NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|501627350|ref|WP_012604678|]
View 

MULTISPECIES: Flp family type IVb pilin [Vibrio]

Protein Classification

Flp family type IVb pilin( domain architecture ID 10008072)

Flp/Fap (fibril-associated protein) family type IVb pilin similar to Aggregatibacter actinomycetemcomitans Flp-1, which is required for non-specific adherence of the bacterium

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Flp COG3847
Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular ...
 9-56 3.57e-08

Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


:

Pssm-ID: 443057  Cd Length: 58  Bit Score: 44.01  E-value: 3.57e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 501627350  9 KEFMKDEEGLTVIEYVIGAALLVLGLTTIFTGFGAALSAKLNNIINSI 56
Cdd:COG3847   6 KRFLKDESGATAIEYGLIAALIAVAIIAAVTTLGTALNGLFTSIATAL 53
 
Name Accession Description Interval E-value
Flp COG3847
Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular ...
 9-56 3.57e-08

Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443057  Cd Length: 58  Bit Score: 44.01  E-value: 3.57e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 501627350  9 KEFMKDEEGLTVIEYVIGAALLVLGLTTIFTGFGAALSAKLNNIINSI 56
Cdd:COG3847   6 KRFLKDESGATAIEYGLIAALIAVAIIAAVTTLGTALNGLFTSIATAL 53
Flp_Fap pfam04964
Flp/Fap pilin component;
11-56 3.99e-04

Flp/Fap pilin component;


Pssm-ID: 398567  Cd Length: 46  Bit Score: 33.73  E-value: 3.99e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 501627350  11 FMKDEEGLTVIEYVIGAALLVLGLTTIFTGFGAALSAKLNNIINSI 56
Cdd:pfam04964  1 FLKDESGATAIEYGLIAALIAVVIIAYVTTLGTALKTAFTSIATAL 46
 
Name Accession Description Interval E-value
Flp COG3847
Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular ...
 9-56 3.57e-08

Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443057  Cd Length: 58  Bit Score: 44.01  E-value: 3.57e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 501627350  9 KEFMKDEEGLTVIEYVIGAALLVLGLTTIFTGFGAALSAKLNNIINSI 56
Cdd:COG3847   6 KRFLKDESGATAIEYGLIAALIAVAIIAAVTTLGTALNGLFTSIATAL 53
Flp_Fap pfam04964
Flp/Fap pilin component;
11-56 3.99e-04

Flp/Fap pilin component;


Pssm-ID: 398567  Cd Length: 46  Bit Score: 33.73  E-value: 3.99e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 501627350  11 FMKDEEGLTVIEYVIGAALLVLGLTTIFTGFGAALSAKLNNIINSI 56
Cdd:pfam04964  1 FLKDESGATAIEYGLIAALIAVVIIAYVTTLGTALKTAFTSIATAL 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH