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Conserved domains on  [gi|515644230|ref|WP_017076830|]
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MULTISPECIES: flagellar hook protein FlgE [Vibrio]

Protein Classification

flagellar hook protein FlgE( domain architecture ID 11481483)

flagellar hook protein FlgE functions as a nano-sized universal joint, which is essential for dynamic and efficient bacterial motility and taxis

CATH:  2.60.98.20
Gene Ontology:  GO:0071973
SCOP:  4003129

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-434 2.50e-160

flagellar hook protein FlgE; Validated


:

Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 458.15  E-value: 2.50e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNaKTTAGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:PRK05682   2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  81 LRVSGTGFFAVSKDRMVpeinELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEV--LSYAPKPLDIPAEFGKPKQTE 158
Cdd:PRK05682  81 LAISGNGFFVVSNGGNG----FYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPptVGAGLVPLNIPTTALAPKATT 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 159 NIEVGVNLPANGDLKDPaafnfkDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMSDENGEKPVNitgg 238
Cdd:PRK05682 157 SGTFQGNLPSTAAFDPT------DPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTTAT---- 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 239 datnaqGHVGHTMKFNNDGTLASlnngqpiNSEALGAGANPIDLNGADPTQVLKFGLDSSTQFAAPFELTKFDEDGATTG 318
Cdd:PRK05682 225 ------GTGTTTLTFDSNGALTT-------TTSPTTFNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGYAPG 291

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 319 FLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNGSLEQSNID 398
Cdd:PRK05682 292 TLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVD 371

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 515644230 399 MTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:PRK05682 372 LSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
 
Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-434 2.50e-160

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 458.15  E-value: 2.50e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNaKTTAGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:PRK05682   2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  81 LRVSGTGFFAVSKDRMVpeinELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEV--LSYAPKPLDIPAEFGKPKQTE 158
Cdd:PRK05682  81 LAISGNGFFVVSNGGNG----FYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPptVGAGLVPLNIPTTALAPKATT 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 159 NIEVGVNLPANGDLKDPaafnfkDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMSDENGEKPVNitgg 238
Cdd:PRK05682 157 SGTFQGNLPSTAAFDPT------DPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTTAT---- 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 239 datnaqGHVGHTMKFNNDGTLASlnngqpiNSEALGAGANPIDLNGADPTQVLKFGLDSSTQFAAPFELTKFDEDGATTG 318
Cdd:PRK05682 225 ------GTGTTTLTFDSNGALTT-------TTSPTTFNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGYAPG 291

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 319 FLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNGSLEQSNID 398
Cdd:PRK05682 292 TLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVD 371

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 515644230 399 MTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:PRK05682 372 LSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-434 1.57e-141

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 410.72  E-value: 1.57e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   1 MS-YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTAGGGAQASQVAQQFHEGSSIYTNNPM 79
Cdd:COG1749    3 MSfNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLSGANPTQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  80 DLRVSGTGFFAVSKDrmvPEINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNsGEVL--SYAPKPLDIPAEFGKPKQT 157
Cdd:COG1749   83 DLAISGNGFFVVSDS---GGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADAD-GTIPdtGGGLEPIQIPTGQLPAKAT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 158 ENIEVGVNLPANGDLKDpAAFNFKDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMSDENgekpvnITG 237
Cdd:COG1749  159 TKVTLGGNLPADATVPT-APFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTK--TGANTWTVYVTVDGAD------VTG 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 238 GDATNAQGhvghTMKFNNDGTLASLNNGQPINSealgaganPIDLNGADPTQVlKFGLDSSTQFAAPFELTKFDEDGATT 317
Cdd:COG1749  230 GTGATGTG----TLTFDSNGKLTSPTSGGPGTL--------TLTVNGAAPQTI-TLDLSGLTQYASSFSVTSLTQDGYAA 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 318 GFLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNGSLEQSNI 397
Cdd:COG1749  297 GTLTGVSIDDDGVVTATYSNGQTRPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNV 376

                        410       420       430
                 ....*....|....*....|....*....|....*..
gi 515644230 398 DMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:COG1749  377 DLAEELVNMIVAQRAYQANAKVITTSDEMLQTLVNLK 413
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-416 5.83e-51

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 171.67  E-value: 5.83e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230    1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNakTTAGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGS--GQVGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   81 LRVSGTGFFAVSKDrmvPEINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPnsgevlsyapkpldipaefgkpkqteni 160
Cdd:TIGR03506  80 LAISGDGFFVVQTP---DGSEAYTRAGSFKLDADGYLVTSDGYPLLDWGGGP---------------------------- 128

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  161 evgVNLPANGdlkdpaafnfkdadtynratsstvydsmgqsyklttyylkdqtqpntwqtyytmsdengekpvnitggda 240
Cdd:TIGR03506 129 ---ITLPPDA---------------------------------------------------------------------- 135

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  241 tnaqghvghtmkfnndgtlaslnngqpinsealgaganpidlngadptqvlkfgldsstqfaapfeltkfdedgattgfl 320
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  321 TKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNGSLEQSNIDMT 400
Cdd:TIGR03506 136 GSVSIGEDGTVSATYSNGQTVELGQIALANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLA 215

                         410
                  ....*....|....*.
gi 515644230  401 QELVDLISAQRNFQAN 416
Cdd:TIGR03506 216 EELVNMISAQRAYQAN 231
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 187-314 6.52e-18

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 78.60  E-value: 6.52e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  187 NRATSSTVYDSMGQSYKLTTYYLKDQTQPNTWQTYYTMSDENGekPVNITGGDATNAQGHVGHTMKFNNdgtlaslnngq 266
Cdd:pfam07559   1 NYSTSVTVYDSLGNSHTLTVYFVKTATGPNTWEVYVTVDGEVG--DGDGTAGTASTAGGLMTGTLTFDS----------- 67

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 515644230  267 pinsealgaganpIDLNgadptqvlkFGLDSSTQFAAPFELTKFDEDG 314
Cdd:pfam07559  68 -------------ITLD---------FGLTGSTQYASAFSVTSLSQDG 93
 
Name Accession Description Interval E-value
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-434 2.50e-160

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 458.15  E-value: 2.50e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNaKTTAGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:PRK05682   2 SFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGTN-PTQVGSGVKVAGVAQQFSQGSITSTGNSLD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  81 LRVSGTGFFAVSKDRMVpeinELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEV--LSYAPKPLDIPAEFGKPKQTE 158
Cdd:PRK05682  81 LAISGNGFFVVSNGGNG----FYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPptVGAGLVPLNIPTTALAPKATT 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 159 NIEVGVNLPANGDLKDPaafnfkDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMSDENGEKPVNitgg 238
Cdd:PRK05682 157 SGTFQGNLPSTAAFDPT------DPDTYNHSTSLTVYDSLGNSHTLDVYFVK--TGDNTWEVYVYDDGKPVSTTAT---- 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 239 datnaqGHVGHTMKFNNDGTLASlnngqpiNSEALGAGANPIDLNGADPTQVLKFGLDSSTQFAAPFELTKFDEDGATTG 318
Cdd:PRK05682 225 ------GTGTTTLTFDSNGALTT-------TTSPTTFNITGGATNGADGGQTITLDLSGSTQYASGFTVSATTQDGYAPG 291

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 319 FLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNGSLEQSNID 398
Cdd:PRK05682 292 TLTGYSIDDDGTVTAVYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVD 371

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 515644230 399 MTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:PRK05682 372 LSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNLR 407
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-434 1.57e-141

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 410.72  E-value: 1.57e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   1 MS-YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTAGGGAQASQVAQQFHEGSSIYTNNPM 79
Cdd:COG1749    3 MSfNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLSGANPTQVGGGVRVASVAQIFTQGSLQSTGNAL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  80 DLRVSGTGFFAVSKDrmvPEINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNsGEVL--SYAPKPLDIPAEFGKPKQT 157
Cdd:COG1749   83 DLAISGNGFFVVSDS---GGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADAD-GTIPdtGGGLEPIQIPTGQLPAKAT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 158 ENIEVGVNLPANGDLKDpAAFNFKDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMSDENgekpvnITG 237
Cdd:COG1749  159 TKVTLGGNLPADATVPT-APFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTK--TGANTWTVYVTVDGAD------VTG 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 238 GDATNAQGhvghTMKFNNDGTLASLNNGQPINSealgaganPIDLNGADPTQVlKFGLDSSTQFAAPFELTKFDEDGATT 317
Cdd:COG1749  230 GTGATGTG----TLTFDSNGKLTSPTSGGPGTL--------TLTVNGAAPQTI-TLDLSGLTQYASSFSVTSLTQDGYAA 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 318 GFLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNGSLEQSNI 397
Cdd:COG1749  297 GTLTGVSIDDDGVVTATYSNGQTRPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNV 376

                        410       420       430
                 ....*....|....*....|....*....|....*..
gi 515644230 398 DMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:COG1749  377 DLAEELVNMIVAQRAYQANAKVITTSDEMLQTLVNLK 413
flgE PRK06803
flagellar basal body protein FlaE;
1-432 5.22e-89

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 275.88  E-value: 5.22e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   1 MSY-VALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSlftnakttAGGGAQASQVAQQFHEGSSI-YTNNP 78
Cdd:PRK06803   1 MSFnIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGG--------QPGGVEVSSVSQNFSKDGSLtYTGRG 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  79 MDLRVSGTGFFaVSKDRMVPEIneLTRNGAFHLNKDNYMVTANDEFLLGYDVDPN----SGEVLSYAPKPLDIPAefgkp 154
Cdd:PRK06803  73 LDLAISGGGFF-VLKESDGDTA--YTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAgnlqTGNVSDLQVQTASLPA----- 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 155 KQTENIEVGVNLPANGDLKDPAA--FNFKDADTYNRATSSTVYDSMGQSYKLTTYYLKdqTQPNTWQTYYTMSdengekp 232
Cdd:PRK06803 145 KATDQLDFVANLDASVTPIDPSVspFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVK--TATNEWAVHYTVD------- 215

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 233 vnitGGDATNaqgHVGHTMKFNNDGTLASLNNGQ-PINSEALGAGANPIDLNgadptqvlkFGLDSSTQFAAPFELTKFD 311
Cdd:PRK06803 216 ----GGDVTP---PLGHTLQFDDTGALIPGKGSTiNLHGTFNPAGASDYDID---------IDYTGSTQYAADFNNSRNK 279

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 312 EDGATTGFLTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNGS 391
Cdd:PRK06803 280 SNGYTSGELNGVRIEDNGMVYATYTNGQRQLQGQVVLANFANPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGA 359

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|.
gi 515644230 392 LEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQ 432
Cdd:PRK06803 360 LEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALFN 400
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-416 5.83e-51

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 171.67  E-value: 5.83e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230    1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNakTTAGGGAQASQVAQQFHEGSSIYTNNPMD 80
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGS--GQVGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   81 LRVSGTGFFAVSKDrmvPEINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPnsgevlsyapkpldipaefgkpkqteni 160
Cdd:TIGR03506  80 LAISGDGFFVVQTP---DGSEAYTRAGSFKLDADGYLVTSDGYPLLDWGGGP---------------------------- 128

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  161 evgVNLPANGdlkdpaafnfkdadtynratsstvydsmgqsyklttyylkdqtqpntwqtyytmsdengekpvnitggda 240
Cdd:TIGR03506 129 ---ITLPPDA---------------------------------------------------------------------- 135

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  241 tnaqghvghtmkfnndgtlaslnngqpinsealgaganpidlngadptqvlkfgldsstqfaapfeltkfdedgattgfl 320
Cdd:TIGR03506     --------------------------------------------------------------------------------

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  321 TKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNGSLEQSNIDMT 400
Cdd:TIGR03506 136 GSVSIGEDGTVSATYSNGQTVELGQIALANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLA 215

                         410
                  ....*....|....*.
gi 515644230  401 QELVDLISAQRNFQAN 416
Cdd:TIGR03506 216 EELVNMISAQRAYQAN 231
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
3-434 1.22e-36

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 134.94  E-value: 1.22e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTA-----------GGGAQASQVAQQFHEGS 71
Cdd:COG4786    2 YTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLYQLIRRPGAPSSqgtqtpvglqlGTGVRVAATQTDFTQGS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  72 SIYTNNPMDLRVSGTGFFAVskdrMVPEINE-LTRNGAFHLNKDNYMVTANdefllGYDVDPNSGEvlsyapkpldipae 150
Cdd:COG4786   82 LQQTGNPLDLAIEGDGFFQV----QTPDGETaYTRDGSFQLDADGQLVTSD-----GYPVLPENGP-------------- 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 151 fgkpkqtenievgVNLPANGdlkdpaafnfkdadtynratsstvydsmgqsyklttyylkdqtqpntwqtyytmsdenge 230
Cdd:COG4786  139 -------------ITIPEDA------------------------------------------------------------ 145

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 231 kpvnitggdatnaqghvghtmkfnndgtlaslnngqpinsealgaganpidlngadptqvlkfgldsstqfaapfeltkf 310
Cdd:COG4786      --------------------------------------------------------------------------------

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 311 dedgattgflTKIDFDEYGSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNG 390
Cdd:COG4786  146 ----------TSITISEDGTVSVTLADGDGQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQG 215

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 515644230 391 SLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:COG4786  216 YLEGSNVDVVEEMVDMIEAQRAYEANSKVIQTADEMLGKANNLR 259
flgE PRK12637
flagellar hook protein FlgE; Provisional
 5-434 3.72e-35

flagellar hook protein FlgE; Provisional


Pssm-ID: 183641 [Multi-domain]  Cd Length: 473  Bit Score: 135.65  E-value: 3.72e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   5 ALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSlftnaktTAGGGAQASQVAQQFHEGSSIYTNNPMDLRVS 84
Cdd:PRK12637   6 GLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASS-------RVGLGVKVSAINQRFTVGNISTTGGEYDMAID 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  85 G-TGFFavskdRMVPEINEL--TRNGAFHLNKDNYMVTANDEFLLGYdvdPNSGevLSYAPKPLDIPAEFGKPKQTENIE 161
Cdd:PRK12637  79 GgKGFF-----RLTDQSGGVfySRNGEFMVDKNFYIVNAQGFRLTGY---PAGG--VGAQPVDLQLPQGNIAPQATSTAG 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 162 VGVNLPANGDLKDP--------------AAFNFKDAD------------------------------------------- 184
Cdd:PRK12637 149 LQTNLNANAKVIDPndtpavdgtveldgTTYRFTNAGgtfawvapapldgtynggdiviaggavtgdlasqpgyqpykpl 228

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 185 ------------TYNRATSSTVYDSMGQSYKLTTYYLKDQT--QPNTWQTYYTMSDEngekPVNITGGdatnaqghVGHT 250
Cdd:PRK12637 229 vagipfdptnplSYTDQVPTTVYDSLGNSHQMIQYFAKRPAvgTESVYEVYYVLDGQ----PMQVNGG--------ASQT 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 251 MKFNNDGTLASLNNGQPINSEALGAGANPidlngADPTQVlKFGLDSSTQFAAPFElTKFDEDGATTGFLTKIDFDEYGS 330
Cdd:PRK12637 297 LNFDTAGNLLNQPPTAQVTFANPGGNAAP-----ADPLAI-TVSYNGVTQYGSDFA-PKVVQNGYSSGEFMGLSVGKDGS 369

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 331 VLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNGSLEQSNIDMTQELVDLISAQ 410
Cdd:PRK12637 370 LVAKYTNGETQTIGTLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQ 449

                        490       500
                 ....*....|....*....|....
gi 515644230 411 RNFQANSRSLEVHNQLQQNILQIR 434
Cdd:PRK12637 450 RTYQANAQTIKTQDEVMQVLMNMR 473
flgE PRK08425
flagellar hook protein FlgE; Validated
 189-434 2.75e-30

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 123.65  E-value: 2.75e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 189 ATSSTVYDSMGQSYKLTTYYLK---DQTQPNTWQTYYTMSDengekPVNITGGDATNAQGHVGHTMKFNNDGTLASLNng 265
Cdd:PRK08425 491 AASIDIYDSLGSKHTLRIEFYKsstTQDGGAEWNMIIIVPE-----PAEINGGSEGRPNNFEGGRLRFNNDGSLAGMN-- 563

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 266 qPINseaLGAGANpidlNGADPTQV--LKFGLDSS----TQFAAPFELTKFDEDGATTGFLTKIDFDEYGSVLGTYSNGE 339
Cdd:PRK08425 564 -PPT---LQFDPN----NGAAAPQRinLSFGTSGSfdglTSVDKISETYAIEQDGYTAGDLMDIRFDSDGTILGAFTNGR 635

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 340 NVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQANSRS 419
Cdd:PRK08425 636 TFALAQVALANFANNAGLQAEGGNVFSQTANSGQAVIGAAGTGGRGSISGSKLEMSNVDLSRSLTQLIVIQRGFQANSKT 715

                        250
                 ....*....|....*
gi 515644230 420 LEVHNQLQQNILQIR 434
Cdd:PRK08425 716 ITTSDQMLNTLLQLK 730
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 3-434 1.73e-22

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 95.88  E-value: 1.73e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230    3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGD-VYSSSLFTNAKTTA-----------GGGAQASQVAQQFHEG 70
Cdd:TIGR02488   3 WTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDlLYQTERQPGAQSSEqqtilpvgvqvGLGVRVVATQKLFTQG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   71 SSIYTNNPMDLRVSGTGFFAVskdrMVPE-INELTRNGAFHLNKDNYMVTANdefllGYDVDPNsgevlsyapkpldipa 149
Cdd:TIGR02488  83 SLQNTGNDLDLAIEGEGFFQV----LMPDgTTAYTRDGAFKINAEGQLVTSN-----GYPLQPE---------------- 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  150 efgkpkqtenievgVNLPANgdlkdpaafnfkdadtynrATSSTVydsmgqsyklttyylkdqtqpntwqtyytmsdeng 229
Cdd:TIGR02488 138 --------------ITIPEN-------------------ATSITV----------------------------------- 149

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  230 ekpvnitggdatnaqghvghtmkfNNDGTLASLNNGQPinsealgaganpidlngadptqvlkfgldsstqfaapfeltk 309
Cdd:TIGR02488 150 ------------------------GSDGEVSVRQGGQT------------------------------------------ 163

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  310 fdedgattgfltkidfdeygsvlgtysngENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINN 389
Cdd:TIGR02488 164 -----------------------------EPQEVGQITLATFINPAGLEAVGENLFRETPASGPPQIGTPGLDGFGKLRQ 214

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 515644230  390 GSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:TIGR02488 215 GFLEASNVNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQLL 259
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 3-133 3.90e-22

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 94.93  E-value: 3.90e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDV-YSSSLFTNAKTTA----------GGGAQASQVAQQFHEGS 71
Cdd:PRK12693   6 WIAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLlYQTIRQPGAQSSQnttlpsglqvGTGVRPVATQKIFTQGN 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 515644230  72 SIYTNNPMDLRVSGTGFFAVskdrMVPEINEL-TRNGAFHLNKDNYMVTANdefllGYDVDPN 133
Cdd:PRK12693  86 LQQTGNSLDVAIEGQGFFQV----QLPDGTIAyTRDGSFKLDQDGQLVTSG-----GYPLQPE 139
flgE PRK05841
flagellar hook protein FlgE; Validated
 5-420 2.19e-21

flagellar hook protein FlgE; Validated


Pssm-ID: 235620 [Multi-domain]  Cd Length: 603  Bit Score: 96.84  E-value: 2.19e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   5 ALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSL-FTNAKTTAGG----GAQASQVAQQFHEGSSIYTNNPM 79
Cdd:PRK05841   8 AYSGIKTHQFGLDSLSNNIANVNTLGYRSNIPEFKTLFSSHLdALNAKSVVANdrnyGVTGSSNAISNKDGEYKPSDGEF 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  80 DLRVSGTGFFAVSKDRMVP-EINE----------LTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEVLSYAPK----- 143
Cdd:PRK05841  88 HMAYQGKGWFVVGPNKNGSmTINKdgfskkqdnyFTRDGSFARDADGYLVNPEGYYVYGIDLGKIKDGTLNSTARdeadi 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 144 ---------PLDIPAE-FGKPKQTENIEVGVNLPANGDLKDPAAFNFK--------------------------DADTYN 187
Cdd:PRK05841 168 eklhgntlsPLQIPQDlTYQPVLTTKVGISVNLNPKDHLKGVQDFFLNdkgefikerflnqdinalanddnepiDAITNR 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 188 RATSSTVYDSmGQSYKLTTYYLKDQTQPNTWQTY----------------------------YTMSDEN-GEKPVNIT-G 237
Cdd:PRK05841 248 KLNITIQKED-GKKEDFVFTYGDAEKGENQFKTLgdlkkllkektgldlnlirsekgaksppLLLEIANpSQTPITFSlS 326

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 238 GDATNAQGHVGHTMKFNNDGTLAS------------------------------LNNGQPINSEALGA----------GA 277
Cdd:PRK05841 327 GGIADKLGLNANGMELKKGISRDSvaikipsysteveiydkagdkyllqseyymTNSGDPTSSPRKNQtwevksyivdPK 406

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 278 NPIDLNGADPTQVLKFGLDSSTQfAAPFELT-----------------------------KFDEDGATTGFLTKIDFDEY 328
Cdd:PRK05841 407 NKTPINTDPTWEIVGFDATHKMK-AAPMTLDfkgnkltysldksedhdssnlsyqdskllEASQDGKPRGILRDVRIDEN 485

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 329 GSVLGTYSNGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTND---------SGSKI--WGESNKGSFGSINNGSLEQSNI 397
Cdd:PRK05841 486 GVISLAFSNGVVEPMGRIGIAAFTNDQGLRKVGGNLFEMQEGtingenrplSGNPIlgWDEEGKLKFGKVRHKYLETSNV 565

                        570       580
                 ....*....|....*....|...
gi 515644230 398 DMTQELVDLISAQRNFQANSRSL 420
Cdd:PRK05841 566 DAGNALTNLILMQRGYSMNARAF 588
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 187-314 6.52e-18

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 78.60  E-value: 6.52e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  187 NRATSSTVYDSMGQSYKLTTYYLKDQTQPNTWQTYYTMSDENGekPVNITGGDATNAQGHVGHTMKFNNdgtlaslnngq 266
Cdd:pfam07559   1 NYSTSVTVYDSLGNSHTLTVYFVKTATGPNTWEVYVTVDGEVG--DGDGTAGTASTAGGLMTGTLTFDS----------- 67

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 515644230  267 pinsealgaganpIDLNgadptqvlkFGLDSSTQFAAPFELTKFDEDG 314
Cdd:pfam07559  68 -------------ITLD---------FGLTGSTQYASAFSVTSLSQDG 93
flgE_epsilon TIGR02489
flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar ...
 6-201 1.08e-16

flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the Proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.


Pssm-ID: 131542 [Multi-domain]  Cd Length: 719  Bit Score: 82.30  E-value: 1.08e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230    6 LSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTAGGGAQ----------ASQVAQQFHEGSSIYT 75
Cdd:TIGR02489   9 VSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQTVKIATSPYDGLGGQndlsiglgvsISSTTKIFSQGSVQTT 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   76 NNPMDLRVSGTGFFAVSKDRMVpeINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEVLSYApKPLDIPAEFGKPK 155
Cdd:TIGR02489  89 NSKTDVAINGDGFFIVSDDGGL--TNYYTRDGAFKFDAYGNFVNNSGYIVQGWNRPLEAAESGTMS-DWDDQTVDSTRPP 165

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 515644230  156 QTENIEVGVNLPANGDLKDPAAFNFKDADTYNRATSSTVYDSMGQS 201
Cdd:TIGR02489 166 QNIFIDPGMVIPAAATTEVALKANLNAGLNIDTSSNLYALDSTHQT 211
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 3-129 2.56e-16

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 78.64  E-value: 2.56e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTAG-GGAQASQVA--------QQFH-EGSS 72
Cdd:PRK12636   6 YSGISGMKNFQTKLDVIGNNIANVNTYGFKKSRVTFKDMVSQTISGASGPTANrGGVNSKQVGlgsqlgaiDTIHtQGSL 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 515644230  73 IYTNNPMDLRVSGTGFFAV-SKDRMVpeineLTRNGAFHLNKDNYMVTANDEFLLGYD 129
Cdd:PRK12636  86 QTTGRPLDLAISGDGFFRVgDGDNTA-----YTRAGNFYLDNEGNIVNADGLYLLGMN 138
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 4-132 1.53e-15

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 76.04  E-value: 1.53e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   4 VALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDV-YSSSLFTNAKTTAGGGA-----------QASQVAQQFHEGS 71
Cdd:PRK12692   6 IAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLlYQAERQQGVPNQAGQEAvpegamlglgvRAAAIRNLHRQGS 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 515644230  72 SIYTNNPMDLRVSGTGFFAVSKDRmvPEINeLTRNGAFHLNKDNYMVTANdefllGYDVDP 132
Cdd:PRK12692  86 LAQTGNQLDLAVNGRGYFQVTSPN--GEIQ-YTRAGSFNKNAAGQLVTME-----GYAVDP 138
flgE PRK08425
flagellar hook protein FlgE; Validated
 7-142 2.15e-15

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 78.59  E-value: 2.15e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   7 SGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYS--SSLFTNAKTTAGG--------GAQASQVAQQFHEGSSIYTN 76
Cdd:PRK08425  10 SGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSqtKLIATAPKGGLGGqndmqiglGVGVSSTTKIFSQGSIQNTD 89

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 515644230  77 NPMDLRVSGTGFFAVSKDRMVpeINELTRNGAFHLNKDNYMVTANDEFLLGYDVDPNSGEVLSYAP 142
Cdd:PRK08425  90 KNTDLAIQGDGFFIVSPDGGT--TRNYTRDGDFKFDAQGNFVNNGGYVVQGWVSDTDTGTIDSTGP 153
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 3-133 1.48e-13

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 70.22  E-value: 1.48e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGD-VYSSSLFTNAKTTA----------GGGAQASQVAQQFHEGS 71
Cdd:PRK12816   6 WTAASGMNAQQFNIDTIANNLANVNTTGFKKIRAEFEDlIYQTQRRAGTPATEdtvtplgvqvGHGVKVAATQRLFEQGS 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515644230  72 SIYTNNPMDLRVSGTGFFAVskdRMVPEINELTRNGAFHLNKDNYMVTANdefllGYDVDPN 133
Cdd:PRK12816  86 LQATGNKLDVAIEGEGFFKI---LMPDGTYAYTRDGSFKIDANGQLVTSN-----GYRLLPE 139
flgF PRK12690
flagellar hook-basal body complex protein;
2-149 6.63e-13

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 68.17  E-value: 6.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   2 SYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDvYSSSLFTNAKTTAGGGAQASQVaqQFHEGSSIYTNNPMDL 81
Cdd:PRK12690   5 GYTTLTRQSGLMREMQVVANNIANASTTGFRREGLVFSE-YVKSLDSGEASLSMARASGRQT--DLEQGGLTQTGGQFDF 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515644230  82 RVSGTGFFAVSkdrmVPEINELTRNGAFhlnkdnymvTANDEFLLgydVDPNSGEVLSYAPKPLDIPA 149
Cdd:PRK12690  82 AIEGEGFFMVE----TPQGERLTRAGSF---------TPNAEGEL---VDPDGNRLLDAGGAPIFIPP 133
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 3-127 2.66e-12

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 66.65  E-value: 2.66e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKE---SRAEFGDVysssLFTNAKTTAGG------------GAQASQVAQQF 67
Cdd:PRK12818   6 YTAVSGMITLEAKQDVITNNLANVNTVGYKSdnlAFKSFEDV----LIENYDKKVGNknvkniigglsmGSKIDEVNTLF 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  68 HEGSSIYTNNPMDLRVSGTGFFAVSKDrmvPEINELTRNGAFHLNKDNYMVTANDEFLLG 127
Cdd:PRK12818  82 TQGIIKSTDKPTDFAIQGRGFFTVERN---AGNNYYTRDGHFHVDTQGYLVNDSGYYVLG 138
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 3-127 3.56e-12

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 66.03  E-value: 3.56e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAE------FGDVYSSSLFtnakttagggAQASQVAQQFHEGSSIYTN 76
Cdd:PRK12640   6 YTAMSGASQNLNQQAVVANNLANASTPGFRADLAQaravpvFGEGLPTRVF----------ALASTPGADFSPGPLQTTG 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 515644230  77 NPMDLRVSGTGFFAVskdrMVPEINE-LTRNGAFHLNKDNYMVTANDEFLLG 127
Cdd:PRK12640  76 RPLDVALQGDGWLAV----QAPDGSEaYTRNGSLQVDANGQLRTANGLPVLG 123
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 385-433 8.74e-12

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 60.36  E-value: 8.74e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 515644230  385 GSINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 433
Cdd:pfam06429  26 GRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgF PRK12689
flagellar basal-body rod protein FlgF;
4-127 4.48e-11

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 62.84  E-value: 4.48e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   4 VALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSlfTNAKTTAGGGAQASQVAQQ-----FHEGSSIYTNNP 78
Cdd:PRK12689   7 VGLSRQMALERQLDVVANNVANVNTNGFKARSSLFQEYLMPG--AHEDNFQRPDRRVSYVQDRgtpldLSQGPLEQTKNP 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 515644230  79 MDLRVSGTGFFAVSkdrmVPEINELTRNGAFHLNKDNYMVTANDEFLLG 127
Cdd:PRK12689  85 LDVAIDGDAFLAVQ----TPQGERYTRDGALEINAQGQLVTSDGYPVLG 129
flgF PRK12642
flagellar basal-body rod protein FlgF;
3-137 9.33e-11

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 61.60  E-value: 9.33e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLFTNAKTTAGGGAQASQVAqqfheGSSIYTNNPMDLR 82
Cdd:PRK12642   6 YVALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTVVSDTASKKVAFVSQGKSYLSTEA-----GPLTKTGNPLDFA 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515644230  83 VSGTGFFAVSkdrmVPEINELTRNGAFHLNKDNYMVTANdefllGYDV----------DPNSGEV 137
Cdd:PRK12642  81 VKGDAWFSFD----TPAGQVYTRDGRFTMTSTGELVSVT-----GYPVldaggapiqlNPGGGEP 136
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 322-414 1.05e-10

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 58.02  E-value: 1.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  322 KIDFDEYGSVlgtYSNGENVmlGRVGLVRVPNEQGLDKKGGTQWDSTNDsgskiwGESNKGSFGSINNGSLEQSNIDMTQ 401
Cdd:TIGR02490   8 DITIGADGTI---SQDGEEV--GRLGLVNFDNPNQLQREGDGLFRATGG------GPAPADSNVRVVQGYLEGSNVNAVS 76

                          90
                  ....*....|...
gi 515644230  402 ELVDLISAQRNFQ 414
Cdd:TIGR02490  77 EMVDMIEAQRAYE 89
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 337-433 6.32e-10

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 59.44  E-value: 6.32e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230 337 NGENVMLGRVGLVRVPNEQGLDKKGGTQWDSTNDSGSKIWGESNKGSFGSINNGSLEQSNIDMTQELVDLISAQRNFQAN 416
Cdd:PRK12816 166 DNDPIELGQIELYRFVNPAGLSAIGKNLFKETIASGQEIPGIPGSEGFGRVLQGFLEMSNVSIVEEMVTMIVAQRAYEIN 245

                         90
                 ....*....|....*..
gi 515644230 417 SRSLevhnQLQQNILQI 433
Cdd:PRK12816 246 SKAI----QTSDNMLGT 258
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 7-146 6.14e-09

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 56.62  E-value: 6.14e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   7 SGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSLF-----TNAKTTA--GGGAQASQVAQQFHEGSSIYTNNPM 79
Cdd:PRK12817  10 SGMNAQQEKLDSISNNLANVNTTGYKREDVSFSDLVYETLDrkgypTNDKPEIitGTGVKATNWIRDNQQGNLLTTGNKT 89

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515644230  80 DLRVSGTGFFAVSKdrmvPEINEL-TRNGAFHLNKDNYMVTANDEFLlgyDVDPNSGEVLSYAPKPLD 146
Cdd:PRK12817  90 DLAIDGEGFFRVIM----ADGTYAyTRAGNFNIDSNGMLVDDNGNRL---EIQLEAGVGINNRNTGFD 150
flgG PRK12819
flagellar basal-body rod protein FlgG;
3-127 5.33e-07

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 50.65  E-value: 5.33e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKesraefGDVYSSSLFTNAKTTAGGGAQASQVAQ------------QFHEG 70
Cdd:PRK12819   5 YIGSMGMMNYMQRINVHSNNVANAQTTGFK------AENMTSKVFDVQDTYRRGDGAVTNIGSvdyavvpaathvNLVQG 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 515644230  71 SSIYTNNPMDLRVS-----GTGFFAVSKDRMVpeinELTRNGAFHLNKDNYMVTANDEFLLG 127
Cdd:PRK12819  79 NIQMTNSDTDFFLDdgpagTSSFFVTSKNGET----FLTRDGSFTLNSDRYLQTASGAFVMG 136
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
3-69 8.31e-07

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 51.03  E-value: 8.31e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515644230   3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGdvySSSLFTNAKTTAGGGAQASQVAQQFHE 69
Cdd:COG1256    7 NIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLS---AAGPTATGAGQVGTGVRVTGIRRIRDE 70
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
389-433 1.65e-06

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 47.03  E-value: 1.65e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 515644230 389 NGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 433
Cdd:COG1558   89 DGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEI 133
Flg_bb_rod pfam00460
Flagella basal body rod protein;
3-31 3.31e-06

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 43.32  E-value: 3.31e-06
                          10        20
                  ....*....|....*....|....*....
gi 515644230    3 YVALSGLSAAQLDLNTTSNNIANANTFGF 31
Cdd:pfam00460   2 YTAVSALNAQQIRLDVIANNIANANTPGY 30
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 386-434 5.88e-06

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 47.38  E-value: 5.88e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 515644230 386 SINNGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQIR 434
Cdd:PRK12817 211 DILQGYLENSNVDLGKEMTDMIITQRAFQLSSKGIKTADEMWGIINNMR 259
flgK PRK08147
flagellar hook-associated protein FlgK; Validated
 5-69 4.69e-05

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236165 [Multi-domain]  Cd Length: 547  Bit Score: 45.44  E-value: 4.69e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515644230   5 ALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGDVYSSSlftnaktTAGG----GAQASQVAQQFHE 69
Cdd:PRK08147   8 AMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQAGSTL-------TAGGwignGVYVSGVQREYDA 69
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 4-42 5.14e-05

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 42.89  E-value: 5.14e-05
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 515644230   4 VALSGLSAAQLDLNTTSNNIANANTfgfkeSRAEFGDVY 42
Cdd:PRK05681   9 IAGSGLSAQSQRLNVISSNIANADS-----TAAPDGDPY 42
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
4-65 6.34e-05

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 42.41  E-value: 6.34e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 515644230   4 VALSGLSAAQLDLNTTSNNIANANTfgfkeSRAEFGDVYSSS--LFTNAKTTAGGGAQASQVAQ 65
Cdd:COG1558    9 IAGSGLTAQRLRLNVIASNLANANS-----TRTSDGGPYRRKqvVFEAVLDRAGSGAAGVRVAG 67
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 389-433 8.72e-05

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 42.12  E-value: 8.72e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 515644230 389 NGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 433
Cdd:PRK05681  88 KGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTI 132
flgK PRK07191
flagellar hook-associated protein FlgK; Validated
 1-63 1.18e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180871 [Multi-domain]  Cd Length: 456  Bit Score: 44.04  E-value: 1.18e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 515644230   1 MSYVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEFGdvySSSLFTNAKTTAGGGAQASQV 63
Cdd:PRK07191   3 FIRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQS---AIGADGQGGVNAGNGVNVDGI 62
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 389-433 2.67e-04

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 40.80  E-value: 2.67e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 515644230  389 NGSLEQSNIDMTQELVDLISAQRNFQANSRSLEVHNQLQQNILQI 433
Cdd:TIGR01395  89 EGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEI 133
flgK_ends TIGR02492
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ...
 3-38 2.74e-04

flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274162 [Multi-domain]  Cd Length: 323  Bit Score: 42.72  E-value: 2.74e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 515644230    3 YVALSGLSAAQLDLNTTSNNIANANTFGFKESRAEF 38
Cdd:TIGR02492   4 NIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVL 39
flgK PRK06945
flagellar hook-associated protein FlgK; Validated
 4-69 3.49e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235895 [Multi-domain]  Cd Length: 651  Bit Score: 43.08  E-value: 3.49e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 515644230   4 VALSGLSAAQLDLNTTSNNIANANTFGFKESR---AEFGDVYSSSLFTnakttaGGGAQASQVAQQFHE 69
Cdd:PRK06945   7 IGLSGLNAAQWGLTTTGHNISNAATPGYSRQRvvqAEAGGQYTGSGYL------GQGVNVVTVKRQYSQ 69
flgF PRK12641
flagellar basal-body rod protein FlgF;
20-125 5.29e-04

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 41.47  E-value: 5.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230  20 SNNIANANTFGFKESRAEFgdvyssSLFTNAKTTAGGGAQASQVAQQFHEGSSIYTNNPMDLRVSGTGFFAVSKDrmvPE 99
Cdd:PRK12641  23 ANNLANISTTGFKEKFILA------IQNHNVKNLYNSDKKITKEYYNLSPGTLRYTGRNLDLFIKDNGWLTIKDT---NG 93

                         90       100
                 ....*....|....*....|....*.
gi 515644230 100 INELTRNGAFHLNKDNYMVTANDEFL 125
Cdd:PRK12641  94 QEAYTKNGHLKINSKRKLTVQNNEVI 119
flgK PRK07739
flagellar hook-associated protein FlgK; Validated
 5-38 5.65e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236084 [Multi-domain]  Cd Length: 507  Bit Score: 42.31  E-value: 5.65e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 515644230   5 ALSGLSAAQLDLNTTSNNIANANTFGFKESRAEF 38
Cdd:PRK07739  11 ARRGLFAQQAALYVTGHNIANANTPGYTRQRVNL 44
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 4-64 5.81e-04

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 40.03  E-value: 5.81e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515644230    4 VALSGLSAAQLDLNTTSNNIANANTFgfkesRAEFGD-------VYSSSLFTnaKTTAGGGAQASQVA 64
Cdd:TIGR01395   6 VSASALSAQRVRMNVVSSNLANADST-----RTPAGDpyrrrrpVFEAELFQ--DRASRPGGSGVKVA 66
flgK PRK05683
flagellar hook-associated protein FlgK; Validated
 4-31 7.06e-04

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 235558 [Multi-domain]  Cd Length: 676  Bit Score: 42.02  E-value: 7.06e-04
                         10        20
                 ....*....|....*....|....*...
gi 515644230   4 VALSGLSAAQLDLNTTSNNIANANTFGF 31
Cdd:PRK05683   6 IGLSGLGASQTALAVTGNNIANVDTAGY 33
flgG PRK12819
flagellar basal-body rod protein FlgG;
385-418 9.14e-04

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 40.63  E-value: 9.14e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 515644230 385 GSINNGSLEQSNIDMTQELVDLISAQRNFQANSR 418
Cdd:PRK12819 206 GIVKNGMLENSNVDMTKEMADLMTDQRMIQASQR 239
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-150 3.24e-03

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 38.67  E-value: 3.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515644230   1 MSYVALSGLSAAQLDLN---TTSNNIANANTFGFKESRAEFGDVY--SSSLFTNAK-TTAGGGAQASQvaqqfheGSSIY 74
Cdd:PRK12643   1 MDHAIYTAMGAARQSLElqaVTANNLANASTPGFRAQLAAMRAVPidGPSLATRTMvTTSTPGVDISQ-------GTMNF 73

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 515644230  75 TNNPMDLRVSGTGFFAVSkdrmVPEINE-LTRNGafhlnkdNYMVTANDEFLL-GYDVDPNSGevlsyapkPLDIPAE 150
Cdd:PRK12643  74 SGRPLDVALQQDGYLAVQ----LPDGSEaYTRNG-------NIQISANGQMTVqGYPLMGDNG--------PIDVPPQ 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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