|
Name |
Accession |
Description |
Interval |
E-value |
| Tar |
COG0840 |
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms]; |
15-537 |
1.92e-84 |
|
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
Pssm-ID: 440602 [Multi-domain] Cd Length: 533 Bit Score: 271.89 E-value: 1.92e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 15 SILAVLVTLVGIVWIEVIGAHKSADEIRMDDVPGTVTYLVLIDEAGDVYRDALGAITQADNALNDYRTNKNEFAQAIKEA 94
Cdd:COG0840 12 LALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVLLALLLALLLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 95 KRLESRGSEDHRRIERIEDLMGRFTQEFESKLVPMINDESALLSNIQQLRSLYESNLIPVENLLDQASASERADTEQSLL 174
Cdd:COG0840 92 LLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAAAALAALLEAAA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 175 VLTDSFTTIERTIMVLSAIAIVFGCVIAFVLSSSITNRLTRVEQVARRVANGDLTAgDIVDDSGDELADLATSINQMQKS 254
Cdd:COG0840 172 LALAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTV-RIDVDSKDEIGQLADAFNRMIEN 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 255 LVDLLGSISSVTNQVQSVTGELSSISQDIVSGASAQADKANLIATAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRN 334
Cdd:COG0840 251 LRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGGE 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 335 VIVEMVASIQQVSTQMSDMSVQMNTLGSHGEQIGSVIKVIEDIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAE 414
Cdd:COG0840 331 VVEEAVEGIEEIRESVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAE 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 415 RTTKATQEVSGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIA 494
Cdd:COG0840 411 RSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAAASEEQSAGTEEVN 490
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 515657488 495 ADITAISDISEQSLQLATRSSENTSGLNAKVAELEALVGKFKL 537
Cdd:COG0840 491 QAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRFKL 533
|
|
| MA |
smart00283 |
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ... |
275-536 |
1.13e-56 |
|
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Pssm-ID: 214599 [Multi-domain] Cd Length: 262 Bit Score: 190.19 E-value: 1.13e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 275 ELSSISQDIVSGASAQADKANLIATAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRNVIVEMVASIQQVSTQMSDMS 354
Cdd:smart00283 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 355 VQMNTLGSHGEQIGSVIKVIEDIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIQSIQSGT 434
Cdd:smart00283 81 SAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEET 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 435 QEAVTYTQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQSLQLATRS 514
Cdd:smart00283 161 NEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEI 240
|
250 260
....*....|....*....|..
gi 515657488 515 SENTSGLNAKVAELEALVGKFK 536
Cdd:smart00283 241 SAAAEELSGLAEELDELVERFK 262
|
|
| MCP_signal |
cd11386 |
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ... |
302-501 |
8.07e-47 |
|
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.
Pssm-ID: 206779 [Multi-domain] Cd Length: 200 Bit Score: 162.02 E-value: 8.07e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 302 EELSLTISEVAQQGTSTYEEARRSETSAEDGRNVIVEMVASIQQVSTQMSDMSVQMNTLGSHGEQIGSVIKVIEDIAGQT 381
Cdd:cd11386 1 EELSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 382 NLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSSGAVSA 461
Cdd:cd11386 81 NLLALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRA 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 515657488 462 LEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAIS 501
Cdd:cd11386 161 FEEIVASVEEVADGIQEISAATQEQSASTQEIAAAVEEIA 200
|
|
| PRK15048 |
PRK15048 |
methyl-accepting chemotaxis protein II; Provisional |
189-538 |
1.43e-35 |
|
methyl-accepting chemotaxis protein II; Provisional
Pssm-ID: 185008 [Multi-domain] Cd Length: 553 Bit Score: 140.14 E-value: 1.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 189 VLSAIAIVFGCVIAFVLSSSITNRLTRVEQVARRVANGDLTAGDIVDDSgDELADLATSINQMQKSLVDLLGSISSVTNQ 268
Cdd:PRK15048 196 VIALVVVLILLVAWYGIRRMLLTPLAKIIAHIREIAGGNLANTLTIDGR-SEMGDLAQSVSHMQRSLTDTVTHVREGSDA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 269 VQSVTGELSSISQDIVSGASAQADKANLIATAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRNVIVEMVASIQQVSt 348
Cdd:PRK15048 275 IYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIA- 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 349 qmsdmsvqmntlgSHGEQIGSVIKVIEDIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIq 428
Cdd:PRK15048 354 -------------DSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALI- 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 429 siqsgtqeavtytQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQSL 508
Cdd:PRK15048 420 -------------EDSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNA 486
|
330 340 350
....*....|....*....|....*....|
gi 515657488 509 QLATRSSENTSGLNAKVAELEALVGKFKLA 538
Cdd:PRK15048 487 SLVQESAAAAAALEEQASRLTQAVSAFRLA 516
|
|
| MCPsignal |
pfam00015 |
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ... |
348-504 |
2.28e-34 |
|
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.
Pssm-ID: 333767 [Multi-domain] Cd Length: 172 Bit Score: 127.55 E-value: 2.28e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 348 TQMSDMSVQMNTLGSHGEQIGSVIKVIEDIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGII 427
Cdd:pfam00015 16 KEVANVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAERSAQAAKEIEALI 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515657488 428 QSIQSGTQEAVTYTQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDIS 504
Cdd:pfam00015 96 IEIQKQTNDSTASIESTRQRVEVGSTIVESTGEALKEIVDAVAEIADIVQEIAAASDEQSAGIDQVNQAVARMDQVT 172
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-506 |
4.53e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 56 IDEAGDVYRDALGAITQADNALNDYRtnkNEFAQAIKEAKRLESRGSEDHRRIERIEDLMGRFTQEFES----------- 124
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQLETLR---SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllkkleeaelk 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 125 --------------KLVPMINDESALLSNIQQLRSLYESNLIPVENLLDQASAseRADTEQSLLVLTDSFTTIERTIM-V 189
Cdd:TIGR02168 437 elqaeleeleeeleELQEELERLEEALEELREELEEAEQALDAAERELAQLQA--RLDSLERLQENLEGFSEGVKALLkN 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 190 LSAIAIVFGCV-------------IAFVLSSSITNRLTRVEQVARR-------VANGDLT--AGDIVDDSGDE------- 240
Cdd:TIGR02168 515 QSGLSGILGVLselisvdegyeaaIEAALGGRLQAVVVENLNAAKKaiaflkqNELGRVTflPLDSIKGTEIQgndreil 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 241 ---------LADLATSINQMQKSLVDLLG------SISSVTNQVQSVTGELSSISQD--------IVSGASAQADkANLI 297
Cdd:TIGR02168 595 kniegflgvAKDLVKFDPKLRKALSYLLGgvlvvdDLDNALELAKKLRPGYRIVTLDgdlvrpggVITGGSAKTN-SSIL 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 298 ATAAE--ELSLTISEVAQQGTSTYEEARRSETSAEDGRNVIVEMVASIQQVSTQMSDMSVQmntLGSHGEQIGSVIKVIE 375
Cdd:TIGR02168 674 ERRREieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD---LARLEAEVEQLEERIA 750
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 376 DIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIQSIQSgTQEAVTYTQDNCRLVEIGVEQS 455
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE-LRAELTLLNEEAANLRERLESL 829
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 515657488 456 SGAVSALEAivsgagNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQ 506
Cdd:TIGR02168 830 ERRIAATER------RLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Tar |
COG0840 |
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms]; |
15-537 |
1.92e-84 |
|
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
Pssm-ID: 440602 [Multi-domain] Cd Length: 533 Bit Score: 271.89 E-value: 1.92e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 15 SILAVLVTLVGIVWIEVIGAHKSADEIRMDDVPGTVTYLVLIDEAGDVYRDALGAITQADNALNDYRTNKNEFAQAIKEA 94
Cdd:COG0840 12 LALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVLLALLLALLLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 95 KRLESRGSEDHRRIERIEDLMGRFTQEFESKLVPMINDESALLSNIQQLRSLYESNLIPVENLLDQASASERADTEQSLL 174
Cdd:COG0840 92 LLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAAAALAALLEAAA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 175 VLTDSFTTIERTIMVLSAIAIVFGCVIAFVLSSSITNRLTRVEQVARRVANGDLTAgDIVDDSGDELADLATSINQMQKS 254
Cdd:COG0840 172 LALAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTV-RIDVDSKDEIGQLADAFNRMIEN 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 255 LVDLLGSISSVTNQVQSVTGELSSISQDIVSGASAQADKANLIATAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRN 334
Cdd:COG0840 251 LRELVGQVRESAEQVASASEELAASAEELAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGGE 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 335 VIVEMVASIQQVSTQMSDMSVQMNTLGSHGEQIGSVIKVIEDIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAE 414
Cdd:COG0840 331 VVEEAVEGIEEIRESVEETAETIEELGESSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAE 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 415 RTTKATQEVSGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIA 494
Cdd:COG0840 411 RSAEATKEIEELIEEIQSETEEAVEAMEEGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAAASEEQSAGTEEVN 490
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 515657488 495 ADITAISDISEQSLQLATRSSENTSGLNAKVAELEALVGKFKL 537
Cdd:COG0840 491 QAIEQIAAAAQENAASVEEVAAAAEELAELAEELQELVSRFKL 533
|
|
| MA |
smart00283 |
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ... |
275-536 |
1.13e-56 |
|
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Pssm-ID: 214599 [Multi-domain] Cd Length: 262 Bit Score: 190.19 E-value: 1.13e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 275 ELSSISQDIVSGASAQADKANLIATAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRNVIVEMVASIQQVSTQMSDMS 354
Cdd:smart00283 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 355 VQMNTLGSHGEQIGSVIKVIEDIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIQSIQSGT 434
Cdd:smart00283 81 SAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEET 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 435 QEAVTYTQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQSLQLATRS 514
Cdd:smart00283 161 NEAVAAMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEI 240
|
250 260
....*....|....*....|..
gi 515657488 515 SENTSGLNAKVAELEALVGKFK 536
Cdd:smart00283 241 SAAAEELSGLAEELDELVERFK 262
|
|
| MCP_signal |
cd11386 |
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ... |
302-501 |
8.07e-47 |
|
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.
Pssm-ID: 206779 [Multi-domain] Cd Length: 200 Bit Score: 162.02 E-value: 8.07e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 302 EELSLTISEVAQQGTSTYEEARRSETSAEDGRNVIVEMVASIQQVSTQMSDMSVQMNTLGSHGEQIGSVIKVIEDIAGQT 381
Cdd:cd11386 1 EELSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 382 NLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSSGAVSA 461
Cdd:cd11386 81 NLLALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRA 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 515657488 462 LEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAIS 501
Cdd:cd11386 161 FEEIVASVEEVADGIQEISAATQEQSASTQEIAAAVEEIA 200
|
|
| PRK15048 |
PRK15048 |
methyl-accepting chemotaxis protein II; Provisional |
189-538 |
1.43e-35 |
|
methyl-accepting chemotaxis protein II; Provisional
Pssm-ID: 185008 [Multi-domain] Cd Length: 553 Bit Score: 140.14 E-value: 1.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 189 VLSAIAIVFGCVIAFVLSSSITNRLTRVEQVARRVANGDLTAGDIVDDSgDELADLATSINQMQKSLVDLLGSISSVTNQ 268
Cdd:PRK15048 196 VIALVVVLILLVAWYGIRRMLLTPLAKIIAHIREIAGGNLANTLTIDGR-SEMGDLAQSVSHMQRSLTDTVTHVREGSDA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 269 VQSVTGELSSISQDIVSGASAQADKANLIATAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRNVIVEMVASIQQVSt 348
Cdd:PRK15048 275 IYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIA- 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 349 qmsdmsvqmntlgSHGEQIGSVIKVIEDIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIq 428
Cdd:PRK15048 354 -------------DSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALI- 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 429 siqsgtqeavtytQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQSL 508
Cdd:PRK15048 420 -------------EDSVSRVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNA 486
|
330 340 350
....*....|....*....|....*....|
gi 515657488 509 QLATRSSENTSGLNAKVAELEALVGKFKLA 538
Cdd:PRK15048 487 SLVQESAAAAAALEEQASRLTQAVSAFRLA 516
|
|
| PRK15041 |
PRK15041 |
methyl-accepting chemotaxis protein; |
174-537 |
9.33e-35 |
|
methyl-accepting chemotaxis protein;
Pssm-ID: 185001 [Multi-domain] Cd Length: 554 Bit Score: 137.78 E-value: 9.33e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 174 LVLTDSFTTIERTIMVLSAIAIVFGCVIA---FVLSSSITNRLTRVEQVARRVANGDLTAGDIVDDSgDELADLATSINQ 250
Cdd:PRK15041 180 IAVSDNNASYSQAMWILVGVMIVVLAVIFavwFGIKASLVAPMNRLIDSIRHIAGGDLVKPIEVDGS-NEMGQLAESLRH 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 251 MQKSLVDLLGSISSVTNQVQSVTGELSSISQDIVSGASAQADKANLIATAAEELSLTISEVAQQGTSTYEEARRSETSAE 330
Cdd:PRK15041 259 MQGELMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 331 DGRNVIVEMVASIQQVSTQmsdmsvqmntlgshGEQIGSVIKVIEDIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVR 410
Cdd:PRK15041 339 RGGKVVDNVVQTMRDISTS--------------SQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVR 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 411 ALAERTTKATQEVSGIIqsiqsgtqeavtytQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSMVNSIATAAEEQTAVT 490
Cdd:PRK15041 405 NLAQRSAQAAREIKSLI--------------EDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGI 470
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 515657488 491 KEIAADITAISDISEQSLQLATRSSENTSGLNAKVAELEALVGKFKL 537
Cdd:PRK15041 471 DQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRI 517
|
|
| MCPsignal |
pfam00015 |
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ... |
348-504 |
2.28e-34 |
|
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.
Pssm-ID: 333767 [Multi-domain] Cd Length: 172 Bit Score: 127.55 E-value: 2.28e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 348 TQMSDMSVQMNTLGSHGEQIGSVIKVIEDIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGII 427
Cdd:pfam00015 16 KEVANVVGQMEQIAQSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAERSAQAAKEIEALI 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 515657488 428 QSIQSGTQEAVTYTQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDIS 504
Cdd:pfam00015 96 IEIQKQTNDSTASIESTRQRVEVGSTIVESTGEALKEIVDAVAEIADIVQEIAAASDEQSAGIDQVNQAVARMDQVT 172
|
|
| PRK09793 |
PRK09793 |
methyl-accepting chemotaxis protein IV; |
223-537 |
7.39e-32 |
|
methyl-accepting chemotaxis protein IV;
Pssm-ID: 182079 [Multi-domain] Cd Length: 533 Bit Score: 129.04 E-value: 7.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 223 VANGDLtAGDIVDDSGDELADLATSINQMQKSLVDLLGSISSVTNQVQSVTGELSSISQDIVSGASAQADKANLIATAAE 302
Cdd:PRK09793 228 IAAGNL-ARPIAVYGRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASME 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 303 ELSLTISEVAQQGTSTYEEARRSETSAEDGrnvivemvasiqqvSTQMSDMSVQMNTLGSHGEQIGSVIKVIEDIAGQTN 382
Cdd:PRK09793 307 QLTATVGQNADNARQASELAKNAATTAQAG--------------GVQVSTMTHTMQEIATSSQKIGDIISVIDGIAFQTN 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 383 LLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIqsiqsgtQEAVTYTQDNCRLVEigveqssGAVSAL 462
Cdd:PRK09793 373 ILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKGLI-------EESVNRVQQGSKLVN-------NAAATM 438
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 515657488 463 EAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQSLQLATRSSENTSGLNAKVAELEALVGKFKL 537
Cdd:PRK09793 439 TDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRVAVFTL 513
|
|
| HAMP |
pfam00672 |
HAMP domain; |
204-257 |
8.39e-08 |
|
HAMP domain;
Pssm-ID: 459898 [Multi-domain] Cd Length: 53 Bit Score: 48.77 E-value: 8.39e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 515657488 204 VLSSSITNRLTRVEQVARRVANGDLTAgDIVDDSGDELADLATSINQMQKSLVD 257
Cdd:pfam00672 1 LLARRILRPLRRLAEAARRIASGDLDV-RLPVSGRDEIGELARAFNQMAERLRE 53
|
|
| HAMP |
cd06225 |
Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain; ... |
210-255 |
2.24e-07 |
|
Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain; HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The structure of the Af1503 HAMP dimer from Archaeoglobus fulgidus has been solved using nuclear magnetic resonance, revealing a parallel four-helix bundle; this structure has been confirmed by cross-linking analysis of HAMP domains from the Escherichia coli aerotaxis receptor Aer. It has been suggested that the four-helix arrangement can rotate between the unusually packed conformation observed in the NMR structure and a canonical coiled-coil arrangement. Such rotation may coincide with signal transduction, but a common mechanism by which HAMP domains relay a variety of input signals has yet to be established.
Pssm-ID: 381743 [Multi-domain] Cd Length: 45 Bit Score: 47.44 E-value: 2.24e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 515657488 210 TNRLTRVEQVARRVANGDLTAgDIVDDSGDELADLATSINQMQKSL 255
Cdd:cd06225 1 TRPLRRLTEAARRIAEGDLDV-RVPVRSKDEIGELARAFNQMAERL 45
|
|
| HAMP |
smart00304 |
HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain; |
208-260 |
6.93e-07 |
|
HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain;
Pssm-ID: 197640 [Multi-domain] Cd Length: 53 Bit Score: 46.09 E-value: 6.93e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 515657488 208 SITNRLTRVEQVARRVANGDLTAgDIVDDSGDELADLATSINQMQKSLVDLLG 260
Cdd:smart00304 2 RLLRPLRRLAEAAQRIADGDLTV-RLPVDGRDEIGELARAFNEMADRLEETIA 53
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
186-255 |
5.26e-06 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 48.80 E-value: 5.26e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 186 TIMVLSAIAIVFGCVIAFVLSSSITNRLTRVEQVARRVANGDLTAgDIVDDSGDELADLATSINQMQKSL 255
Cdd:COG5000 10 LLLLIALLLLLLALWLALLLARRLTRPLRRLAEATRAVAAGDLSV-RLPVTGDDEIGELARAFNRMTDQL 78
|
|
| YesM |
COG2972 |
Sensor histidine kinase YesM [Signal transduction mechanisms]; |
176-259 |
7.49e-06 |
|
Sensor histidine kinase YesM [Signal transduction mechanisms];
Pssm-ID: 442211 [Multi-domain] Cd Length: 445 Bit Score: 48.48 E-value: 7.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 176 LTDSFTTIERTIMVLSAIAIVFGCVIAFVLSSSITNRLTRVEQVARRVANGDLTagDIVDDSGDELADLATSINQMQKSL 255
Cdd:COG2972 148 LFRGLFSLRRLILLIILLLLLLALLLSYLLSRSITRPIKRLKKAMKKVEKGDLV--RLEVSGNDEIGILARSFNEMVERI 225
|
....
gi 515657488 256 VDLL 259
Cdd:COG2972 226 KELI 229
|
|
| HAMP |
COG2770 |
HAMP domain [Signal transduction mechanisms]; |
173-532 |
7.67e-06 |
|
HAMP domain [Signal transduction mechanisms];
Pssm-ID: 442051 [Multi-domain] Cd Length: 631 Bit Score: 48.57 E-value: 7.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 173 LLVLTDSFTTIERTIMVLSAIAIVFGCVIAFVLSSSITNRLTRVEQVARRVANGDLTAgDIVDDSGDELADLATSINQMQ 252
Cdd:COG2770 200 LVVLLEAALAALLLLLLLALLALLLALLLALLLARRITRPLRRLAEAARRIAAGDLDV-RIPVSRKDEIGELARAFNRMA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 253 KSLVDLLGSISSVTNQ-----VQSVTGELSSISQDIVSGASAQADKANLIATAAEELSLTISEVAQQGTSTYEEARRSET 327
Cdd:COG2770 279 DSLRESIEEAEEEEELaeaelARLLEALLELLLALLLLLLALLLLAAAALLLELLLLLLLALLLLLLLAADLLLALALAA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 328 SAEDGRNVIVEMVASIQQVSTQMSDMSVQMNTLGSHGEQIGSVIKVIEDIAGQTNLLALNAAIEAARAGEFGRGFAVVAD 407
Cdd:COG2770 359 LLLLLALELLLEAELLVLLALEALALEAELAAVLALLAALAAALLLLELALEELVLALLALALLALAAAAAAAEAAAAAL 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 408 EVRALAERTTKATQEVSGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSMVNSIATAAEEQT 487
Cdd:COG2770 439 ELAAAAIAAAAAAEAEGGLAELEAEELVAAAEALLLLAALLLLAALGALELLLLEEEEEAGAAAEELAEELLLLEGLLLL 518
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 515657488 488 AVTKEIAADITAISDISEQSLQLATRSSENTSGLNAKVAELEALV 532
Cdd:COG2770 519 LLLEAEALEVAEELLELEEAALLLAAAAELAALLALLLALAAVEA 563
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
1-529 |
3.47e-04 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 43.36 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 1 MKLSVRKKLYAGFGSILAVLVTLVGIVWIEVIGAHKSADEIRMddvpgTVTYLVLIDEAGDVYRDALGA-----ITQADN 75
Cdd:COG5278 2 KNLSIRRKLLLGFALALLLLLVLGVLSYLSLNRLREASEWVEH-----TYEVLRALEELLSALLDAETGqrgylLTGDES 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 76 ALNDYRTNKNEFAQAIKEAKRLESRGSEDHRRIERIEDLMGRFTQEFEsKLVPMINDESALLSNIQQLRSLYESNLIPVE 155
Cdd:COG5278 77 FLEPYEEARAEIDELLAELRSLTADNPEQQARLDELEALIDQWLAELE-QVIALRRAGGLEAALALVRSGEGKALMDEIR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 156 NLLDQASASERADTEQSLLVLTDSFTTIERTIMVLSAIAIVFGCVIAFVLSSSITNRLTRVEQVARRVANGDLTAGDIVD 235
Cdd:COG5278 156 ARLLLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 236 DSGDELADLATSINQMQKSLVDLLGSISSVTNQVQSVTGELSSISQDIVSGASAQADKANLIATAAEELSLTISEVAQQG 315
Cdd:COG5278 236 AALALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAA 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 316 TSTYEEARRSETSAEDGRNVIVEMVASIQQVSTQMSDMSVQMNTLGSHGEQIGSVIKVIEDIAGQTNLLALNAAIEAARA 395
Cdd:COG5278 316 AAAAAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAI 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 396 GEFGRGFAVVADEVRALAERTTKATQEVSGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSM 475
Cdd:COG5278 396 AAAAAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAALA 475
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 515657488 476 VNSIATAAEEQTAVTKEIAADITAISDISEQSLQLATRSSENTSGLNAKVAELE 529
Cdd:COG5278 476 ALAAAAAALAEAEAAAALAAAAALSLALALAALLLAAAEAALAAALAAALASAE 529
|
|
| NarQ |
COG3850 |
Signal transduction histidine kinase NarQ, nitrate/nitrite-specific [Signal transduction ... |
104-516 |
3.44e-03 |
|
Signal transduction histidine kinase NarQ, nitrate/nitrite-specific [Signal transduction mechanisms];
Pssm-ID: 443059 [Multi-domain] Cd Length: 448 Bit Score: 39.87 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 104 DHRRIERIEDLMGRFTQEFESKLVPMINDESALLSNIQQLRSLYESNLIPVENLLDQASASERADTEQSLLVLTDSFTTI 183
Cdd:COG3850 37 LLERTLLRLLSLLASAGLLAALLAALLLLLSLGLLALLLALLLLLLLLLLAALLSLLLLLLLLLLLLLLLLLLLLAAAIN 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 184 ERTIMVLSAIAIVFGCVIAFVLSSSITNRLTRVEQVARRVANGDLTAgDIVDDSGDELADLATSINQMQKSLVDLLGSIS 263
Cdd:COG3850 117 RKLALLRLLLALLLALLLAYLLRRRIVRPLRRLTQAAERIARGDFDA-RVPVSGRDELGTLARAFNRMADELQELYAELE 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 264 SVTNQVQSVTGELSSISQDIVSGASAQADKANLIATAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRNVIVEMVASI 343
Cdd:COG3850 196 EEEELEAELELLALLDELLLLAALLLLLALLLALLLAALLAALLLLLLLQDALAESELLALNILAGLLELLLALLLLLLA 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 344 QQVSTQMSDMSVQMNTLGSHGEQIGSVIKVIEDIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEV 423
Cdd:COG3850 276 SALLLLELELLALLLELVELLALAAAEEALLLLVELAALLLLLLLQAIANASLLLIALASVVAALLELASILALQAALEA 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 424 SGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSSGAVSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDI 503
Cdd:COG3850 356 AAAGAALAAAAAAAGLARALAQAGADAAEALGLLAEASEGAAGQGAGLVDVEGGVAGEGGLVVLIVSIIAGGEAIARGEA 435
|
410
....*....|...
gi 515657488 504 SEQSLQLATRSSE 516
Cdd:COG3850 436 LAARGLAAAAALA 448
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-506 |
4.53e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 56 IDEAGDVYRDALGAITQADNALNDYRtnkNEFAQAIKEAKRLESRGSEDHRRIERIEDLMGRFTQEFES----------- 124
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQLETLR---SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllkkleeaelk 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 125 --------------KLVPMINDESALLSNIQQLRSLYESNLIPVENLLDQASAseRADTEQSLLVLTDSFTTIERTIM-V 189
Cdd:TIGR02168 437 elqaeleeleeeleELQEELERLEEALEELREELEEAEQALDAAERELAQLQA--RLDSLERLQENLEGFSEGVKALLkN 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 190 LSAIAIVFGCV-------------IAFVLSSSITNRLTRVEQVARR-------VANGDLT--AGDIVDDSGDE------- 240
Cdd:TIGR02168 515 QSGLSGILGVLselisvdegyeaaIEAALGGRLQAVVVENLNAAKKaiaflkqNELGRVTflPLDSIKGTEIQgndreil 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 241 ---------LADLATSINQMQKSLVDLLG------SISSVTNQVQSVTGELSSISQD--------IVSGASAQADkANLI 297
Cdd:TIGR02168 595 kniegflgvAKDLVKFDPKLRKALSYLLGgvlvvdDLDNALELAKKLRPGYRIVTLDgdlvrpggVITGGSAKTN-SSIL 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 298 ATAAE--ELSLTISEVAQQGTSTYEEARRSETSAEDGRNVIVEMVASIQQVSTQMSDMSVQmntLGSHGEQIGSVIKVIE 375
Cdd:TIGR02168 674 ERRREieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD---LARLEAEVEQLEERIA 750
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 515657488 376 DIAGQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIQSIQSgTQEAVTYTQDNCRLVEIGVEQS 455
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE-LRAELTLLNEEAANLRERLESL 829
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 515657488 456 SGAVSALEAivsgagNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQ 506
Cdd:TIGR02168 830 ERRIAATER------RLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874
|
|
| |
