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Conserved domains on  [gi|515643904|ref|WP_017076504|]
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MULTISPECIES: DUF3316 domain-containing protein [Vibrio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3316 super family cl13255
Protein of unknown function (DUF3316); This family of bacterial proteins has no known function. ...
 5-110 1.65e-17

Protein of unknown function (DUF3316); This family of bacterial proteins has no known function. Several members are, however, annotated as being putative acyl-CoA synthetase, but this could not be confirmed.


The actual alignment was detected with superfamily member pfam11777:

Pssm-ID: 432067  Cd Length: 142  Bit Score: 72.52  E-value: 1.65e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515643904    5 IILASTLVLSTTAFAATKTTIQETTLKSDTFVTEAEAYDAGTNLMDELSAKTPFELSRELPQFQQTTKydSFKIDDANME 84
Cdd:pfam11777   1 LLLLLLLLLSSSAFAQYDSITDADSLQANRFVTRATAYGAGYTNLLDTYLSPSEYLGKELRILSETMR--STKLDDGRVS 78

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 515643904   85 VKKITN---------MSGDIHYQANVKVDYRYTYK 110
Cdd:pfam11777  79 VQEFFQadlaytdnrAGGGIEYSGLVNVDYGLHYQ 113
 
Name Accession Description Interval E-value
DUF3316 pfam11777
Protein of unknown function (DUF3316); This family of bacterial proteins has no known function. ...
 5-110 1.65e-17

Protein of unknown function (DUF3316); This family of bacterial proteins has no known function. Several members are, however, annotated as being putative acyl-CoA synthetase, but this could not be confirmed.


Pssm-ID: 432067  Cd Length: 142  Bit Score: 72.52  E-value: 1.65e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515643904    5 IILASTLVLSTTAFAATKTTIQETTLKSDTFVTEAEAYDAGTNLMDELSAKTPFELSRELPQFQQTTKydSFKIDDANME 84
Cdd:pfam11777   1 LLLLLLLLLSSSAFAQYDSITDADSLQANRFVTRATAYGAGYTNLLDTYLSPSEYLGKELRILSETMR--STKLDDGRVS 78

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 515643904   85 VKKITN---------MSGDIHYQANVKVDYRYTYK 110
Cdd:pfam11777  79 VQEFFQadlaytdnrAGGGIEYSGLVNVDYGLHYQ 113
 
Name Accession Description Interval E-value
DUF3316 pfam11777
Protein of unknown function (DUF3316); This family of bacterial proteins has no known function. ...
 5-110 1.65e-17

Protein of unknown function (DUF3316); This family of bacterial proteins has no known function. Several members are, however, annotated as being putative acyl-CoA synthetase, but this could not be confirmed.


Pssm-ID: 432067  Cd Length: 142  Bit Score: 72.52  E-value: 1.65e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515643904    5 IILASTLVLSTTAFAATKTTIQETTLKSDTFVTEAEAYDAGTNLMDELSAKTPFELSRELPQFQQTTKydSFKIDDANME 84
Cdd:pfam11777   1 LLLLLLLLLSSSAFAQYDSITDADSLQANRFVTRATAYGAGYTNLLDTYLSPSEYLGKELRILSETMR--STKLDDGRVS 78

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 515643904   85 VKKITN---------MSGDIHYQANVKVDYRYTYK 110
Cdd:pfam11777  79 VQEFFQadlaytdnrAGGGIEYSGLVNVDYGLHYQ 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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