|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-323 |
7.67e-98 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 292.01 E-value: 7.67e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 12 SLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGAL 91
Cdd:COG1172 6 TTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 92 SAIALNNWGLPWPVVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSlFTFIGRAW 171
Cdd:COG1172 86 AALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDA-FRALGQGS 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 172 VVGIPMPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSN 251
Cdd:COG1172 165 LLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPN 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503995405 252 QGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTRI 323
Cdd:COG1172 245 AGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLR 316
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
58-320 |
1.72e-82 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 250.79 E-value: 1.72e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 58 SAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNNWGLPWPVVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTL 137
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 138 ATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVVGIPMPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGI 217
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 218 NTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLIL 297
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 503995405 298 SHISPFYTQIATGTIILLAIWLN 320
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
27-322 |
1.19e-64 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 206.88 E-value: 1.19e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 27 IALFFVFccVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAiALNNWGLPWPVV 106
Cdd:PRK09512 23 IALLVLI--AIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAA-SIVGIEVNALVA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 107 LLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPV----PADsLFTFIGRAWVVGIPMPALIG 182
Cdd:PRK09512 100 VPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTgftdNAD-LFGWFGIGRPLGIPTPVWIM 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 183 IMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIA 262
Cdd:PRK09512 179 AIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIA 258
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 263 AVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTR 322
Cdd:PRK09512 259 AVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNK 318
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
27-317 |
2.08e-54 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 182.27 E-value: 2.08e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 27 IALFFVFccVVFSLITSN-FLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNNWGLPWPV 105
Cdd:NF040906 9 IALVAIV--VLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 106 VLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSI-PVP------------------------- 159
Cdd:NF040906 87 AVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIgPFPdgfqkissgflpdlfggtglhlltl 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 160 ---------------------------ADSLFTFIGRAWVV---------------GIPMPALIGIMILVIGHIVLNHMR 197
Cdd:NF040906 167 llgvlaaaalvwsqlrgrrrrikygleVEPMALFIAKLVLIaaailfftyllasyrGLPNVLIILGVLILVYSFVTNRTV 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 198 FGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGT 277
Cdd:NF040906 247 IGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGT 326
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 503995405 278 IIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAI 317
Cdd:NF040906 327 VVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAV 366
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
52-316 |
1.57e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 91.94 E-value: 1.57e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 52 LNIIRQSAPLLIVATAMTLVI-TTGGIDLSVGSTLALVGALSAIALNNWGLPWPVVLLGGLLLGGLVGAINGFFIAYEGI 130
Cdd:pfam02653 3 LNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 131 PAFIVTLATLAVVRGIALLV----TQGYSIPVPADSLFTFIGRAWVVGIPMPALIGIMILVIGHIVLNHMRFGRYVTAIG 206
Cdd:pfam02653 83 NEVIITLLLNLAALGLALFLvtgiLGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 207 ANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQ-GEGFELQVIAAVVLgstslfGGFGTIIGTLLGA 285
Cdd:pfam02653 163 ENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNfGVGLGLDAIAAVVL------GGAGSPIGVVIGS 236
|
250 260 270
....*....|....*....|....*....|..
gi 503995405 286 LSIAVIQN-GLILSHISPFYTQIATGTIILLA 316
Cdd:pfam02653 237 LIIGLVQSlGLGALGSPPELSLLVLGALLILV 268
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-323 |
7.67e-98 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 292.01 E-value: 7.67e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 12 SLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGAL 91
Cdd:COG1172 6 TTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 92 SAIALNNWGLPWPVVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSlFTFIGRAW 171
Cdd:COG1172 86 AALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDA-FRALGQGS 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 172 VVGIPMPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSN 251
Cdd:COG1172 165 LLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPN 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503995405 252 QGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTRI 323
Cdd:COG1172 245 AGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLR 316
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
58-320 |
1.72e-82 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 250.79 E-value: 1.72e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 58 SAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNNWGLPWPVVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTL 137
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 138 ATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVVGIPMPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGI 217
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 218 NTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLIL 297
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 503995405 298 SHISPFYTQIATGTIILLAIWLN 320
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
1-319 |
1.19e-79 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 247.72 E-value: 1.19e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 1 MNLSSSRMIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITS-NFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDL 79
Cdd:COG4214 1 MSTTAAPGGAVRSLRRLLGGDLRSLGMIIALVVIWIVFQILTGgTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 80 SVGSTLALVGALSAIALNNWGLPWPVVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPvP 159
Cdd:COG4214 81 SVGSVSGFVGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIA-P 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 160 ADSLFTFIGR----------AWVV------------------------------------------------------GI 175
Cdd:COG4214 160 FDPTFQAIGNgflpdilgtlSWVLgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrGI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 176 PMPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEG 255
Cdd:COG4214 240 PIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTG 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503995405 256 FELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWL 319
Cdd:COG4214 320 FELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAF 383
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
25-319 |
3.86e-73 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 229.43 E-value: 3.86e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 25 VSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNNWGLPWp 104
Cdd:COG4158 30 VGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLPGLGL- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 105 VVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPaDSLFTFIGRAWVVGIPMPALIGIM 184
Cdd:COG4158 109 LGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNP-DLPFAWIGNGYLLGIPWLVVIALA 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 185 ILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQ-GEGFELQVIAA 263
Cdd:COG4158 188 VVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLQlGQGYELDAIAA 267
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 503995405 264 VVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWL 319
Cdd:COG4158 268 VILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVAL 323
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
27-322 |
1.19e-64 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 206.88 E-value: 1.19e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 27 IALFFVFccVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAiALNNWGLPWPVV 106
Cdd:PRK09512 23 IALLVLI--AIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAA-SIVGIEVNALVA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 107 LLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPV----PADsLFTFIGRAWVVGIPMPALIG 182
Cdd:PRK09512 100 VPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTgftdNAD-LFGWFGIGRPLGIPTPVWIM 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 183 IMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIA 262
Cdd:PRK09512 179 AIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIA 258
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 263 AVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTR 322
Cdd:PRK09512 259 AVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNK 318
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
27-317 |
2.08e-54 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 182.27 E-value: 2.08e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 27 IALFFVFccVVFSLITSN-FLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNNWGLPWPV 105
Cdd:NF040906 9 IALVAIV--VLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 106 VLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSI-PVP------------------------- 159
Cdd:NF040906 87 AVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIgPFPdgfqkissgflpdlfggtglhlltl 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 160 ---------------------------ADSLFTFIGRAWVV---------------GIPMPALIGIMILVIGHIVLNHMR 197
Cdd:NF040906 167 llgvlaaaalvwsqlrgrrrrikygleVEPMALFIAKLVLIaaailfftyllasyrGLPNVLIILGVLILVYSFVTNRTV 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 198 FGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGT 277
Cdd:NF040906 247 IGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGT 326
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 503995405 278 IIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAI 317
Cdd:NF040906 327 VVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAV 366
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
29-320 |
2.37e-49 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 167.26 E-value: 2.37e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 29 LFFVFCCVVFSLITSN-FLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNNWGLPWPVVL 107
Cdd:PRK09699 16 FILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 108 LGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSI-PVPADSLFTFIGRawVVGIPMPALIGIMIL 186
Cdd:PRK09699 96 IGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVyGFSFDFVNFFAAS--VIGIPVPVIFSLIVA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 187 VIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVL 266
Cdd:PRK09699 174 LILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAII 253
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 503995405 267 GSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLN 320
Cdd:PRK09699 254 GGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
15-320 |
6.71e-48 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 164.08 E-value: 6.71e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 15 RRLLHNHSGVVSIALFFVFCCvvfsLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAI 94
Cdd:PRK11285 24 WRIWDQYGMLVVFAVLFIACS----LFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 95 ALNNWGLPWpVVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVvG 174
Cdd:PRK11285 100 VINATESLW-LGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYANFF-G 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 175 IPMPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGE 254
Cdd:PRK11285 178 VPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSI 257
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503995405 255 GFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLN 320
Cdd:PRK11285 258 GFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFD 323
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
24-319 |
1.26e-44 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 155.11 E-value: 1.26e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 24 VVSIALF---FVFCCVVFSlitsNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNNWG 100
Cdd:PRK11618 9 MITIGVFvlgYLFCLVQFP----GFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 101 LPWPVVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGySIPVPADSLFTFIGRAWVVG----IP 176
Cdd:PRK11618 85 WSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEE-SIPINHPFYDTLSSLAWKLPgggrLS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 177 MPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGF 256
Cdd:PRK11618 164 AMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGV 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503995405 257 ELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILS-HISPFYTQIATGTIILLAIWL 319
Cdd:PRK11618 244 ELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDgTLSSWWTKIVIGILLFVFIAL 307
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
28-322 |
1.45e-37 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 136.74 E-value: 1.45e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 28 ALFFVFCCVVFSLI--TSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIAL--------- 96
Cdd:PRK09478 17 GIYVVLLVLLAIIIiqDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLqsmdnankv 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 97 --NNWGLPWPVVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGY-SIPVPA-DSLFTFIGRAWV 172
Cdd:PRK09478 97 fpELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVgASPISGfDSGFSTFAQGFV 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 173 ----VGIPMPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSG 248
Cdd:PRK09478 177 algsFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSA 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 503995405 249 SSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTR 322
Cdd:PRK09478 257 TNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSL 330
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
17-323 |
6.14e-35 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 130.24 E-value: 6.14e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 17 LLHNHSGVVSIALFFVFccVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIAL 96
Cdd:PRK15432 5 IQNNRELTALLAIVLLF--VLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 97 NNwGLPWPVVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVvGIP 176
Cdd:PRK15432 83 NA-GYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILL-GIS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 177 MPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGF 256
Cdd:PRK15432 161 PIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503995405 257 ELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTRI 323
Cdd:PRK15432 241 EMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFDGRL 307
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
25-317 |
1.21e-25 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 104.53 E-value: 1.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 25 VSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVgALSAIALNNWGLPWP 104
Cdd:PRK15038 9 LALAALLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLC-AIALGVLFQSGVPMP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 105 VVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVT-----QGYSIPVPADSLFTFIGRAWVVGIPMPA 179
Cdd:PRK15038 88 LAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSgmagaTGYEGIGGFPMAFTDFANLDVLGLPVPL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 180 LIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQ 259
Cdd:PRK15038 168 IIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMP 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 503995405 260 VIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAI 317
Cdd:PRK15038 248 AITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
52-316 |
1.57e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 91.94 E-value: 1.57e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 52 LNIIRQSAPLLIVATAMTLVI-TTGGIDLSVGSTLALVGALSAIALNNWGLPWPVVLLGGLLLGGLVGAINGFFIAYEGI 130
Cdd:pfam02653 3 LNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 131 PAFIVTLATLAVVRGIALLV----TQGYSIPVPADSLFTFIGRAWVVGIPMPALIGIMILVIGHIVLNHMRFGRYVTAIG 206
Cdd:pfam02653 83 NEVIITLLLNLAALGLALFLvtgiLGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 207 ANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQ-GEGFELQVIAAVVLgstslfGGFGTIIGTLLGA 285
Cdd:pfam02653 163 ENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNfGVGLGLDAIAAVVL------GGAGSPIGVVIGS 236
|
250 260 270
....*....|....*....|....*....|..
gi 503995405 286 LSIAVIQN-GLILSHISPFYTQIATGTIILLA 316
Cdd:pfam02653 237 LIIGLVQSlGLGALGSPPELSLLVLGALLILV 268
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
60-317 |
2.71e-15 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 74.62 E-value: 2.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 60 PLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNNWGLPWPVVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLAT 139
Cdd:cd06574 3 IYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 140 LAVVRGIALLVTQGYSIPVP----ADSLFTFIGRAWVVGIPMPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRS 215
Cdd:cd06574 83 MIGLYSINLRIMGGPNIPLGtrdtLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 216 GINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVLGSTSL--FGGFGTIIGTLLGALSIAVIQN 293
Cdd:cd06574 163 GINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVgrRTIKASILGVIIGAILYRIALA 242
|
250 260
....*....|....*....|....
gi 503995405 294 GLILSHISPFYTQIATGTIILLAI 317
Cdd:cd06574 243 LALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
130-319 |
2.45e-12 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 66.24 E-value: 2.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 130 IPAFIVTLATLAVVRGIALLV--TQGYSIPVPADSLFTFIG------RAWVVGIpmpaliGIMILVIGHIVLNHMRFGRY 201
Cdd:COG0559 93 LALLLATIGLSLVLQGLVLLIfgADPRSFPALLSGSVELGGvsipayRLFIIVV------ALVLLAALWLFLRRTRLGLA 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 202 VTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSgSSNQGEGFELQVIAAVVLgstslfGGFGTIIGT 281
Cdd:COG0559 167 MRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSV-SPTMGFLLGLKAFAAVVL------GGLGSIPGA 239
|
170 180 190
....*....|....*....|....*....|....*...
gi 503995405 282 LLGALSIAVIQNgLILSHISPFYTQIATGTIILLAIWL 319
Cdd:COG0559 240 VVGGLLLGLAES-LGAAYLPSGYKDVVAFVLLILVLLV 276
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
61-319 |
8.89e-12 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 64.37 E-value: 8.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 61 LLIVATAMTLVI-TTGGIDLSVGSTLALVGALSAIALNNWGLP-WPVVLLGGLLLGGLVGAINGFFIAY---EGIPAFIV 135
Cdd:cd06582 8 YALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPfWLALLLALLVAALLGVLLERLVLRPlrgAPLLTLLI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 136 TLATLAVVRGIALLVTQGYSIPVPADSLFTFIgRAWVVGIPMPALI----GIMILVIGHIVLNHMRFGRYVTAIGANAEG 211
Cdd:cd06582 88 TFGGLLILLQGLLLIFGGDPRVPPPPLLSGSV-ELGGVTIPPYRLFiiavALVLLAALYLFLRRTRLGRAIRAVAQNPEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 212 ARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSgSSNQGEGFELQVIAAVVLgstslfGGFGTIIGTLLGALSIAVI 291
Cdd:cd06582 167 ARLLGINVRRVFALTFALGAALAGLAGVLLAPITGV-SPTMGLLLLLKAFAAVVL------GGLGSIPGAVVGGLLLGLA 239
|
250 260
....*....|....*....|....*...
gi 503995405 292 QNgLILSHISPFYTQIATGTIILLAIWL 319
Cdd:cd06582 240 ES-LAAAYLSSGYKDAVAFVLLILVLLV 266
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
63-317 |
2.77e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 60.15 E-value: 2.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 63 IVATAMTLVITTGGIdLSVG-STLALVGA-LSAIALNNWGLPWPVVLLGGLLLGGLVGAINGFFIA-YEGIPAFIVTLAT 139
Cdd:cd06581 6 ILALGLNLLLGYAGQ-LSLGhAAFFGIGAyTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALrLRGVYFAIATLAF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 140 LAVVRGIAL---LVTQGYS-IPVPADSLFTFIGRAWVVGIPMPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRS 215
Cdd:cd06581 85 AEIVRLLALnwsSLTGGSNgLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEAL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 216 GINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQ-GEGFELQVIAAVVLgstslfGGFGTIIGTLLGALSIAVIQNg 294
Cdd:cd06581 165 GINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESfGFALSIELLLMVVL------GGLGSLLGPVLGAALLVLLPE- 237
|
250 260
....*....|....*....|...
gi 503995405 295 lILSHISPFYTQIATGTIILLAI 317
Cdd:cd06581 238 -LLRSLGPGLRLLVFGLLLILVV 259
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
51-317 |
2.42e-08 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 54.32 E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 51 WLNIIRQSAPLLIVATAMTLVITTGGIdLSVG-STLALVGA-LSAIALNNWGLPWPVVLLGGLLLGGLVGAINGFFIA-Y 127
Cdd:COG4177 4 YLSLLTLILIYAILALGLNLLLGYTGL-LSLGhAAFFGIGAyAAALLTTHLGLPFWLALLLAGLVAALLGLLIGLPALrL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 128 EGIPAFIVTLATLAVVRGIAL---LVTQG----YSIPVPADSLFTFIGRAWVVGIPMPALIGIMILVIghiVLNHMRFGR 200
Cdd:COG4177 83 RGDYLAIATLAFAEIVRLLALnleSLTGGadglSGIPRPTLFGLDLGSPLAFYYLVLALLVLVLLLLR---RLVRSRFGR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 201 YVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQ-GEGFELQVIAAVVLgstslfGGFGTII 279
Cdd:COG4177 160 ALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESfSFLLSIEILLMVVL------GGLGSLL 233
|
250 260 270
....*....|....*....|....*....|....*...
gi 503995405 280 GTLLGALSIAVIQNGLilsHISPFYTQIATGTIILLAI 317
Cdd:COG4177 234 GPVLGAVLLVLLPELL---RSLPEYRLLIFGLLLILVV 268
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
180-317 |
3.05e-08 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 54.36 E-value: 3.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 180 LIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITA----RLGSGSSnQGEG 255
Cdd:COG4603 201 LIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEVLgvqgRLTPGFS-PGYG 279
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503995405 256 FElqVIAAVVLGStslfggfGTIIGTLLGALSIAVIQNG----LILSHISPFYTQIATGTIILLAI 317
Cdd:COG4603 280 FT--GIAVALLGR-------NNPLGIILAALLFGALYVGgdamQRALGVPSEIVDVIQGLIILFVL 336
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
180-316 |
3.20e-07 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 50.52 E-value: 3.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 180 LIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMI-ITARLGSGSSNQGEGFEL 258
Cdd:cd06580 99 LLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYlVLGVQGRFTEGMSAGYGF 178
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 503995405 259 QVIAAVVLgstslfgGFGTIIGTLLGALSIAVIQNGLI----LSHISPFYTQIATGTIILLA 316
Cdd:cd06580 179 IAIAVALL-------GRWNPLGILLAALLFGALEAGGIalqrSGGVPSELVQVLPGIIVLFV 233
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
155-290 |
1.37e-03 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 40.05 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 155 SIPVPADSLFTFIGRAwVVGIPMPALIGIMILVIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAA 234
Cdd:COG1079 128 PIPIPGLSDIPVLGPL-LFGQSPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALA 206
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 503995405 235 ALAGMIIT-ARLGSGSSNQGEGFELQVIAAVVLGS--------TSLFGGFGTIIGTLLGALSIAV 290
Cdd:COG1079 207 GLGGAYLSlGYVGSFTEGMTAGRGFIALAAVIFGRwrplgallAALLFGFADALQLRLQALGIGI 271
|
|
| COG4120 |
COG4120 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
78-319 |
1.46e-03 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443296 Cd Length: 296 Bit Score: 39.72 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 78 DLSVGSTLALVGALSAIALNNwGLPWPVVLLGGLLLGGLVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIP 157
Cdd:COG4120 34 DLTVDGSFPLGAAVAAVLIVA-GVNPFLATLAAFLAGALAGLVTGLLHTKLKIPPLLAGILTMTALYSINLRIMGKPNIP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 158 VPA-DSLFTFIGRAWVVGIPMPALIGIMILVIGHIVLN---HMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMA 233
Cdd:COG4120 113 LLGeDTIFTLLPDLGLPGDWAKLLVLLVIVLVIKLLLDwflKTELGLALRATGDNPQMARALGINTDRMKILGLALSNGL 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503995405 234 AALAGMIITARLGSGSSNQGEGFELQVIAAVVLGsTSLFGGFG---TIIGTLLGALSIAVIQNGLILSHISPFYTQIATG 310
Cdd:COG4120 193 VALSGALVAQYQGFADVNMGIGTIVIGLASVIIG-EVLFGSRSilrRLLAVVLGSILYRLIIALALQLGLPPNDLKLITA 271
|
....*....
gi 503995405 311 TIILLAIWL 319
Cdd:COG4120 272 LIVAIALAL 280
|
|
| |
