NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|499473716|ref|WP_011160356|]
View 

EthD domain-containing protein [Rhodopseudomonas palustris]

Protein Classification

EthD domain-containing protein( domain architecture ID 10537294)

EthD domain-containing protein similar to Metarhizium robertsii conidial pigment biosynthesis dehydratase EthD, which is part of the Pks1 gene cluster that mediates the biosynthesis of an anthraquinone derivative pigment that contributes to conidial pigmentation

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
EthD pfam07110
EthD domain; This family consists of several bacterial sequences which are related to the EthD ...
 12-109 4.56e-21

EthD domain; This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber. In Rhodococcus ruber, EthD is thought to be involved in the degradation of ethyl tert-butyl ether (ETBE). EthD synthesis is induced by ETBE but it's exact function is unknown, it is however thought to be essential to the ETBE degradation system.


:

Pssm-ID: 429298  Cd Length: 96  Bit Score: 80.59  E-value: 4.56e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499473716   12 PELSRDQFDSHWRDRHGPLVRSHQQVLRIRRYVQTVPLPDPAQQSIRASRGLAAADYDGCGELWWDSFDDHTSARATPEG 91
Cdd:pfam07110   2 PGLSPEEFRDYWEEVHAPLAKPLLGKHGILRYHPQTKRRPGVEAGLALAGPGGDPDYDGVAELWFDDLEDFVAAFADPEY 81

                          90
                  ....*....|....*...
gi 499473716   92 LAALReliADERRFVDLS 109
Cdd:pfam07110  82 AAVIG---PDEANFADPS 96
 
Name Accession Description Interval E-value
EthD pfam07110
EthD domain; This family consists of several bacterial sequences which are related to the EthD ...
 12-109 4.56e-21

EthD domain; This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber. In Rhodococcus ruber, EthD is thought to be involved in the degradation of ethyl tert-butyl ether (ETBE). EthD synthesis is induced by ETBE but it's exact function is unknown, it is however thought to be essential to the ETBE degradation system.


Pssm-ID: 429298  Cd Length: 96  Bit Score: 80.59  E-value: 4.56e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499473716   12 PELSRDQFDSHWRDRHGPLVRSHQQVLRIRRYVQTVPLPDPAQQSIRASRGLAAADYDGCGELWWDSFDDHTSARATPEG 91
Cdd:pfam07110   2 PGLSPEEFRDYWEEVHAPLAKPLLGKHGILRYHPQTKRRPGVEAGLALAGPGGDPDYDGVAELWFDDLEDFVAAFADPEY 81

                          90
                  ....*....|....*...
gi 499473716   92 LAALReliADERRFVDLS 109
Cdd:pfam07110  82 AAVIG---PDEANFADPS 96
TIGR02118 TIGR02118
conserved hypothetical protein; This model represents a small family of proteins of unknown ...
 15-108 2.24e-10

conserved hypothetical protein; This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate. [Hypothetical proteins, Conserved]


Pssm-ID: 131173  Cd Length: 100  Bit Score: 53.54  E-value: 2.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499473716   15 SRDQFDSHWRDRHGPLVrshQQVLRIRRYVQTvplpdpaqqsiRASRGL-AAADYDGCGELWWDSFDDHTSARATPEGLA 93
Cdd:TIGR02118  12 DGAAFDHHYRDTHVPLA---QKLPGLRRYAVD-----------KIVSGLpGSSPYYGMCELYFDSIEDFQAAFDSPEGKA 77

                          90
                  ....*....|....*
gi 499473716   94 ALreliADERRFVDL 108
Cdd:TIGR02118  78 AA----ADVANFADG 88
 
Name Accession Description Interval E-value
EthD pfam07110
EthD domain; This family consists of several bacterial sequences which are related to the EthD ...
 12-109 4.56e-21

EthD domain; This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber. In Rhodococcus ruber, EthD is thought to be involved in the degradation of ethyl tert-butyl ether (ETBE). EthD synthesis is induced by ETBE but it's exact function is unknown, it is however thought to be essential to the ETBE degradation system.


Pssm-ID: 429298  Cd Length: 96  Bit Score: 80.59  E-value: 4.56e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499473716   12 PELSRDQFDSHWRDRHGPLVRSHQQVLRIRRYVQTVPLPDPAQQSIRASRGLAAADYDGCGELWWDSFDDHTSARATPEG 91
Cdd:pfam07110   2 PGLSPEEFRDYWEEVHAPLAKPLLGKHGILRYHPQTKRRPGVEAGLALAGPGGDPDYDGVAELWFDDLEDFVAAFADPEY 81

                          90
                  ....*....|....*...
gi 499473716   92 LAALReliADERRFVDLS 109
Cdd:pfam07110  82 AAVIG---PDEANFADPS 96
TIGR02118 TIGR02118
conserved hypothetical protein; This model represents a small family of proteins of unknown ...
 15-108 2.24e-10

conserved hypothetical protein; This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate. [Hypothetical proteins, Conserved]


Pssm-ID: 131173  Cd Length: 100  Bit Score: 53.54  E-value: 2.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499473716   15 SRDQFDSHWRDRHGPLVrshQQVLRIRRYVQTvplpdpaqqsiRASRGL-AAADYDGCGELWWDSFDDHTSARATPEGLA 93
Cdd:TIGR02118  12 DGAAFDHHYRDTHVPLA---QKLPGLRRYAVD-----------KIVSGLpGSSPYYGMCELYFDSIEDFQAAFDSPEGKA 77

                          90
                  ....*....|....*
gi 499473716   94 ALreliADERRFVDL 108
Cdd:TIGR02118  78 AA----ADVANFADG 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH