|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13897 |
PRK13897 |
type IV secretion system component VirD4; Provisional |
1-596 |
0e+00 |
|
type IV secretion system component VirD4; Provisional
Pssm-ID: 237549 [Multi-domain] Cd Length: 606 Bit Score: 1279.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 1 MHSSSNHIRNILVFFFGMFFLLEFCFYISGALFVLSMWGLEYLDFNALNPSISDFPMRLWPTIFNYIHGWWADPKLYGVS 80
Cdd:PRK13897 2 WHKILNHIRNILGHAIIHFVVLEFCFYISGAFFALFTWGPGALDFNAINPSIADFPWAYWPTIFNYIINVWGQPKIYDYN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 81 NSLKLWLSFAAPLCIVGTVFWNLRHILLEWRPFRKKEALHGDSRWASERDIRKIGLRSRKGLLLGKDQRGYLVADGYQHA 160
Cdd:PRK13897 82 LKLKLLASLLGPAIIVIIFYIKLRERIKSWRPFKKKEKVHGDARWASESDIRKAGLRSKKGMLLGKDKGGYFVADGFQHA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 161 LLFAPTGSGKGVGFVIPNLLFWEDSLVVHDIKLENYDITSGWRKKIGQEVYVWNPAQPDGVSHCYNPLDWISKKPGQMVD 240
Cdd:PRK13897 162 LLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPANPDGISHCYNPLDWVSTKPGQMVD 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 241 DVQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAVVLDTIGKKIHPVAYMNIAAFL 320
Cdd:PRK13897 242 DVQKIANLIMPEQDFWNNEARSLFLGVVLYLLADPEKVKSFGEVVRTMRSDDVVYNLAVVLDTLGKVIHPVAYMNIAAFL 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 321 QKADKERSGVVSTMNSSLELWANPLIDTATASSDFNIQEFKKKKITVYVGLTPDNLTRLRPLMQVFYQQATEFLCRALPS 400
Cdd:PRK13897 322 QKADKERSGVISTMNSSLELWANPLIDTATASSDFNIQEFKKKKTTVYVGLTPDNLTRLQPLMQVFYQQATEFLCRKLPD 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 401 DDEPYGVLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLI 480
Cdd:PRK13897 402 KDEPYGVLFLMDEFPTLGKMEQFKTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLI 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 481 SQLIGNKTVSQESLNRPKFLDLNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYPIKSKKIKYYEDKFFTKKLL 560
Cdd:PRK13897 482 SQLVGNKTVEQESLNKPKFLDLNPASRSLHISEVQRALLLPQEVIMLPRDEQILLIESTYPIKSKKIKYYEDKFFTSRLL 561
|
570 580 590
....*....|....*....|....*....|....*.
gi 499427211 561 KSTFVPTQEPYDPDAARGGVDTVAEDVPTSEEGEQQ 596
Cdd:PRK13897 562 PPTFVPTQEPYDPRANNNEASEETETITVPENNEED 597
|
|
| T4SS-DNA_transf |
pfam02534 |
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and ... |
124-568 |
8.77e-179 |
|
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.
Pssm-ID: 367119 [Multi-domain] Cd Length: 468 Bit Score: 521.58 E-value: 8.77e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 124 RWASERDIRKIGLRSRKGLLLGK---------DQRGYLVADG-YQHALLFAPTGSGKGVGFVIPNLLFWEDSLVVHDIKL 193
Cdd:pfam02534 1 RWANDGDLESAGLLTRENTIIGDvytkdpdawYAGGLLNTDGdFSHVLVFAGTGSGKGVGVVIPNLLVWKGSIVVLDPKG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 194 ENYDITSGWRKKIGQEVYVWNPAQPDGvSHCYNPLDWISKKPGQMVDDVQKIANLIMPE-----QDFWYNEARSLFVGVV 268
Cdd:pfam02534 81 ELWELTSGIREKQGRKVFVLEPFNPKT-SDRYNPLDYIDRGSEQETEDILKVASLIMPGkgggrDDFFNNTARQLLVALI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 269 LYLLAVPEKVK--SFGEVVRTMRSDDV---VYNLAVVLDTIGKKIHPVAYMNIAAFLQKADKERSGVVSTMNSSLELWAN 343
Cdd:pfam02534 160 ALVLRSKPTRTigQTLRFVRNMLSEPNlieNKELAVLLNELDGSHHDRVGDNLRFYVNKTDETRSSVIGTAVSELALYAD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 344 PLIDTATASSDFNIQEFKKKKITVYVGLTPDNLTRLRPLMQVFYQQATEFLCRALPSDDE-PYGVLFMMDEFPTLGKMEQ 422
Cdd:pfam02534 240 PEVRNATSGSDFDLRDLRRDKTSVYVILNPKDLTVVSPLLRVFFQMVVELLYLKLPNGDGrPKEVLFLLDEFPSLGKLEI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 423 FQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNI-ETANLISQLIGNKTVSQESLNRPKflD 501
Cdd:pfam02534 320 LEEALATIRGYGIRLTTICQSISQLKETYGGEGAKSILSNHAVVICFAASNDeETAKYISKLLGKTTVEVESSSKST--D 397
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499427211 502 LNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYPIKSKKIKYYEDKFFTKKLLKSTFVPTQ 568
Cdd:pfam02534 398 AKGSSRSRSISEVQRPLLTPDEVLRMPDDEQIVITKGQPPIKCKKALYFKDEDFKAELNKPTALTAS 464
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
159-553 |
7.91e-131 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 395.51 E-value: 7.91e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 159 HALLFAPTGSGKGVGFVIPNL--LFWEDSLVVHDIKLENYDITSGWRKKIGQEVYVWNPAQPDGvSHCYNPLDWISKKpg 236
Cdd:COG3505 1 HVLVIGPTGSGKTVGLVIPNLtqLARGESVVVTDPKGDLAELTAGFRRRAGYDVYVFDPFDPER-SHRWNPLDEIRDP-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 237 qmvDDVQKIANLIMP-------EQDFWYNEARSLFVGVVLYLLAvpEKVKSFGEVVRTMRSDDVvyNLAVVLDTIGKKIH 309
Cdd:COG3505 78 ---ADAQELAEALIPalgggggGDPFWREAARALLAALILALAE--EGRRTLADVYRLLSEPEE--ELRELLEALPESPH 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 310 PVAYMNIAAFLQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNIQEFKKKKITVYVGLTPDNLTRLRPLMQVFYQQ 389
Cdd:COG3505 151 PPVADTLAAFLNAAEKTRSSVLSTLASALELLSDPEVAALTSGSDFDLRDLIREKGTLYLVLPPDDLSTLAPLLRLLLSQ 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 390 ATEFLCRALP-SDDEPYGVLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRIT 468
Cdd:COG3505 231 LIRALLRRAErSGRLPRPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAETILGNCGTKIF 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 469 FAANNIETANLISQLIGNKTVSQESLNRpkfldlNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYPIKSKKIK 548
Cdd:COG3505 311 LGVNDPETAEYLSELLGKRTVERRSESR------SRGSRSRSRSEQERPLLTPDELRRLPDGEAIVLVRGGPPIRAKKIR 384
|
....*
gi 499427211 549 YYEDK 553
Cdd:COG3505 385 YYKDP 389
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
366-471 |
6.73e-17 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 78.03 E-value: 6.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 366 TVYVGLTPDNLTRlRPLMQVFYQQATEFLCR--ALPSDDEPYGVLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQD 443
Cdd:cd01127 38 ELFLVIPDRDDSF-AALRALFFNQLFRALTElaSLSPGRLPRRVWFILDEFANLGRIPNLPNLLATGRKRGISVVLILQS 116
|
90 100
....*....|....*....|....*...
gi 499427211 444 TEQLKGIYEEAGMNSFLSNSTYRITFAA 471
Cdd:cd01127 117 LAQLEAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
573-794 |
1.41e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 67.30 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 573 PDAARGGVDTV-----AEDVPTsEEGEQQAAIAHEESAQEAQQPQEQ----HGDEAGYDEFGDypqdydySSEDDEYMEG 643
Cdd:PHA03169 31 EQAGRRRGTAAraakpAPPAPT-TSGPQVRAVAEQGHRQTESDTETAeesrHGEKEERGQGGP-------SGSGSESVGS 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 644 LDDIEGEDVPLNGEGLDDIGDEDSYPEDHVSDEGHPEE--DELSAYKEEPTDSElQDAEDGYGGGDEEPYYEENDGGEPY 721
Cdd:PHA03169 103 PTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPpsHPGPHEPAPPESHN-PSPNQQPSSFLQPSHEDSPEEPEPP 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499427211 722 EADEIRGSEGGVTDVYPEEDEPlayEEEPTDGELQDAEDEygsGDEEPyyEESGGDEPYGEDETYDDEDTQPP 794
Cdd:PHA03169 182 TSEPEPDSPGPPQSETPTSSPP---PQSPPDEPGEPQSPT---PQQAP--SPNTQQAVEHEDEPTEPEREGPP 246
|
|
| TFIIF_alpha |
pfam05793 |
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation ... |
660-803 |
4.01e-07 |
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II.
Pssm-ID: 310411 [Multi-domain] Cd Length: 528 Bit Score: 53.41 E-value: 4.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 660 DDIGDEDSypEDHVSDEGHPEEDE-LSAYKEEP---TDSELQDAEDGYGGGDEEPYYEENDGGEPYEADEIRGSEGGVTD 735
Cdd:pfam05793 216 DLEGDDED--DGDESDKGGEDGDEeKKKKKKKKlakNKKKLDDDKKKKRGGDDDAFEYDSDDGDDEGREEDYISDSSASG 293
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499427211 736 VYPEEDEPLAYEEEPTDGELQDAEDEYGSGDEEPyyeESGGDEPYGEDETYDDEDtqppRRDGKQRDD 803
Cdd:pfam05793 294 NDPEEREDKLSPEEPAKGEIEQSDDSEESEEEKN---EEEGKLSKKGKKAKKLKG----KKNGKDKSE 354
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
578-805 |
2.08e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 51.53 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 578 GGVDTVAE-----DVPTSEEGEQqaaiaheESAQEAQQPQEQHGDEAGYDEFGDYPQDYDYSSEDDEymEGLDDIEGEDV 652
Cdd:TIGR00927 671 GETETKGEnesegEIPAERKGEQ-------EGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEG--EIETGEEGEEV 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 653 PLNGEGLDDIGDEDSYPEDHvsDEGHPEEDELSAYKEEPTDSELQDAEDGYGGGDEEPYYEENDGGEPYEADEIRGSEGG 732
Cdd:TIGR00927 742 EDEGEGEAEGKHEVETEGDR--KETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQS 819
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499427211 733 VTDVYPEEDEPLAYEEEpTDGELQD--AEDEYGSGDEEpyyEESGGDEPYGEDETYDDEDTQPPRRDGKQRDDDN 805
Cdd:TIGR00927 820 ETQADDTEVKDETGEQE-LNAENQGeaKQDEKGVDGGG---GSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEEN 890
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13897 |
PRK13897 |
type IV secretion system component VirD4; Provisional |
1-596 |
0e+00 |
|
type IV secretion system component VirD4; Provisional
Pssm-ID: 237549 [Multi-domain] Cd Length: 606 Bit Score: 1279.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 1 MHSSSNHIRNILVFFFGMFFLLEFCFYISGALFVLSMWGLEYLDFNALNPSISDFPMRLWPTIFNYIHGWWADPKLYGVS 80
Cdd:PRK13897 2 WHKILNHIRNILGHAIIHFVVLEFCFYISGAFFALFTWGPGALDFNAINPSIADFPWAYWPTIFNYIINVWGQPKIYDYN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 81 NSLKLWLSFAAPLCIVGTVFWNLRHILLEWRPFRKKEALHGDSRWASERDIRKIGLRSRKGLLLGKDQRGYLVADGYQHA 160
Cdd:PRK13897 82 LKLKLLASLLGPAIIVIIFYIKLRERIKSWRPFKKKEKVHGDARWASESDIRKAGLRSKKGMLLGKDKGGYFVADGFQHA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 161 LLFAPTGSGKGVGFVIPNLLFWEDSLVVHDIKLENYDITSGWRKKIGQEVYVWNPAQPDGVSHCYNPLDWISKKPGQMVD 240
Cdd:PRK13897 162 LLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPANPDGISHCYNPLDWVSTKPGQMVD 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 241 DVQKIANLIMPEQDFWYNEARSLFVGVVLYLLAVPEKVKSFGEVVRTMRSDDVVYNLAVVLDTIGKKIHPVAYMNIAAFL 320
Cdd:PRK13897 242 DVQKIANLIMPEQDFWNNEARSLFLGVVLYLLADPEKVKSFGEVVRTMRSDDVVYNLAVVLDTLGKVIHPVAYMNIAAFL 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 321 QKADKERSGVVSTMNSSLELWANPLIDTATASSDFNIQEFKKKKITVYVGLTPDNLTRLRPLMQVFYQQATEFLCRALPS 400
Cdd:PRK13897 322 QKADKERSGVISTMNSSLELWANPLIDTATASSDFNIQEFKKKKTTVYVGLTPDNLTRLQPLMQVFYQQATEFLCRKLPD 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 401 DDEPYGVLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLI 480
Cdd:PRK13897 402 KDEPYGVLFLMDEFPTLGKMEQFKTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLI 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 481 SQLIGNKTVSQESLNRPKFLDLNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYPIKSKKIKYYEDKFFTKKLL 560
Cdd:PRK13897 482 SQLVGNKTVEQESLNKPKFLDLNPASRSLHISEVQRALLLPQEVIMLPRDEQILLIESTYPIKSKKIKYYEDKFFTSRLL 561
|
570 580 590
....*....|....*....|....*....|....*.
gi 499427211 561 KSTFVPTQEPYDPDAARGGVDTVAEDVPTSEEGEQQ 596
Cdd:PRK13897 562 PPTFVPTQEPYDPRANNNEASEETETITVPENNEED 597
|
|
| T4SS-DNA_transf |
pfam02534 |
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and ... |
124-568 |
8.77e-179 |
|
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.
Pssm-ID: 367119 [Multi-domain] Cd Length: 468 Bit Score: 521.58 E-value: 8.77e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 124 RWASERDIRKIGLRSRKGLLLGK---------DQRGYLVADG-YQHALLFAPTGSGKGVGFVIPNLLFWEDSLVVHDIKL 193
Cdd:pfam02534 1 RWANDGDLESAGLLTRENTIIGDvytkdpdawYAGGLLNTDGdFSHVLVFAGTGSGKGVGVVIPNLLVWKGSIVVLDPKG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 194 ENYDITSGWRKKIGQEVYVWNPAQPDGvSHCYNPLDWISKKPGQMVDDVQKIANLIMPE-----QDFWYNEARSLFVGVV 268
Cdd:pfam02534 81 ELWELTSGIREKQGRKVFVLEPFNPKT-SDRYNPLDYIDRGSEQETEDILKVASLIMPGkgggrDDFFNNTARQLLVALI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 269 LYLLAVPEKVK--SFGEVVRTMRSDDV---VYNLAVVLDTIGKKIHPVAYMNIAAFLQKADKERSGVVSTMNSSLELWAN 343
Cdd:pfam02534 160 ALVLRSKPTRTigQTLRFVRNMLSEPNlieNKELAVLLNELDGSHHDRVGDNLRFYVNKTDETRSSVIGTAVSELALYAD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 344 PLIDTATASSDFNIQEFKKKKITVYVGLTPDNLTRLRPLMQVFYQQATEFLCRALPSDDE-PYGVLFMMDEFPTLGKMEQ 422
Cdd:pfam02534 240 PEVRNATSGSDFDLRDLRRDKTSVYVILNPKDLTVVSPLLRVFFQMVVELLYLKLPNGDGrPKEVLFLLDEFPSLGKLEI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 423 FQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNI-ETANLISQLIGNKTVSQESLNRPKflD 501
Cdd:pfam02534 320 LEEALATIRGYGIRLTTICQSISQLKETYGGEGAKSILSNHAVVICFAASNDeETAKYISKLLGKTTVEVESSSKST--D 397
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 499427211 502 LNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYPIKSKKIKYYEDKFFTKKLLKSTFVPTQ 568
Cdd:pfam02534 398 AKGSSRSRSISEVQRPLLTPDEVLRMPDDEQIVITKGQPPIKCKKALYFKDEDFKAELNKPTALTAS 464
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
159-553 |
7.91e-131 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 395.51 E-value: 7.91e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 159 HALLFAPTGSGKGVGFVIPNL--LFWEDSLVVHDIKLENYDITSGWRKKIGQEVYVWNPAQPDGvSHCYNPLDWISKKpg 236
Cdd:COG3505 1 HVLVIGPTGSGKTVGLVIPNLtqLARGESVVVTDPKGDLAELTAGFRRRAGYDVYVFDPFDPER-SHRWNPLDEIRDP-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 237 qmvDDVQKIANLIMP-------EQDFWYNEARSLFVGVVLYLLAvpEKVKSFGEVVRTMRSDDVvyNLAVVLDTIGKKIH 309
Cdd:COG3505 78 ---ADAQELAEALIPalgggggGDPFWREAARALLAALILALAE--EGRRTLADVYRLLSEPEE--ELRELLEALPESPH 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 310 PVAYMNIAAFLQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNIQEFKKKKITVYVGLTPDNLTRLRPLMQVFYQQ 389
Cdd:COG3505 151 PPVADTLAAFLNAAEKTRSSVLSTLASALELLSDPEVAALTSGSDFDLRDLIREKGTLYLVLPPDDLSTLAPLLRLLLSQ 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 390 ATEFLCRALP-SDDEPYGVLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRIT 468
Cdd:COG3505 231 LIRALLRRAErSGRLPRPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAETILGNCGTKIF 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 469 FAANNIETANLISQLIGNKTVSQESLNRpkfldlNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYPIKSKKIK 548
Cdd:COG3505 311 LGVNDPETAEYLSELLGKRTVERRSESR------SRGSRSRSRSEQERPLLTPDELRRLPDGEAIVLVRGGPPIRAKKIR 384
|
....*
gi 499427211 549 YYEDK 553
Cdd:COG3505 385 YYKDP 389
|
|
| PRK13850 |
PRK13850 |
type IV secretion system protein VirD4; Provisional |
85-594 |
5.45e-88 |
|
type IV secretion system protein VirD4; Provisional
Pssm-ID: 237531 [Multi-domain] Cd Length: 670 Bit Score: 292.16 E-value: 5.45e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 85 LWLSFAAPL---CIVGTVFWNLRHILLEWRPFRKKEALHGDSRWASERDIRKIGLRSR----KGLLLGK----DQRGYLV 153
Cdd:PRK13850 55 LYLGYATPVfyrGLAIVVSTSVVVLLSQLIVSLRNREHHGTARWAEEGEMRHAGYLQRysriTGPIFGKtcgpRWFGSYL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 154 ADGYQ-HALLFAPTGSGKGVGFVIPNLLFWEDSLVVHDIKLENYDITSGWRKKIGQEVYVWNPAQPDGVSHCYNPLDWIS 232
Cdd:PRK13850 135 TNGEQpHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFAPLDPERRTHCYNPVLDIA 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 233 KKPG--QMVDDVQKIANLIMPE---QDFWYNEARSLFVGVVLYllAVPEKVKSFGevvrtmrsddVVYNLavvLDTIGKK 307
Cdd:PRK13850 215 ALPPerRFTETRRLAANLITAKgkgAEGFIDGARDLFVAGILA--CIERGTPTIG----------AVYDL---FAQPGEK 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 308 ihpvaYMNIAAFLQKA-DKERSGVVSTMNSS----------------LELWANPLIDTATASSDFNIQEFKKKKITVYVG 370
Cdd:PRK13850 280 -----YKLFAQLAEETqNKEAQRIFDNMAGNdtkiltsytsvlgdggLNLWADPLVKAATSRSDFSVYDLRRKRTCIYLC 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 371 LTPDNLTRLRPLMQVFYQQATEFLCRALPSDDEPYGVLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGI 450
Cdd:PRK13850 355 VSPNDLEVVAPLMRLLFQQVVSILQRSLPGKDERHEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALTGT 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 451 YEEAGMNSFLSNSTYRITFAANNIETANLISQLIGNKT--VSQESLNRPKFLDLNpasrsLHISDTQRALLLPQEVIMLP 528
Cdd:PRK13850 435 YDEAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTfkARSTSYSQARMFDHN-----IQISDQGAPLLRPEQVRLLD 509
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499427211 529 KDEQILLIESTYPIKSKKIKYYEDKFFtKKLLKSTFVPTQEPY------DPDAARGGVDTVAEDVPTSEEGE 594
Cdd:PRK13850 510 DDTEIVLIKGQPPLKLRKVRYYSDREL-KRIFEAQTGSLPEPAslmlpdDTNARRKHLPQPAASSTDQAPAK 580
|
|
| PRK13876 |
PRK13876 |
conjugal transfer coupling protein TraG; Provisional |
110-577 |
1.25e-83 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237538 Cd Length: 663 Bit Score: 280.27 E-value: 1.25e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 110 WRP-FRKKEALHGDSRWASERDIRKIGLRSRKGLLLGKDQRGYLVADGYQHALLFAPTGSGKGVGFVIPNLLFWEDSLVV 188
Cdd:PRK13876 96 WRArEAKRVTTYGSARWAERREIRAAGLLGPDGVVLGRHDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPTLLTWPGSAIV 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 189 HDIKLENYDITSGWRKKIGQeVYVWNPAQPDgvSHCYNPLDWISKKPGQmVDDVQKIAN-LIMPE-----QDFWYNEARS 262
Cdd:PRK13876 176 HDIKGENWQLTAGFRARFGR-VLLFDPTNAK--SAAYNPLLEVRRGEWE-VRDVQNIADiLVDPEgslerRNHWEKTSHA 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 263 LFVGVVLYLL-AVPEK----VKSFgevvrtmRSD---DVVYNLAVVLDT---IGKKIHPVaymnIAA----FLQKADKER 327
Cdd:PRK13876 252 LLVGAILHVLyAEEDKtlagVANF-------LSDpkrPIEATLRAMMTTphlGEAGPHPV----VASaareLLNKSDNER 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 328 SGVVSTMNSSLELWANPLIDTATASSDFNIQEF--KKKKITVYVGLTPDNLTRLRPLMQVFYQQATEFLCRALPSDDEPY 405
Cdd:PRK13876 321 SGVLSTAMSFLGLYRDPVVAEVTSRCDWRIADLvaGERPVSLYLVVPPSDISRTKPLIRLILNQIGRRLTEDLDGKARRH 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 406 GVLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAgmNSFLSNSTYRITFAANNIETANLISQLIG 485
Cdd:PRK13876 401 RLLLMLDEFPALGRLDFFESALAFMAGYGIKSFLIAQSLNQIEKAYGQN--NSILDNCHVRVSFATNDERTAKRVSDALG 478
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 486 NKTVSQESLN----RpkfldLNP------ASRslhiSDTQRALLLPQEVIMLPKDEQILLIESTYPIKSKKIKYYEDKFF 555
Cdd:PRK13876 479 TATELRAMKNyaghR-----LSPwlghlmVSR----QETARPLLTPGEVMQLPPDDEIVMVSGVPPIRAKKARYYEDARF 549
|
490 500
....*....|....*....|..
gi 499427211 556 TKKLLKStfvPTQEPYDPDAAR 577
Cdd:PRK13876 550 KERVLPP---PDLAPPAGPPAR 568
|
|
| PRK13880 |
PRK13880 |
conjugal transfer coupling protein TraG; Provisional |
114-558 |
9.91e-72 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237540 Cd Length: 636 Bit Score: 247.35 E-value: 9.91e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 114 RKKEALHGDSRWASERDIRKIGLRSRKGLLLGK------------------DQRG---YLVADGYQHALLFAPTGSGKGV 172
Cdd:PRK13880 111 KANEYLHGSARWAEKKDIQAAGLLPRERNVLEIvtgkaaptatgvyvggwqDKDGnfhYLRHNGPEHVLTYAPTRSGKGV 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 173 GFVIPNLLFWEDSLVVHDIKLENYDITSGWRKK-IGQEVYVWNPAQPDGvSHCYNPLDWISKKPGQMVDDVQKIANLIM- 250
Cdd:PRK13880 191 GLVVPTLLSWGHSSVITDLKGELWALTAGWRQKhAKNKVLRFEPASLSG-SVCWNPLDEIRLGTEYEVGDVQNLATLIVd 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 251 PE----QDFWYNEARSLFVGVVLYLLAvpeKVKSFGEV-----VRTMRSDD--VVYNLAVVLDTIGK---KIHPVAYMNI 316
Cdd:PRK13880 270 PDgkglESHWQKTAFALLVGVILHALY---KAKNEGGTatlpsVDAMLADPnrDIGELWMEMTTYGHvdgQNHPAIGSAA 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 317 AAFLQKADKERSGVVSTMNSSLELWANPLIDTATASSDFNIQEF--KKKKITVYVGLTPDNLTRLRPLMQVFYQQATEFL 394
Cdd:PRK13880 347 RDMMDRPEEEAGSVLSTAKSYLALYRDPVVARNVSRSDFRIKDLmhHDDPVSLYIVTQPNDKARLRPLVRVMVNMIVRLL 426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 395 C------RALPSDDEPYGVLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMN-SFLSNSTYRI 467
Cdd:PRK13880 427 AdkmdfeNGRPVAHYKHRLLMMLDEFPSLGKLEILQESLAFVAGYGIKCYLICQDINQLKSRETGYGHDeSITSNCHVQN 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 468 TFAANNIETANLISQLIGNKTVSQESLN---RPKFLDLNPASRSlhISDTQRALLLPQEVIMLP---KDEQILLIES--- 538
Cdd:PRK13880 507 AYPPNRVETAEHLSKLTGQTTVVKEQITtsgRRTSAMLGQVSRT--YQEVQRPLLTPDECLRMPgpkKDAKGEIEEAgdm 584
|
490 500
....*....|....*....|....*.
gi 499427211 539 -----TYP-IKSKKIKYYEDKFFTKK 558
Cdd:PRK13880 585 vvyvaGYPaIYGKQPLYFKDPVFQAR 610
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
407-529 |
3.44e-29 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 112.74 E-value: 3.44e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 407 VLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLISQLIGN 486
Cdd:pfam12696 2 VLFVLDEFANLGKIPDLEKLISTGRSRGISLMLILQSIAQLEELYGKDGAETILGNCNTKVFLGGGDEETAKYLSKLLGK 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 499427211 487 KTVSQESLNRPK-FLDLNPASRSLHISDTQRALLLPQEVIMLPK 529
Cdd:pfam12696 82 YTVVSTTTSSSSsGSGGSGSSSSSSSQLVGRPLLTPDELRRLPR 125
|
|
| PRK13822 |
PRK13822 |
conjugal transfer coupling protein TraG; Provisional |
111-543 |
5.60e-28 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237522 [Multi-domain] Cd Length: 641 Bit Score: 120.07 E-value: 5.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 111 RPFRKKEALHGDSRWASERDIRK---------IGLRSR-----------------------KGLLLGKDQrgylvaD-GY 157
Cdd:PRK13822 151 RRIRGKRAIHGDADWMKMKEAAKlfppdggivIGERYRvdkdsvaalpfrpddrttwgkggKAPLLTFDG------DfGS 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 158 QHALLFAPTGSGKGVGFVIPNLLFWEDSLVVHDIKLENYDITSGWRKKIGQEVYVWNPAQPDGvshCYNPLDWISKKPGQ 237
Cdd:PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPTNPGT---GFNVLDWIGRSGGT 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 238 MVDDVQKIANLIMPEQ--------DFWYNEARSLFVGVVLYLLAVPEkvksFGEVVRTMRS---------DDVVYNLAVV 300
Cdd:PRK13822 302 KEEDIVAVASWILSDSkrtessrdDFFRNSAHQLLTALLAHVCLSGE----YEGKERTLRTlrailsepePSLRARLRDI 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 301 LDTIGKkihPVAYMNIAAFLQKADKERSGVVSTMNS-----SLELWANpLIdtatASSDFNIQEFKKKKITVYVGLtPDN 375
Cdd:PRK13822 378 YENSES---DFIRENVGVFVNMTEQTFSGVYATASKdtqwlSYPNYAA-LV----SGNSFSTSDLAAGNTDVFINI-PLK 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 376 LTRLRP---------LMQVFYQQATEFLCRalpsddepygVLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQ 446
Cdd:PRK13822 449 ILESYPglarviigsLLNAMYNADGNVKGR----------ALFLLDEVARLGYMRILETARDAGRKYGITLMLIYQSIGQ 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 447 LKGIYEEAGMNSFLsNSTYRITFAA-NNIETANLISQLIGNKTVSQESLNRPKFLDLNPASRSLHISdtQRALLLPQEVI 525
Cdd:PRK13822 519 LREHFGGRGATSWF-ESASWISFAAiKDLDTADYISERCGEMTVEVDQTSRSSGWSGSSRSRSKQLQ--RRPLIMPHEIL 595
|
490
....*....|....*....
gi 499427211 526 -MLPKDEQILLIESTYPIK 543
Cdd:PRK13822 596 qSMRADEQIIFVQGNPPLR 614
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
158-542 |
2.16e-21 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 96.98 E-value: 2.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 158 QHALLFAPTGSGKGVGF--VIPNLLFWEDSLVVhdiklenYDITSGWRKKIGQEVY--VWNPAqpDGVSHCYNPLDWISK 233
Cdd:pfam10412 16 RHTLIIGTTGSGKTQALrgLLDQARARGDRAII-------FDLTGAFTERFYDPGRdiLLNPL--DARSPAWSPFAECKT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 234 KpgqmvDDVQKIANLIMPEQ-----DFWYNEARSLFVGVVLYLLAvpEKVKSFGEVVRTMRSDDVvYNLAVVL-DTIGKK 307
Cdd:pfam10412 87 P-----ADFAAIAAALIPEDgggsdPFWALAARTVLVDTLRALQR--TGRKTNAALLRALLTADL-DELHELLaGTAAAP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 308 IhpvaymniaaFLQKADKERSGVVSTMNSSLELwanpLIDTATASSDFNIQEFKKKKI---TVYVGLTPDNLTRLRPLMQ 384
Cdd:pfam10412 159 L----------TAPEAERTTASIRATLATNLRA----LRFLAPDGERFSIREWITEEDpggWLFITYRADQRAALRPLLS 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 385 VFYQQATEFLcRALPSDDEPYgVLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNST 464
Cdd:pfam10412 225 CWLDLAIRAL-LSLPPSRDRR-LWFFLDELPALGRLPSLKDLLAEGRKFGGAVVLGLQSIAQLREIYGEDGAQTILSNCG 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499427211 465 YRITFAANNIETANLISQLIGNKTVSQESLNRPKFLDLNPASRSLHISDTQRALLLPQEVIMLPKDEQILLIESTYPI 542
Cdd:pfam10412 303 TKLILRVSDGETAELCSDLLGDREVERMDESLSYGANNSRDGVTLGRQRRVRPLVLPSEIMNLPRLHGYLKFPDGFPV 380
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
366-471 |
6.73e-17 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 78.03 E-value: 6.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 366 TVYVGLTPDNLTRlRPLMQVFYQQATEFLCR--ALPSDDEPYGVLFMMDEFPTLGKMEQFQTGIAYFRGYRVRLFLIIQD 443
Cdd:cd01127 38 ELFLVIPDRDDSF-AALRALFFNQLFRALTElaSLSPGRLPRRVWFILDEFANLGRIPNLPNLLATGRKRGISVVLILQS 116
|
90 100
....*....|....*....|....*...
gi 499427211 444 TEQLKGIYEEAGMNSFLSNSTYRITFAA 471
Cdd:cd01127 117 LAQLEAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
573-794 |
1.41e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 67.30 E-value: 1.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 573 PDAARGGVDTV-----AEDVPTsEEGEQQAAIAHEESAQEAQQPQEQ----HGDEAGYDEFGDypqdydySSEDDEYMEG 643
Cdd:PHA03169 31 EQAGRRRGTAAraakpAPPAPT-TSGPQVRAVAEQGHRQTESDTETAeesrHGEKEERGQGGP-------SGSGSESVGS 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 644 LDDIEGEDVPLNGEGLDDIGDEDSYPEDHVSDEGHPEE--DELSAYKEEPTDSElQDAEDGYGGGDEEPYYEENDGGEPY 721
Cdd:PHA03169 103 PTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPpsHPGPHEPAPPESHN-PSPNQQPSSFLQPSHEDSPEEPEPP 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499427211 722 EADEIRGSEGGVTDVYPEEDEPlayEEEPTDGELQDAEDEygsGDEEPyyEESGGDEPYGEDETYDDEDTQPP 794
Cdd:PHA03169 182 TSEPEPDSPGPPQSETPTSSPP---PQSPPDEPGEPQSPT---PQQAP--SPNTQQAVEHEDEPTEPEREGPP 246
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
561-781 |
3.58e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 59.60 E-value: 3.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 561 KSTFVPTQEPYDPDAARGG--VDTVAEDVPTSEEGEQQAAiahEESAQEAQQPQEQHGDEAGYDEFGDYPQDYDYSSEDD 638
Cdd:PHA03169 37 RGTAARAAKPAPPAPTTSGpqVRAVAEQGHRQTESDTETA---EESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 639 EYMEGLDDIEGEDVPLNGEGLDDIGDEDSYPEDHvsDEGHPEEDELSayKEEPTDSELQ-----DAEDGYGGgDEEPyye 713
Cdd:PHA03169 114 LASGLSPENTSGSSPESPASHSPPPSPPSHPGPH--EPAPPESHNPS--PNQQPSSFLQpshedSPEEPEPP-TSEP--- 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499427211 714 ENDGGEPYEADEirGSEGGVTDVYPEEDEPLAyEEEPTDGELQDAEDEyGSGDEEPYYEESGGDEPYG 781
Cdd:PHA03169 186 EPDSPGPPQSET--PTSSPPPQSPPDEPGEPQ-SPTPQQAPSPNTQQA-VEHEDEPTEPEREGPPFPG 249
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
673-803 |
6.26e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 55.75 E-value: 6.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 673 VSDEGHPEEDELSAYKEEPTDSELQDAEDGYGGGDEEPYYEENDGGE----PYEADEIR-GSEGGVTDVYPEEDEPlAYE 747
Cdd:PHA03169 61 VAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPsgsaEELASGLSpENTSGSSPESPASHSP-PPS 139
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 499427211 748 EEPTDGELQDAEDEYGSGDEEPyyEESGGDEPYGEDEtydDEDTQPPrrDGKQRDD 803
Cdd:PHA03169 140 PPSHPGPHEPAPPESHNPSPNQ--QPSSFLQPSHEDS---PEEPEPP--TSEPEPD 188
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
657-803 |
2.49e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 53.82 E-value: 2.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 657 EGLDDIGDEDS-YPEDHVSDEGHPE-EDELSAYKEEPTDSElqDAEDGYGGGDEEPYYEENDGGEP-YEADEIRGSEGGV 733
Cdd:PHA03169 69 TESDTETAEESrHGEKEERGQGGPSgSGSESVGSPTPSPSG--SAEELASGLSPENTSGSSPESPAsHSPPPSPPSHPGP 146
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499427211 734 TDVYPEEDEPLAYEEEPTDGELQDAEDeygsGDEEP-----YYEESGGDEPYGEDETYDDEDTQPPRRDGKQRDD 803
Cdd:PHA03169 147 HEPAPPESHNPSPNQQPSSFLQPSHED----SPEEPepptsEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSP 217
|
|
| TFIIF_alpha |
pfam05793 |
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation ... |
660-803 |
4.01e-07 |
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II.
Pssm-ID: 310411 [Multi-domain] Cd Length: 528 Bit Score: 53.41 E-value: 4.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 660 DDIGDEDSypEDHVSDEGHPEEDE-LSAYKEEP---TDSELQDAEDGYGGGDEEPYYEENDGGEPYEADEIRGSEGGVTD 735
Cdd:pfam05793 216 DLEGDDED--DGDESDKGGEDGDEeKKKKKKKKlakNKKKLDDDKKKKRGGDDDAFEYDSDDGDDEGREEDYISDSSASG 293
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499427211 736 VYPEEDEPLAYEEEPTDGELQDAEDEYGSGDEEPyyeESGGDEPYGEDETYDDEDtqppRRDGKQRDD 803
Cdd:pfam05793 294 NDPEEREDKLSPEEPAKGEIEQSDDSEESEEEKN---EEEGKLSKKGKKAKKLKG----KKNGKDKSE 354
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
578-805 |
2.08e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 51.53 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 578 GGVDTVAE-----DVPTSEEGEQqaaiaheESAQEAQQPQEQHGDEAGYDEFGDYPQDYDYSSEDDEymEGLDDIEGEDV 652
Cdd:TIGR00927 671 GETETKGEnesegEIPAERKGEQ-------EGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEG--EIETGEEGEEV 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 653 PLNGEGLDDIGDEDSYPEDHvsDEGHPEEDELSAYKEEPTDSELQDAEDGYGGGDEEPYYEENDGGEPYEADEIRGSEGG 732
Cdd:TIGR00927 742 EDEGEGEAEGKHEVETEGDR--KETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQS 819
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 499427211 733 VTDVYPEEDEPLAYEEEpTDGELQD--AEDEYGSGDEEpyyEESGGDEPYGEDETYDDEDTQPPRRDGKQRDDDN 805
Cdd:TIGR00927 820 ETQADDTEVKDETGEQE-LNAENQGeaKQDEKGVDGGG---GSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEEN 890
|
|
| PTZ00415 |
PTZ00415 |
transmission-blocking target antigen s230; Provisional |
661-762 |
2.17e-04 |
|
transmission-blocking target antigen s230; Provisional
Pssm-ID: 185603 [Multi-domain] Cd Length: 2849 Bit Score: 45.04 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 661 DIGDEDSYPEDHVSDEGHPEEDELSAYKEEPTDSELQDAEDGYGGGDEEpyyEENDGGE--PYEADEIRGS------EGG 732
Cdd:PTZ00415 139 HLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDED---EEDEGGEdfTYEKSEVDKTdcfkfiEAG 215
|
90 100 110
....*....|....*....|....*....|.
gi 499427211 733 VTD-VYPEEDEPLAYEEEPTDGELQDAEDEY 762
Cdd:PTZ00415 216 AGDdVFDKIDEAFETTEKGDGAVLQASDDEV 246
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
632-804 |
1.81e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 41.90 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 632 DYSSEDDEYMEGLDDIEGEDV--PLNGEG-LDDIGDEDSYPEDHVSDEGHPE-EDELSAYKEEPTDSELQ-DAEDGYGGG 706
Cdd:TIGR00927 629 DLSKGDVAEAEHTGERTGEEGerPTEAEGeNGEESGGEAEQEGETETKGENEsEGEIPAERKGEQEGEGEiEAKEADHKG 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 707 DEEPYYEENDGGEPYEADEIRGSEGGVTDVYPEEDEPlayeeeptDGELQDAEDEYGSGDEEpyyEESGGDEPYGEDETY 786
Cdd:TIGR00927 709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEG--------EGEAEGKHEVETEGDRK---ETEHEGETEAEGKED 777
|
170
....*....|....*...
gi 499427211 787 DDEDTQPPRRDGKQRDDD 804
Cdd:TIGR00927 778 EDEGEIQAGEDGEMKGDE 795
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
572-769 |
2.69e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 41.52 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 572 DPDAARGGVDTVAEDVPTSEEGEQQAAIAHEEsaQEAQQPQEQHGDEAGYDEfGDYPQDYDYSSEDDEYMEGLDDIE--- 648
Cdd:TIGR00927 709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGEE--VEDEGEGEAEGKHEVETE-GDRKETEHEGETEAEGKEDEDEGEiqa 785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 649 GEDVPLNGEglddigDEDSYPEDHVSDEGHPEEDELSAYKEEPTDSELQDAEDGYGGGDEEPYYEENDGGEPYEADEirG 728
Cdd:TIGR00927 786 GEDGEMKGD------EGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGG--G 857
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 499427211 729 SEGGvtDVYPEEDEplAYEEEPTDGELQDAEDEYgSGDEEP 769
Cdd:TIGR00927 858 SDGG--DSEEEEEE--EEEEEEEEEEEEEEEEEE-EENEEP 893
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
536-701 |
9.71e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 39.21 E-value: 9.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 536 IESTYPIKSKKIKYYEDKFFTKKLLKSTFVPTQEPYDPDAARGGVDTVAEDVPTSEEGEQQAAIAHEESAQEAQQPQEQH 615
Cdd:PRK05901 35 KEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDK 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499427211 616 GDEAGYDEFGDYPQDYDysseDDEYMEGLDDIEGEDVPLNGEGLDDIGDEDSYPEDHVSDEGHPEEDELSAYKEEPTDSE 695
Cdd:PRK05901 115 DDDLNYVKDIDVLNQAD----DDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWD 190
|
....*.
gi 499427211 696 LQDAED 701
Cdd:PRK05901 191 EDDSEA 196
|
|
| |
