1405 DPFLEASSAEVWaalelvglreRVASES-EGIDSrvleggSNY--------SVGQRQLMCMARALLKKGSGFILmDEATA 1475
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 499411747 168 HLDIKYQIQILNLVKSLKT--TAVVALHDLNLAAAYcDKLYVMHNGNVVANGEPKDI 222
Cdd:PTZ00243 1476 NIDPALDRQIQATVMSAFSayTVITIAHRLHTVAQY-DKIIVMDHGAVAEMGSPREL 1531
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
35-217 |
3.70e-09 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 56.04 E-value: 3.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 35 GPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIK-DMACE---LGVVSQ----FNHIafdiKVEDMVLMGrsphkk 106
Cdd:PRK11144 31 GRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGiCLPPEkrrIGYVFQdarlFPHY----KVRGNLRYG------ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 107 MLEQDNEQDYKIaremlekVDMLNYA---KRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILN---- 179
Cdd:PRK11144 101 MAKSMVAQFDKI-------VALLGIEpllDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPyler 173
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 499411747 180 LVKSLKTTAVVALHDLN----LAaaycDKLYVMHNGNVVANG 217
Cdd:PRK11144 174 LAREINIPILYVSHSLDeilrLA----DRVVVLEQGKVKAFG 211
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
27-185 |
4.21e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.92 E-value: 4.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 27 KGEFVGLIGPNGSGKSTLLKTIYRICKPES-GAIYLDGKNLltmpikdmacelgvvsqfnhiafdikvedmvlmgrsphk 105
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGgGVIYIDGEDI--------------------------------------- 41
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 106 kmleqdneqdykiaREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLK 185
Cdd:smart00382 42 --------------LEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
14-182 |
6.73e-09 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 55.91 E-value: 6.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 14 NKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGK-NLLTMPIKDMaceLGVVSQFNHIAFDIK 92
Cdd:TIGR00954 464 GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKgKLFYVPQRPY---MTLGTLRDQIIYPDS 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 93 VEDMVLMGRSphkkmlEQDNEQdykiareMLEKVDMLNYAKR--SFST-------LSGGEKQRVLLARTLAQQVKLLILD 163
Cdd:TIGR00954 541 SEDMKRRGLS------DKDLEQ-------ILDNVQLTHILERegGWSAvqdwmdvLSGGEKQRIAMARLFYHKPQFAILD 607
|
170
....*....|....*....
gi 499411747 164 EPTNHLDIKYQIQILNLVK 182
Cdd:TIGR00954 608 ECTSAVSVDVEGYMYRLCR 626
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
49-226 |
7.60e-09 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 55.79 E-value: 7.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 49 YRIC--------KPESGAIYLDGKNL---LTMPIKDMacelgvvsqfnhIAFDikvEDMVLmgrsphkkmleqdNEQDYK 117
Cdd:TIGR00630 405 ERPCpscggtrlKPEALAVTVGGKSIadvSELSIREA------------HEFF---NQLTL-------------TPEEKK 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 118 IAREMLEK--------VDM-LNY--AKRSFSTLSGGEKQRVLLARTLAQQVK--LLILDEPTNHL---DIKYQIQILNLV 181
Cdd:TIGR00630 457 IAEEVLKEirerlgflIDVgLDYlsLSRAAGTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSIGLhqrDNRRLINTLKRL 536
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 499411747 182 KSLKTTAVVALHDLN-LAAAycDKLYVM------HNGNVVANGEPKDILTSQ 226
Cdd:TIGR00630 537 RDLGNTLIVVEHDEDtIRAA--DYVIDIgpgageHGGEVVASGTPEEILANP 586
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
25-179 |
8.20e-09 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 54.08 E-value: 8.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 25 VNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTmpiKDMACELGVVSQFNHIAFDIK-VEDM----VLM 99
Cdd:PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRSRFMAYLGHLPGLKADLStLENLhflcGLH 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 100 GRSPHkkmleqdneqdyKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKyQIQILN 179
Cdd:PRK13543 111 GRRAK------------QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE-GITLVN 177
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
9-211 |
9.30e-09 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 54.86 E-value: 9.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 9 NVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmpikdmaceLGVVSQFNHIa 88
Cdd:cd03291 44 NLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-------------ISFSSQFSWI- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 89 FDIKVEDMVLMGRSPhkkmleqdNEQDYK--IAREMLEKvDMLNYAKRSFS-------TLSGGEKQRVLLARTLAQQVKL 159
Cdd:cd03291 110 MPGTIKENIIFGVSY--------DEYRYKsvVKACQLEE-DITKFPEKDNTvlgeggiTLSGGQRARISLARAVYKDADL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 160 LILDEPTNHLDIKYQIQILN--LVKSL--KTTAVVALHDLNLAAAycDKLYVMHNG 211
Cdd:cd03291 181 YLLDSPFGYLDVFTEKEIFEscVCKLManKTRILVTSKMEHLKKA--DKILILHEG 234
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
9-211 |
1.09e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 55.30 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 9 NVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKnlltmpikdmaceLGVVSQFNHIa 88
Cdd:TIGR01271 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR-------------ISFSPQTSWI- 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 89 FDIKVEDMVLMGRSPhkkmleqdNEQDYK--IAREMLEKvDMLNYAKRSFS-------TLSGGEKQRVLLARTLAQQVKL 159
Cdd:TIGR01271 499 MPGTIKDNIIFGLSY--------DEYRYTsvIKACQLEE-DIALFPEKDKTvlgeggiTLSGGQRARISLARAVYKDADL 569
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 160 LILDEPTNHLDIKYQIQILN--LVKSL--KTTAVVALHDLNLAAAycDKLYVMHNG 211
Cdd:TIGR01271 570 YLLDSPFTHLDVVTEKEIFEscLCKLMsnKTRILVTSKLEHLKKA--DKILLLHEG 623
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
56-226 |
1.88e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 54.65 E-value: 1.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 56 SGAIYLDGKNLLTMPIKDMACELGVVSQfNHIAFDIKVEDMVLMGRsphkkmlEQDNEQDYKIAREMLEKVDMLNYAKRS 135
Cdd:PTZ00265 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQ-EPMLFNMSIYENIKFGK-------EDATREDVKRACKFAAIDEFIESLPNK 1347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 136 FST--------LSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLVKSLKTTA---VVALHDLNLAAAYCDK 204
Cdd:PTZ00265 1348 YDTnvgpygksLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAdktIITIAHRIASIKRSDK 1427
|
170 180
....*....|....*....|....*..
gi 499411747 205 LYVMHNGN-----VVANGEPKDILTSQ 226
Cdd:PTZ00265 1428 IVVFNNPDrtgsfVQAHGTHEELLSVQ 1454
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
10-226 |
5.05e-08 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 52.22 E-value: 5.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 10 VQLGNKKIVHNACIE---------------VNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDM 74
Cdd:cd03288 14 VGLGGEIKIHDLCVRyennlkpvlkhvkayIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 75 ACELGVVSQfnhiafdikveDMVLMGRS------PHKKMLEQDNEQDYKIA--REMLEKVD-----MLNYAKRSFSTlsg 141
Cdd:cd03288 94 RSRLSIILQ-----------DPILFSGSirfnldPECKCTDDRLWEALEIAqlKNMVKSLPggldaVVTEGGENFSV--- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 142 GEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQiqilNLVKSLKTTA-----VVALHDLNLAAAYCDKLYVMHNGNVVAN 216
Cdd:cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATE----NILQKVVMTAfadrtVVTIAHRVSTILDADLVLVLSRGILVEC 235
|
250
....*....|
gi 499411747 217 GEPKDILTSQ 226
Cdd:cd03288 236 DTPENLLAQE 245
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
53-225 |
5.15e-08 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 53.11 E-value: 5.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 53 KPESGAIYLDGKN---LLTMPIKDMacelgvvsqfnhIAFdikVEDMVLmgrsphkkmleqdNEQDYKIAREML-EKVDM 128
Cdd:COG0178 414 KPEALAVKIGGKNiaeLTALSIDEA------------LEF---FENLEL-------------TEREAEIAERILkEIRSR 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 129 LNYAK----------RSFSTLSGGEKQRVLLARTL-AQQVKLL-ILDEPT-------NHldikyqiqilNLVKSLKT--- 186
Cdd:COG0178 466 LGFLVdvgldyltldRSAGTLSGGEAQRIRLATQIgSGLVGVLyVLDEPSiglhqrdND----------RLIETLKRlrd 535
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 499411747 187 ---TAVVALHDLN--LAAaycDklYVM--------HNGNVVANGEPKDILTS 225
Cdd:COG0178 536 lgnTVIVVEHDEDtiRAA---D--YIIdigpgageHGGEVVAQGTPEEILKN 582
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
3-226 |
5.57e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 52.81 E-value: 5.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQlgNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLL-TMPIKDMACELGVV 81
Cdd:PRK10982 251 LEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINnHNANEAINHGFALV 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQ---------FNHIAFDIKVEDMvlmgRSPHKKMLEQDNEqdyKIAREMLEKVDMLNYAKRSFST----LSGGEKQRVL 148
Cdd:PRK10982 329 TEerrstgiyaYLDIGFNSLISNI----RNYKNKVGLLDNS---RMKSDTQWVIDSMRVKTPGHRTqigsLSGGNQQKVI 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 149 LARTLAQQVKLLILDEPTNHLDI--KYQIQ--ILNLVKSLKTTAVVALHDLNLAAAyCDKLYVMHNGNVVANGEPKDilT 224
Cdd:PRK10982 402 IGRWLLTQPEILMLDEPTRGIDVgaKFEIYqlIAELAKKDKGIIIISSEMPELLGI-TDRILVMSNGLVAGIVDTKT--T 478
|
..
gi 499411747 225 SQ 226
Cdd:PRK10982 479 TQ 480
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
28-193 |
6.23e-08 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 52.96 E-value: 6.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 28 GEFVGLIGPNGSGKSTLLKTIY-RICKPE-SGAIYLDGKNlltmPIKDMACELGVVSQFNHIAFDIKV-EDMVLMG--RS 102
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAgRIQGNNfTGTILANNRK----PTKQILKRTGFVTQDDILYPHLTVrETLVFCSllRL 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 103 PhKKMLEQDNEQ--DYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNL 180
Cdd:PLN03211 170 P-KSLTKQEKILvaESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248
|
170
....*....|....*.
gi 499411747 181 VKSLK---TTAVVALH 193
Cdd:PLN03211 249 LGSLAqkgKTIVTSMH 264
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
2-195 |
9.57e-08 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 50.40 E-value: 9.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENINvqlgnkkivhNACIEVNKGEFVGLIGPNGSGKSTLLKTIyrickpesgaIYLDGKNLLtmpIKDmaceLGVV 81
Cdd:cd03238 5 GANVHNLQ----------NLDVSIPLNVLVVVTGVSGSGKSTLVNEG----------LYASGKARL---ISF----LPKF 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQFNHIAFDiKVEDMVLMGrsphkkmleqdneqdykiaremlekvdmLNYAK--RSFSTLSGGEKQRVLLARTLAQQVK- 158
Cdd:cd03238 58 SRNKLIFID-QLQFLIDVG----------------------------LGYLTlgQKLSTLSGGELQRVKLASELFSEPPg 108
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 499411747 159 -LLILDEPTNHLDIKYQIQILNLVKSL---KTTAVVALHDL 195
Cdd:cd03238 109 tLFILDEPSTGLHQQDINQLLEVIKGLidlGNTVILIEHNL 149
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
94-224 |
1.49e-07 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 51.27 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 94 EDMVLMGRSphkkmLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKY 173
Cdd:NF000106 105 ENLYMIGR*-----LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRT 179
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 499411747 174 QIQILNLVKSL---KTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILT 224
Cdd:NF000106 180 RNEVWDEVRSMvrdGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKT 233
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
31-224 |
2.03e-07 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 51.28 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 31 VGLIGPNGSGKSTLLKTIYRICKPESGAIY-LDGknlltmpikDMA--------CElgvvsqfnHIAF-----------D 90
Cdd:NF033858 30 VGLIGPDGVGKSSLLSLIAGARKIQQGRVEvLGG---------DMAdarhrravCP--------RIAYmpqglgknlypT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 91 IKVEDMV-----LMGRSPHkkmleqdnEQDYKIArEMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEP 165
Cdd:NF033858 93 LSVFENLdffgrLFGQDAA--------ERRRRID-ELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEP 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 166 TNHLDIKYQIQILNLVKSLKT-----TAVValhdlnlAAAY------CDKLYVMHNGNVVANGEPKDILT 224
Cdd:NF033858 164 TTGVDPLSRRQFWELIDRIRAerpgmSVLV-------ATAYmeeaerFDWLVAMDAGRVLATGTPAELLA 226
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
8-184 |
7.70e-07 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 48.01 E-value: 7.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 8 INVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLL------KTIYRIckpeSGAIYLDGKNLltmpIKDMACELGVV 81
Cdd:cd03232 13 VPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLdvlagrKTAGVI----TGEILINGRPL----DKNFQRSTGYV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQfnhiaFDIkvedmvlmgrspHKKMLEqdneqdykiAREMLEkvdmlnyakrsFST----LSGGEKQRVLLARTLAQQV 157
Cdd:cd03232 85 EQ-----QDV------------HSPNLT---------VREALR-----------FSAllrgLSVEQRKRLTIGVELAAKP 127
|
170 180
....*....|....*....|....*..
gi 499411747 158 KLLILDEPTNHLDIKYQIQILNLVKSL 184
Cdd:cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKL 154
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
135-181 |
1.19e-06 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 49.25 E-value: 1.19e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 499411747 135 SFSTLSGGEKQRVLLARTLAQQVK---LLILDEPTNHL---DIKYQIQILN-LV 181
Cdd:COG0178 823 PATTLSGGEAQRVKLASELSKRSTgktLYILDEPTTGLhfhDIRKLLEVLHrLV 876
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
53-225 |
1.65e-06 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 48.53 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 53 KPESGAIYLDGKN---LLTMPIKDmacelgvvsqfnHIAFdikVEDMVLmgrsphkkmleqdNEQDYKIAREMLEKVDM- 128
Cdd:PRK00349 418 KPEALAVKVGGKNigeVSELSIGE------------ALEF---FENLKL-------------SEQEAKIAEPILKEIREr 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 129 --------LNYA--KRSFSTLSGGEKQRVllaRtLAQQVK------LLILDEPTNHLdikYQIQILNLVKSLK------T 186
Cdd:PRK00349 470 lkflvdvgLDYLtlSRSAGTLSGGEAQRI---R-LATQIGsgltgvLYVLDEPSIGL---HQRDNDRLIETLKhlrdlgN 542
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 499411747 187 TAVVALHDLN--LAAaycDklYV--------MHNGNVVANGEPKDILTS 225
Cdd:PRK00349 543 TLIVVEHDEDtiRAA---D--YIvdigpgagVHGGEVVASGTPEEIMKN 586
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
134-217 |
2.10e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 47.25 E-value: 2.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 134 RSFSTLSGGEKQRVLLARTLAQQVK--LLILDEPTNHL---DIKYQIQILNLVKSLKTTAVVALHDLNLAAAyCDKLYVM 208
Cdd:cd03270 133 RSAPTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSIGLhprDNDRLIETLKRLRDLGNTVLVVEHDEDTIRA-ADHVIDI 211
|
90
....*....|....*
gi 499411747 209 ------HNGNVVANG 217
Cdd:cd03270 212 gpgagvHGGEIVAQG 226
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
2-200 |
2.10e-06 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 47.22 E-value: 2.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENInvqlgnKKIVHNACIEVNKGEFVgLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLltmpiKDMACELGVV 81
Cdd:cd03240 3 KLSIRNI------RSFHERSEIEFFSPLTL-IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHD-----PKLIREGEVR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 82 SQfnhiafdIKVEdmvlmgrsphkkmLEQDNEQDYKIARE--MLEKV------DMLNYAKRSFSTLSGGEKQ------RV 147
Cdd:cd03240 71 AQ-------VKLA-------------FENANGKKYTITRSlaILENVifchqgESNWPLLDMRGRCSGGEKVlasliiRL 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 148 LLARTLAQQVKLLILDEPTNHLDI-KYQIQILNLVKSLKTTAV----VALHDLNLAAA 200
Cdd:cd03240 131 ALAETFGSNCGILALDEPTTNLDEeNIEESLAEIIEERKSQKNfqliVITHDEELVDA 188
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
134-223 |
6.29e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 47.13 E-value: 6.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 134 RSFSTLSGGEKQRVLLARTLAQQVK---LLILDEPTNHL---DIKYQIQILNLVKSLKTTAVVALHDLNLAAAyCDklYV 207
Cdd:PRK00635 805 RPLSSLSGGEIQRLKLAYELLAPSKkptLYVLDEPTTGLhthDIKALIYVLQSLTHQGHTVVIIEHNMHVVKV-AD--YV 881
|
90 100
....*....|....*....|....
gi 499411747 208 MH--------NGNVVANGEPKDIL 223
Cdd:PRK00635 882 LElgpeggnlGGYLLASCSPEELI 905
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
18-170 |
9.21e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 46.48 E-value: 9.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 18 VHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGknlltmpikdmacELGVVSQFNHIAFDiKVEDMV 97
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQND-SLRENI 719
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499411747 98 LMGRSPHKKMLEQDNEQDYKIAR-EMLEKVDMLNYAKRSFStLSGGEKQRVLLARTLAQQVKLLILDEPTNHLD 170
Cdd:TIGR00957 720 LFGKALNEKYYQQVLEACALLPDlEILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
11-227 |
1.10e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 46.31 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 11 QLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDgKNLLTMPikDMACELGVVSQFNHIAFD 90
Cdd:PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-RSIAYVP--QQAWIMNATVRGNILFFD 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 91 ikVEDMVLMGRSPHKKMLEQDNEQ-DYKIAREMLEK-VDmlnyakrsfstLSGGEKQRVLLARTLAQQVKLLILDEPTNH 168
Cdd:PTZ00243 746 --EEDAARLADAVRVSQLEADLAQlGGGLETEIGEKgVN-----------LSGGQKARVSLARAVYANRDVYLLDDPLSA 812
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499411747 169 LDIKYQIQILN--LVKSLK-TTAVVALHDLNLaAAYCDKLYVMHNGNVVANGEPKDILTSQL 227
Cdd:PTZ00243 813 LDAHVGERVVEecFLGALAgKTRVLATHQVHV-VPRADYVVALGDGRVEFSGSSADFMRTSL 873
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
117-181 |
2.07e-05 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 45.45 E-value: 2.07e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499411747 117 KIAREMLEKVDM-LNYAK--RSFSTLSGGEKQRVLLARTLAqqvK------LLILDEPTNHL---DIKYQIQILN-LV 181
Cdd:PRK00349 806 KIARKLQTLVDVgLGYIKlgQPATTLSGGEAQRVKLAKELS---KrstgktLYILDEPTTGLhfeDIRKLLEVLHrLV 880
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
1-184 |
3.06e-05 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 44.61 E-value: 3.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 1 MKLSveniNVQLGNKKIVHNACIEVNKGeFVGLIGPNGSGKSTLLKTIYRICKPESGA------IYLDGKNL-------- 66
Cdd:COG3593 1 MKLE----KIKIKNFRSIKDLSIELSDD-LTVLVGENNSGKSSILEALRLLLGPSSSRkfdeedFYLGDDPDlpeieiel 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 67 -LTMPIKDMACELGVVSQFNHIAFDIK----------------VEDMVLMGRSPHKKMLEQDNEQDYKIAREMleKVDML 129
Cdd:COG3593 76 tFGSLLSRLLRLLLKEEDKEELEEALEelneelkealkalnelLSEYLKELLDGLDLELELSLDELEDLLKSL--SLRIE 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499411747 130 NYAKRSFSTLSGGEKQRVLLA--RTLAQ-----QVKLLILDEPTNHLDIKYQIQILNLVKSL 184
Cdd:COG3593 154 DGKELPLDRLGSGFQRLILLAllSALAElkrapANPILLIEEPEAHLHPQAQRRLLKLLKEL 215
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
134-225 |
4.37e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 44.43 E-value: 4.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 134 RSFSTLSGGEKQRVLLARTLAQQVK--LLILDEPTNHLDIKYQIQILNLVKSLK---TTAVVALHDLNLaAAYCDKLY-- 206
Cdd:PRK00635 472 RALATLSGGEQERTALAKHLGAELIgiTYILDEPSIGLHPQDTHKLINVIKKLRdqgNTVLLVEHDEQM-ISLADRIIdi 550
|
90 100
....*....|....*....|...
gi 499411747 207 ----VMHNGNVVANGEPKDILTS 225
Cdd:PRK00635 551 gpgaGIFGGEVLFNGSPREFLAK 573
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
30-73 |
4.84e-05 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 43.53 E-value: 4.84e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 499411747 30 FVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKD 73
Cdd:pfam13304 1 INVLIGPNGSGKSNLLEALRFLADFDALVIGLTDERSRNGGIGG 44
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
20-217 |
8.06e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 43.57 E-value: 8.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 20 NACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGA-IYLDGKnlltmpikdmaceLGVVSQFNHIaFDIKVEDMVL 98
Cdd:PLN03130 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAsVVIRGT-------------VAYVPQVSWI-FNATVRDNIL 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 99 MG---------RSPHKKMLEQDneqdykiaREMLEKVDMLNYAKRSFStLSGGEKQRVLLARTLAQQVKLLILDEPTNHL 169
Cdd:PLN03130 701 FGspfdperyeRAIDVTALQHD--------LDLLPGGDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 499411747 170 DIKYQIQILNlvKSLK-----TTAVVALHDLNLaAAYCDKLYVMHNGNVVANG 217
Cdd:PLN03130 772 DAHVGRQVFD--KCIKdelrgKTRVLVTNQLHF-LSQVDRIILVHEGMIKEEG 821
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
20-211 |
1.36e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 42.79 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 20 NACIevNKGEFVGLIGPNGSGKSTLLKTI----YRICKPESGAIYLDGKNLLTMpIKDMACELGVVSQ----FNHIAFDI 91
Cdd:TIGR00956 81 DGLI--KPGELTVVLGRPGSGCSTLLKTIasntDGFHIGVEGVITYDGITPEEI-KKHYRGDVVYNAEtdvhFPHLTVGE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 92 KVEDMVLMgRSPHKKMLEQDnEQDYkiaREMLEKVDMLNYAKR-SFST---------LSGGEKQRVLLARTLAQQVKLLI 161
Cdd:TIGR00956 158 TLDFAARC-KTPQNRPDGVS-REEY---AKHIADVYMATYGLShTRNTkvgndfvrgVSGGERKRVSIAEASLGGAKIQC 232
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 499411747 162 LDEPTNHLDIKYQIQIlnlVKSLKTTAVVaLHDLNLAAAY-C--------DKLYVMHNG 211
Cdd:TIGR00956 233 WDNATRGLDSATALEF---IRALKTSANI-LDTTPLVAIYqCsqdayelfDKVIVLYEG 287
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
23-208 |
1.98e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 40.81 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKTIyrickpesgaIYldgknlltmpikdmacelgvvsqfnhiafdikvedmVLMGRS 102
Cdd:cd03227 16 VTFGEGSLTIITGPNGSGKSTILDAI----------GL------------------------------------ALGGAQ 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 103 PHKKMLEQDNEQDYKIAREMlekvdMLNYakrSFSTLSGGEKQRVLLARTLA----QQVKLLILDEPTNHLDIKYQIQIL 178
Cdd:cd03227 50 SATRRRSGVKAGCIVAAVSA-----ELIF---TRLQLSGGEKELSALALILAlaslKPRPLYILDEIDRGLDPRDGQALA 121
|
170 180 190
....*....|....*....|....*....|...
gi 499411747 179 NLVKSL---KTTAVVALHDLNLAAAYcDKLYVM 208
Cdd:cd03227 122 EAILEHlvkGAQVIVITHLPELAELA-DKLIHI 153
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
3-181 |
2.72e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 40.63 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 3 LSVENINVQLgNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLdgKNLLTMPIKDMACelgvvs 82
Cdd:PRK13541 2 LSLHQLQFNI-EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY--KNCNINNIAKPYC------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 83 qfNHIAFDIKVEdmvlmgrsphkkmLEQDNEQDYKIAREMLEKVDMLNYAKRSFS----------TLSGGEKQRVLLART 152
Cdd:PRK13541 73 --TYIGHNLGLK-------------LEMTVFENLKFWSEIYNSAETLYAAIHYFKlhdlldekcySLSSGMQKIVAIARL 137
|
170 180
....*....|....*....|....*....
gi 499411747 153 LAQQVKLLILDEPTNHLDIKYQIQILNLV 181
Cdd:PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLI 166
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
33-184 |
7.73e-04 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 39.98 E-value: 7.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 33 LIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMACELGVVS------QFNHIAFDIKVEDM---------- 96
Cdd:COG3950 30 LVGENGSGKTTLLEAIALALSGLLSRLDDVKFRKLLIRNGEFGDSAKLILyygtsrLLLDGPLKKLERLKeeyfsrldgy 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 97 --VLMGRSPHKKM----------LEQDNEQDY--------KIAREMLEKVDMLNY--------------AKRSFSTLSGG 142
Cdd:COG3950 110 dsLLDEDSNLREFlewlreyledLENKLSDELdekleavrEALNKLLPDFKDIRIdrdpgrlvildkngEELPLNQLSDG 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 499411747 143 EKQRV----LLARTLAQQVK----------LLILDEPTNHLDIKYQIQILNLVKSL 184
Cdd:COG3950 190 ERSLLalvgDLARRLAELNPalenplegegIVLIDEIDLHLHPKWQRRILPDLRKI 245
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
23-197 |
8.75e-04 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 40.07 E-value: 8.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 23 IEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIYLDGKNLLTMPIKDMAcelgvvsqFNHIAFDIKVEDMVLMGRS 102
Cdd:pfam13304 133 SELSDLISGLLLLSIISPLSFLLLLDEGLLLEDWAVLDLAADLALFPDLKELL--------QRLVRGLKLADLNLSDLGE 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 103 PHKKMLEQDNEQDYKIAREMLEKvdmlNYAKRSFSTLSGGEKQ--RVLLA-RTLAQQVKLLILDEPTNHLDIKYQIQILN 179
Cdd:pfam13304 205 GIEKSLLVDDRLRERGLILLENG----GGGELPAFELSDGTKRllALLAAlLSALPKGGLLLIDEPESGLHPKLLRRLLE 280
|
170 180
....*....|....*....|.
gi 499411747 180 LVKSLKTTA---VVALHDLNL 197
Cdd:pfam13304 281 LLKELSRNGaqlILTTHSPLL 301
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
2-181 |
3.89e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 37.64 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 2 KLSVENInvqlgnkKIVHNACIEVNKgeFVGLIGPNGSGKSTLLKTIYRICKpeSGAIYL----DGKNLLTMPIKDMACE 77
Cdd:COG4938 3 SISIKNF-------GPFKEAELELKP--LTLLIGPNGSGKSTLIQALLLLLQ--SNFIYLpaerSGPARLYPSLVRELSD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 78 LGVVSQFNhIAFDIKVEDMVLMGRSPhKKMLEQDNEQDYKIAREMLEKVDMLNYAKRSFSTLSGGEKQR----------- 146
Cdd:COG4938 72 LGSRGEYT-ADFLAELENLEILDDKS-KELLEQVEEWLEKIFPGKVEVDASSDLVRLVFRPSGNGKRIPlsnvgsgvsel 149
|
170 180 190
....*....|....*....|....*....|....*...
gi 499411747 147 ---VLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLV 181
Cdd:COG4938 150 lpiLLALLSAAKPGSLLIIEEPEAHLHPKAQSALAELL 187
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
111-190 |
4.58e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 37.96 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 111 DNEQDYKIA---REMLEKVDmlnyakrsfsTLSGGEKQ------RVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNLV 181
Cdd:PRK01156 781 DVDQDFNITvsrGGMVEGID----------SLSGGEKTavafalRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDII 850
|
90
....*....|
gi 499411747 182 K-SLKTTAVV 190
Cdd:PRK01156 851 EySLKDSSDI 860
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
134-226 |
5.97e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 37.89 E-value: 5.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499411747 134 RSFSTLSGGEKQRVLLARTLAQQVK---LLILDEPTNHLDIKYQIQILNLVKSLKT---TAVVALHDLNLaAAYCDKLYV 207
Cdd:PRK00635 1695 QNLSSLSLSEKIAIKIAKFLYLPPKhptLFLLDEIATSLDNQQKSALLVQLRTLVSlghSVIYIDHDPAL-LKQADYLIE 1773
|
90 100
....*....|....*....|....*
gi 499411747 208 M------HNGNVVANGEPKDILTSQ 226
Cdd:PRK00635 1774 MgpgsgkTGGKILFSGPPKDISASK 1798
|
|
| |
