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Conserved domains on  [gi|504370548|ref|WP_014557650|]
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30S ribosomal protein S17 [Fervidicoccus fontis]

Protein Classification

30S ribosomal protein S17( domain architecture ID 11483352)

30S ribosomal protein S17 is one of the primary rRNA binding proteins; it binds specifically to the 5'-end of 16S ribosomal RNA and plays a role in translational accuracy

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps17p PRK08572
30S ribosomal protein S17P; Reviewed
 8-111 4.26e-49

30S ribosomal protein S17P; Reviewed


:

Pssm-ID: 236296 [Multi-domain]  Cd Length: 108  Bit Score: 151.61  E-value: 4.26e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504370548   8 KNPGIPgVSIPEKKCNDPNCPFHGTIKVRGMLITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPCLDVK 87
Cdd:PRK08572   1 RNIGLD-VKPPEEECDDPNCPFHGTLPVRGQVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHNPPCIDAK 79

                         90       100
                 ....*....|....*....|....
gi 504370548  88 IGDTVIIGETRPISKTVSFVVLGK 111
Cdd:PRK08572  80 VGDKVKIAECRPLSKTKSFVVVEK 103
 
Name Accession Description Interval E-value
rps17p PRK08572
30S ribosomal protein S17P; Reviewed
 8-111 4.26e-49

30S ribosomal protein S17P; Reviewed


Pssm-ID: 236296 [Multi-domain]  Cd Length: 108  Bit Score: 151.61  E-value: 4.26e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504370548   8 KNPGIPgVSIPEKKCNDPNCPFHGTIKVRGMLITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPCLDVK 87
Cdd:PRK08572   1 RNIGLD-VKPPEEECDDPNCPFHGTLPVRGQVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHNPPCIDAK 79

                         90       100
                 ....*....|....*....|....
gi 504370548  88 IGDTVIIGETRPISKTVSFVVLGK 111
Cdd:PRK08572  80 VGDKVKIAECRPLSKTKSFVVVEK 103
uS17_arch TIGR03630
ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal ...
 11-111 1.17e-48

ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal protein S17P. It excludes the homologous ribosomal protein S17 from bacteria, and is not intended for use on eukaryotic sequences, where some instances of ribosomal proteins S11 score above the trusted cutoff. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274687 [Multi-domain]  Cd Length: 102  Bit Score: 150.53  E-value: 1.17e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504370548   11 GIPgVSIPEKKCNDPNCPFHGTIKVRGMLITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPCLDVKIGD 90
Cdd:TIGR03630   2 GIP-VKPPEEECNDPKCPFHGHLKVRGQILEGVVVSDKMNKTVVVEREYLYYIRKYERYERRRSKIHAHNPPCIDVKVGD 80

                          90       100
                  ....*....|....*....|.
gi 504370548   91 TVIIGETRPISKTVSFVVLGK 111
Cdd:TIGR03630  81 IVIIAETRPLSKTKSFVVLGK 101
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 34-111 6.81e-24

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 87.10  E-value: 6.81e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504370548  34 KVRGMLITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPClDVKIGDTVIIGETRPISKTVSFVVLGK 111
Cdd:COG0186    5 RVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENN-ECKVGDTVRIMETRPLSKTKRWRVVEI 81
Ribosomal_S17 pfam00366
Ribosomal protein S17;
42-110 1.74e-22

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 83.21  E-value: 1.74e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504370548   42 GKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPCLdVKIGDTVIIGETRPISKTVSFVVLG 110
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNE-CKVGDVVRIGECRPLSKTKRWVVVE 68
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 40-109 3.80e-21

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 79.78  E-value: 3.80e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504370548  40 ITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPcLDVKIGDTVIIGETRPISKTVSFVVL 109
Cdd:cd00364    3 LIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEP-NECKVGDIVRIGECRPLSKTKRWVVV 71
 
Name Accession Description Interval E-value
rps17p PRK08572
30S ribosomal protein S17P; Reviewed
 8-111 4.26e-49

30S ribosomal protein S17P; Reviewed


Pssm-ID: 236296 [Multi-domain]  Cd Length: 108  Bit Score: 151.61  E-value: 4.26e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504370548   8 KNPGIPgVSIPEKKCNDPNCPFHGTIKVRGMLITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPCLDVK 87
Cdd:PRK08572   1 RNIGLD-VKPPEEECDDPNCPFHGTLPVRGQVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHNPPCIDAK 79

                         90       100
                 ....*....|....*....|....
gi 504370548  88 IGDTVIIGETRPISKTVSFVVLGK 111
Cdd:PRK08572  80 VGDKVKIAECRPLSKTKSFVVVEK 103
uS17_arch TIGR03630
ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal ...
 11-111 1.17e-48

ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal protein S17P. It excludes the homologous ribosomal protein S17 from bacteria, and is not intended for use on eukaryotic sequences, where some instances of ribosomal proteins S11 score above the trusted cutoff. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274687 [Multi-domain]  Cd Length: 102  Bit Score: 150.53  E-value: 1.17e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504370548   11 GIPgVSIPEKKCNDPNCPFHGTIKVRGMLITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPCLDVKIGD 90
Cdd:TIGR03630   2 GIP-VKPPEEECNDPKCPFHGHLKVRGQILEGVVVSDKMNKTVVVEREYLYYIRKYERYERRRSKIHAHNPPCIDVKVGD 80

                          90       100
                  ....*....|....*....|.
gi 504370548   91 TVIIGETRPISKTVSFVVLGK 111
Cdd:TIGR03630  81 IVIIAETRPLSKTKSFVVLGK 101
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 34-111 6.81e-24

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 87.10  E-value: 6.81e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504370548  34 KVRGMLITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPClDVKIGDTVIIGETRPISKTVSFVVLGK 111
Cdd:COG0186    5 RVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENN-ECKVGDTVRIMETRPLSKTKRWRVVEI 81
Ribosomal_S17 pfam00366
Ribosomal protein S17;
42-110 1.74e-22

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 83.21  E-value: 1.74e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504370548   42 GKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPCLdVKIGDTVIIGETRPISKTVSFVVLG 110
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNE-CKVGDVVRIGECRPLSKTKRWVVVE 68
PTZ00241 PTZ00241
40S ribosomal protein S11; Provisional
 8-109 2.63e-22

40S ribosomal protein S11; Provisional


Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 85.52  E-value: 2.63e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504370548   8 KNPGIpGVSIPEKKCN----DPNCPFHGTIKVRGMLITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPC 83
Cdd:PTZ00241  36 KKVGL-GFKTPKEAIEgkyiDKKCPFTGNVSIRGRILRGVVISTKMKRTIIIRRDYLHYVKKYNRYEKRHKNIPVHCSPC 114

                         90       100
                 ....*....|....*....|....*.
gi 504370548  84 LDVKIGDTVIIGETRPISKTVSFVVL 109
Cdd:PTZ00241 115 FDVKEGDIVVVGQCRPLSKTVRFNVL 140
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 40-109 3.80e-21

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 79.78  E-value: 3.80e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504370548  40 ITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHVSPcLDVKIGDTVIIGETRPISKTVSFVVL 109
Cdd:cd00364    3 LIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEP-NECKVGDIVRIGECRPLSKTKRWVVV 71
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
 40-108 3.76e-11

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 54.78  E-value: 3.76e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504370548  40 ITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHvspclD----VKIGDTVIIGETRPISKTVSFVV 108
Cdd:PRK05610   9 LQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAH-----DenneAKIGDVVRIMETRPLSKTKRWRL 76
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
 40-108 3.39e-10

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 51.77  E-value: 3.39e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504370548   40 ITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHvspclD----VKIGDTVIIGETRPISKTVSFVV 108
Cdd:TIGR03635   4 LQGVVVSDKMDKTVVVLVERRVKHPLYKKIVKRTKKYHAH-----DenneCKVGDVVRIIETRPLSKTKRWRL 71
rps17 CHL00142
ribosomal protein S17; Validated
 40-103 1.81e-07

ribosomal protein S17; Validated


Pssm-ID: 177064  Cd Length: 84  Bit Score: 45.04  E-value: 1.81e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504370548  40 ITGKVVSDKMDGTVVVVHDYLYYDKKYKRYEKRKSKIHAHvSPCLDVKIGDTVIIGETRPISKT 103
Cdd:CHL00142   6 KIGIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKYLVH-DEENECNIGDQVLIEETRPLSKT 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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