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Conserved domains on  [gi|517057407|ref|WP_018246225|]
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MULTISPECIES: anti-sigma factor [Rhizobium]

Protein Classification

anti-sigma factor family protein( domain architecture ID 11475862)

anti-sigma factor family protein may contain an N-terminal zinc-finger domain and belong to the zinc-associated anti-sigma factor (ZAS) family such as Bacillus subtilis anti-sigma-W factor RsiW and Mycobacterium tuberculosis anti-sigma-L factor RslA

Gene Ontology:  GO:0046872|GO:0016020
PubMed:  28319136

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
9-101 2.20e-08

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


:

Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 52.16  E-value: 2.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517057407   9 DADLNAYVDGELDVARRIQVESYLSENPAIAAKVMADLSVRGELRLALAGESAfgrPETRDAARRLERGLSYGRifhSMQ 88
Cdd:COG5662    7 EELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRAALRAALAPDEP---VPARLRARVMARLPRRRR---RRW 80

                         90
                 ....*....|...
gi 517057407  89 RVAAVGILIAAGW 101
Cdd:COG5662   81 RAVAAADLSAAGF 93
 
Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
9-101 2.20e-08

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 52.16  E-value: 2.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517057407   9 DADLNAYVDGELDVARRIQVESYLSENPAIAAKVMADLSVRGELRLALAGESAfgrPETRDAARRLERGLSYGRifhSMQ 88
Cdd:COG5662    7 EELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRAALRAALAPDEP---VPARLRARVMARLPRRRR---RRW 80

                         90
                 ....*....|...
gi 517057407  89 RVAAVGILIAAGW 101
Cdd:COG5662   81 RAVAAADLSAAGF 93
 
Name Accession Description Interval E-value
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
9-101 2.20e-08

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 52.16  E-value: 2.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 517057407   9 DADLNAYVDGELDVARRIQVESYLSENPAIAAKVMADLSVRGELRLALAGESAfgrPETRDAARRLERGLSYGRifhSMQ 88
Cdd:COG5662    7 EELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRAALRAALAPDEP---VPARLRARVMARLPRRRR---RRW 80

                         90
                 ....*....|...
gi 517057407  89 RVAAVGILIAAGW 101
Cdd:COG5662   81 RAVAAADLSAAGF 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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