|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
4-341 |
9.80e-102 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 302.03 E-value: 9.80e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 4 MTSKTPTPVTRTGRFdpiafFERFGVLIFMILLLIFFQSQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGIDLSV 83
Cdd:COG1172 1 MSATTTTARSLLRRL-----LPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 84 GSILAVCAMTAAYVIkgdnfttvdvsAWGGMSWLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVI 163
Cdd:COG1172 76 GSVVALSGVVAALLL-----------VALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 164 NDGAPIAGFDPGYRWWGRGELIGISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIG 243
Cdd:COG1172 145 TGGRPISGLPDAFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSG 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 244 CLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGL 323
Cdd:COG1172 225 LLAGLAGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGA 304
|
330
....*....|....*...
gi 506351718 324 IIILAVAFDTYAKSRRGA 341
Cdd:COG1172 305 IILLAVLLDRLRRRRRAR 322
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
27-341 |
1.38e-83 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 258.12 E-value: 1.38e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 27 FGVLIFMILLLIFFQSQN-GNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAMTAAYVIkgdnftt 105
Cdd:COG4214 25 LGMIIALVVIWIVFQILTgGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLM------- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 106 vdvsAWGGMSWLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDPGYR-------- 177
Cdd:COG4214 98 ----VNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQaigngflp 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 178 -WWGRGELI-------------------------------------------------------GISIPIWIFALVAIGG 201
Cdd:COG4214 174 dILGTLSWVlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrGIPIVVLILLVLVVVY 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 202 YLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGT 281
Cdd:COG4214 254 TFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGT 333
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 282 SLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIILAVAFDTYAKSRRGA 341
Cdd:COG4214 334 SLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRRGA 393
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
60-332 |
1.57e-78 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 240.77 E-value: 1.57e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 60 VSIYGIMAVGMTFVILTAGIDLSVGSILAVCAMTAAYVIkgdnfttvdvsAWGGMSWLIGLGICLSMGTVIGFLHGLGVT 139
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLL-----------VNAGLPIPLAILAALAVGALIGLLNGLLVA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 140 RLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDPGYRW-WGRGELIGISIPIWIFALVAIGGYLALHKTRWGRFVYAIG 218
Cdd:cd06579 70 YLRIPPFIVTLGTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 219 GNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSI 298
Cdd:cd06579 150 GNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGAL 229
|
250 260 270
....*....|....*....|....*....|....
gi 506351718 299 IMGILINGLVLMNVSAYYQQIITGLIIILAVAFD 332
Cdd:cd06579 230 LLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
1-334 |
4.27e-75 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 234.44 E-value: 4.27e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 1 MTQMTSKTPTPVTR---TGRFDPIAFFERFGVLIFMILLLIFFQSQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTA 77
Cdd:COG4158 1 MTTSPPAPAAPSAApaaARRFRLRSLLQAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 78 GIDLSVGSILAVCAMTAayvikgdnfttVDVSAWGGMSWLiGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWR 157
Cdd:COG4158 81 GIDLSVGSILAASAVVA-----------VLVSLLPGLGLL-GIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 158 GLTLVINDGAPIAGFDPGYRWWGRGELIGISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVS 237
Cdd:COG4158 149 GAARLLANGTTVFNPDLPFAWIGNGYLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLF 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 238 VYVLIGCLAGLAGFILSARLGSAEAV-AGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYY 316
Cdd:COG4158 229 VYAVSGLLAGLGGVMSAARLYAANGLqLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFW 308
|
330
....*....|....*...
gi 506351718 317 QQIITGLIIILAVAFDTY 334
Cdd:COG4158 309 QFIIKGLVIIIAVALDRY 326
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
30-336 |
6.80e-74 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 231.14 E-value: 6.80e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 30 LIFMILLLIFFQSQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAMTAAYVIkgdnftTVDVS 109
Cdd:PRK09512 22 LIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIV------GIEVN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 110 AwggmswLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPI-AGFDPG---YRWWGRGELI 185
Cdd:PRK09512 96 A------LVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPInTGFTDNadlFGWFGIGRPL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 186 GISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEAVAG 265
Cdd:PRK09512 170 GIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAG 249
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 506351718 266 ISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIILAVAFDTYAK 336
Cdd:PRK09512 250 TGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
1-341 |
1.80e-55 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 184.11 E-value: 1.80e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 1 MTQMTSKTPTPVTRTGRFDPIAFFERFGVLIFMILLLIFFQSQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGID 80
Cdd:PRK11285 4 VSTSGSGAAAAAPPKSRFSLWRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 81 LSVGSILAVCAMTAAYVIKGDNfttvdvsawggmSWLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLT 160
Cdd:PRK11285 84 LSVASVVAFAGVVTAVVINATE------------SLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 161 LVINDGAPIAGFDPGYRWWGRGELIGISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYV 240
Cdd:PRK11285 152 YIISDGKAVGISDERFFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFV 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 241 LIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQII 320
Cdd:PRK11285 232 LQGLVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVV 311
|
330 340
....*....|....*....|.
gi 506351718 321 TGLIIILAVAFDTYAKSRRGA 341
Cdd:PRK11285 312 RGLILLAAVLFDRYKQRAKRT 332
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
27-338 |
3.30e-55 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 184.58 E-value: 3.30e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 27 FGVLIFMILLLIFFQ-SQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAMTAAYVIkgdnftt 105
Cdd:NF040906 5 YGMLIALVAIVVLFQiLTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLM------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 106 vdVSAwgGMSWLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDPGYR-------- 177
Cdd:NF040906 78 --VNW--GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQkissgflp 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 178 ---------------------------WWGRGELIGISIP-----------------------------------IWIFA 195
Cdd:NF040906 154 dlfggtglhlltlllgvlaaaalvwsqLRGRRRRIKYGLEvepmalfiaklvliaaailfftyllasyrglpnvlIILGV 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 196 LVAIGGYLAlHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEAVAGISFELRVIAS 275
Cdd:NF040906 234 LILVYSFVT-NRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAA 312
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 506351718 276 VVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIILAVAFDTYAKSR 338
Cdd:NF040906 313 CFIGGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
16-332 |
1.95e-52 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 175.35 E-value: 1.95e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 16 GRFDPIAFFERFG-VLIFMILLLIFFQSQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAM-T 93
Cdd:PRK09699 1 KPFNFALFWDKYGtFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMvT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 94 AAYVIKGdnFTTVDVSAWGGmswliglgicLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFD 173
Cdd:PRK09699 81 AKLMLAG--VDPFLAALIGG----------VLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 174 PGYRWWGRGELIGISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFIL 253
Cdd:PRK09699 149 FDFVNFFAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVS 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 506351718 254 SARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIILAVAFD 332
Cdd:PRK09699 229 TARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
21-336 |
5.41e-52 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 174.88 E-value: 5.41e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 21 IAFFERFGVLIFMILLLIFFQSQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAMTAAYVIKG 100
Cdd:PRK09478 10 LTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 101 DNFTTVDVSAWGGMSWLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVIND---GAPIAGFDPGYR 177
Cdd:PRK09478 90 MDNANKVFPELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgASPISGFDSGFS 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 178 WWGRGELI--GISIP-IWIFALVAIG-GYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFIL 253
Cdd:PRK09478 170 TFAQGFVAlgSFRLSyITFYALIAVAfVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLE 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 254 SARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIILAVAFDT 333
Cdd:PRK09478 250 AGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDS 329
|
....*
gi 506351718 334 --YAK 336
Cdd:PRK09478 330 lkYAR 334
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
34-283 |
2.48e-41 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 146.64 E-value: 2.48e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 34 ILLLIFFQSQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAMtaayvikgdnFTTVDVSAWGG 113
Cdd:PRK11618 16 VLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGV----------FLAKLIGDYGW 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 114 MSWLIgLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVIN-DGAPIAgfDPGY--------RWWGRGEL 184
Cdd:PRK11618 86 SPLLA-FPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSeESIPIN--HPFYdtlsslawKLPGGGRL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 185 IGISIpiwIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEAVA 264
Cdd:PRK11618 163 SAMAL---IMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALA 239
|
250
....*....|....*....
gi 506351718 265 GISFELRVIASVVIGGTSL 283
Cdd:PRK11618 240 AVGVELDAIAAVVIGGTLL 258
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
29-332 |
2.07e-35 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 131.78 E-value: 2.07e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 29 VLIFMILLLIFFQSQNGNFFSERNIVNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVCAMTaayvikgdnfttVDV 108
Cdd:PRK15432 13 ALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVL------------VGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 109 SAWGGMSWLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDPGYRWWGRGELIGIS 188
Cdd:PRK15432 81 LLNAGYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGIS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 189 IPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEAVAGISF 268
Cdd:PRK15432 161 PIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 506351718 269 ELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIILAVAFD 332
Cdd:PRK15432 241 EMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
52-281 |
1.17e-24 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 100.80 E-value: 1.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 52 NIVNILTEVSIYGIMAVGMTFVILTAG-IDLSVGSILAVCAMTAAYVIKGdnfttvdvsawGGMSWLIGLGICLSMGTVI 130
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGIAGvINLGHGGFMMLGAYVAAMLLNL-----------LGPGLWLALPVGILVGAAV 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 131 GFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVIND----GAPIAGFDPGYRWWGRGELIGISIPIWIFALVA-IGGYLAL 205
Cdd:pfam02653 70 GLLIGILTLRLKINEVIITLLLNLAALGLALFLVTgilgGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLvLALWLLL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 506351718 206 HKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEAV-AGISFELRVIASVVIGGT 281
Cdd:pfam02653 150 YRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGA 226
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
64-329 |
3.05e-20 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 89.89 E-value: 3.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 64 GIMAVGMTFVILTAGIDLSVGSILAVCAMTAAYVIKGdnfttvdvsawgGMSWLIGLGICLSMGTVIGFLHGLGVTRLRL 143
Cdd:PRK15038 46 GIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQS------------GVPMPLAILLTLLLGALCGLINAGLIIYTGV 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 144 PPFIVTLGGMTIWRGLTLVINDGAP------IAGFDPGYRWWGRGELIGISIPIWIFALVAIGGYLALHKTRWGRFVYAI 217
Cdd:PRK15038 114 NPLVITLGTLYLFGGSALLLSGMAGatgyegIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLI 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 218 GGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGS 297
Cdd:PRK15038 194 GQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAV 273
|
250 260 270
....*....|....*....|....*....|..
gi 506351718 298 IIMGILINGLVLMNVSAYYQQIITGLIIILAV 329
Cdd:PRK15038 274 LLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
61-329 |
1.63e-19 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 86.56 E-value: 1.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 61 SIYGIMAVGMTFVILTAGI-DLSVGSILAVCAMTAAYVIkgdnfttvdvsaWGGMSWLIGLGICLSMGTVIGFLHGLGVT 139
Cdd:cd06574 2 LIYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILI------------VAGYNPWLALIAAILAGAAAGLVTGFLHT 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 140 RLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFD-----PGYRWWGRGELIGISIPIWIFALVAIGGYLALHKTRWGRFV 214
Cdd:cd06574 70 RLKINGLLAGILIMIGLYSINLRIMGGPNIPLGTrdtllGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 215 YAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTI 294
Cdd:cd06574 150 RATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRRTIKASILG 229
|
250 260 270
....*....|....*....|....*....|....*..
gi 506351718 295 IGSIIMGILINGLVLMNVS--AYYQQIITGLIIILAV 329
Cdd:cd06574 230 VIIGAILYRIALALALGSGliPSDLKLITAGVIVLVL 266
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
53-280 |
3.12e-14 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 72.02 E-value: 3.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 53 IVNILTEVSIYGIMAVGMTFVILTAG-IDLSVGSILAVCAMTAAYVIkgdnfttvdvsAWGGMSWLIGLGICLSMGTVIG 131
Cdd:COG0559 8 LLNGLSLGSIYALIALGLTLIFGVMGvINFAHGEFVMLGAYVAYTLA-----------TLLGLPLWLALLLAVLVAALLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 132 FLHGLGVTRL-----RLPPFIVTLGGMTIWRGLTLVINDGAPIAgFDPGYRwwGRGELIGISIP---IWIFA---LVAIG 200
Cdd:COG0559 77 VLLERLVIRPlrgapPLALLLATIGLSLVLQGLVLLIFGADPRS-FPALLS--GSVELGGVSIPayrLFIIVvalVLLAA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 201 GYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLgSAEAVAGISFELRVIASVVIGG 280
Cdd:COG0559 154 LWLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIY-SVSPTMGFLLGLKAFAAVVLGG 232
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
61-280 |
8.38e-14 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 70.54 E-value: 8.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 61 SIYGIMAVGMTFVILTAG-IDLSVGSILAVCAMTAAYVikgdnfttvdVSAWGGMSWLIGLGICLSMGTVIGFLHGLGVT 139
Cdd:cd06582 6 AIYALIALGLTLIFGVTGvINFAHGEFYMLGAYVAYTL----------LVALGLPFWLALLLALLVAALLGVLLERLVLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 140 RLR---LPPFIVTLGGMTIWRGLTLVINDGAPIAGFDPGYRwwGRGELIGISIP---IWIFA---LVAIGGYLALHKTRW 210
Cdd:cd06582 76 PLRgapLLTLLITFGGLLILLQGLLLIFGGDPRVPPPPLLS--GSVELGGVTIPpyrLFIIAvalVLLAALYLFLRRTRL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 211 GRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGsAEAVAGISFELRVIASVVIGG 280
Cdd:cd06582 154 GRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITG-VSPTMGLLLLLKAFAAVVLGG 222
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
53-280 |
5.80e-12 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 65.10 E-value: 5.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 53 IVNILTEVSIYGIMAVGMTFVILTAG-IDLSVGSILAVCAMTAAYVikgdnfttvdvSAWGGMSWLIGLGICLSMGTVIG 131
Cdd:COG4177 4 YLSLLTLILIYAILALGLNLLLGYTGlLSLGHAAFFGIGAYAAALL-----------TTHLGLPFWLALLLAGLVAALLG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 132 FLHGLGVTRLRLPPF-IVTLGGMTIwrgLTLVINDGAPIAGFDPGYRWWGRGELIGISIP--------IWIFALVAIGGY 202
Cdd:COG4177 73 LLIGLPALRLRGDYLaIATLAFAEI---VRLLALNLESLTGGADGLSGIPRPTLFGLDLGsplafyylVLALLVLVLLLL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 506351718 203 LALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEA-VAGISFELRVIASVVIGG 280
Cdd:COG4177 150 RRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPeSFSFLLSIEILLMVVLGG 228
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
60-281 |
4.45e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 62.46 E-value: 4.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 60 VSIYGIMAVGMTFVILTAG-IDLSVGSILAVCAMTAAYVikgdnfttvdvSAWGGMSWLIGLGICLSMGTVIGFLHGLGV 138
Cdd:cd06581 1 ILIYAILALGLNLLLGYAGqLSLGHAAFFGIGAYTAALL-----------ATRLGLPFWLALLAAGLVAALVGLLLGLPA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 139 TRLRLPPF-IVTLGGMTIwrgLTLVINDGAPIAGFD--------PGYRWWGRGELIGISIPIWIFALVAIGGYLALHKTR 209
Cdd:cd06581 70 LRLRGVYFaIATLAFAEI---VRLLALNWSSLTGGSnglsgippPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSP 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 506351718 210 WGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEA-VAGISFELRVIASVVIGGT 281
Cdd:cd06581 147 FGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPeSFGFALSIELLLMVVLGGL 219
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
115-255 |
2.93e-09 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 56.68 E-value: 2.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 115 SWLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRGLTLVIndgapiagfdpgyrwwgrgeligisipIWIF 194
Cdd:cd06580 49 SLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLTSYL---------------------------LLLA 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 506351718 195 ALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSA 255
Cdd:cd06580 102 LLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVL 162
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
160-252 |
3.50e-09 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 57.44 E-value: 3.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 160 TLVINDGAPIAGFDPGYRwwgrgeligISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVY 239
Cdd:COG4603 178 TPPIPESARLPRLLPGTR---------LHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAM 248
|
90
....*....|...
gi 506351718 240 VLIGCLAGLAGFI 252
Cdd:COG4603 249 LISGALAGLAGAV 261
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
79-254 |
2.22e-07 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 51.61 E-value: 2.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 79 IDLSVGSILAVCAMTAAYVikgdnfttvdvsAWGGMSWLIGLGICLSMGTVIGFLHGLGVTRLRLPPFIVTLGGMTIWRG 158
Cdd:COG1079 37 LNIGLEGMMLMGAFAGFAV------------AYLTGSPWLGLLAAALAGALLALLHAFLTITLRANQIVSGLALNLLALG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 159 LTLVI--------NDGAPIAGFDPgYRWWGRGE-------LIGISIPIWIFALVAIGGYLALHKTRWGRFVYAIGGNPEA 223
Cdd:COG1079 105 LTAFLgrllfgqgGQTPSIPGLPP-IPIPGLSDipvlgplLFGQSPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAA 183
|
170 180 190
....*....|....*....|....*....|..
gi 506351718 224 ARLAGVNVKRVLVsVYVLI-GCLAGLAGFILS 254
Cdd:COG1079 184 ADALGINVYRIRY-LAVLIgGALAGLGGAYLS 214
|
|
| COG4120 |
COG4120 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
62-279 |
3.15e-03 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443296 Cd Length: 296 Bit Score: 38.95 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 62 IYGIMAVG--MTFVILTAGiDLSV-GSIL---AVCAMTAAyvikgdnfttvdvsawGGMSWLIGLGICLSMGTVIGFLHG 135
Cdd:COG4120 15 IYAIMALGvyITFRILDFP-DLTVdGSFPlgaAVAAVLIV----------------AGVNPFLATLAAFLAGALAGLVTG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 136 LGVTRLRLPPF---IVTlggMTIWRGLTLVINDGAPIA------GFDPGYRWWGRGELIGISIPIwIFALVAIGGYLALH 206
Cdd:COG4120 78 LLHTKLKIPPLlagILT---MTALYSINLRIMGKPNIPllgedtIFTLLPDLGLPGDWAKLLVLL-VIVLVIKLLLDWFL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 506351718 207 KTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVLIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIG 279
Cdd:COG4120 154 KTELGLALRATGDNPQMARALGINTDRMKILGLALSNGLVALSGALVAQYQGFADVNMGIGTIVIGLASVIIG 226
|
|
| livM |
PRK11301 |
leucine/isoleucine/valine transporter permease subunit; Provisional |
47-151 |
3.77e-03 |
|
leucine/isoleucine/valine transporter permease subunit; Provisional
Pssm-ID: 236896 [Multi-domain] Cd Length: 419 Bit Score: 38.80 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 506351718 47 FFSERNIVNILTEVSIYGIMAVGMTFVILTAGI-DLSVGSILAVCAMTAAYVikgdnfttvdvSAWGGMSWLIGLGICLS 125
Cdd:PRK11301 105 FFVSRGAVDIATLTLIYVILGLGLNVVVGLAGLlDLGYVGFYAVGAYTYALL-----------NHYYGLGFWECLPIAGL 173
|
90 100
....*....|....*....|....*....
gi 506351718 126 MGTVIGFLHGLGVTRLR---LPpfIVTLG 151
Cdd:PRK11301 174 MAALFGFLLGFPVLRLRgdyLA--IVTLG 200
|
|
| |
