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Conserved domains on  [gi|544678122|ref|WP_021110392|]
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type IV pilus biogenesis/stability protein PilW [Glaesserella parasuis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
type_IV_pilW super family cl31226
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 11-192 1.24e-54

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


The actual alignment was detected with superfamily member TIGR02521:

Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 173.29  E-value: 1.24e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   11 TACSVALWLVACANQ----TTQVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGD 86
Cdd:TIGR02521   1 LALVFLLALTGCVTTpdvpRSSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   87 NQKAEEAYQQALKLsktqsKNNQvrPDVLNNYGTFLCKQKQFDKAYQQFETALTSQeAYYNQADTLENIALCANMKKDIE 166
Cdd:TIGR02521  81 LEKAEDSFRRALTL-----NPNN--GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFD 152

                         170       180
                  ....*....|....*....|....*.
gi 544678122  167 KQKTALSQLEKIDKSRAERLYNFMEI 192
Cdd:TIGR02521 153 KAEKYLTRALQIDPQRPESLLELAEL 178
 
Name Accession Description Interval E-value
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 11-192 1.24e-54

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 173.29  E-value: 1.24e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   11 TACSVALWLVACANQ----TTQVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGD 86
Cdd:TIGR02521   1 LALVFLLALTGCVTTpdvpRSSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   87 NQKAEEAYQQALKLsktqsKNNQvrPDVLNNYGTFLCKQKQFDKAYQQFETALTSQeAYYNQADTLENIALCANMKKDIE 166
Cdd:TIGR02521  81 LEKAEDSFRRALTL-----NPNN--GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFD 152

                         170       180
                  ....*....|....*....|....*.
gi 544678122  167 KQKTALSQLEKIDKSRAERLYNFMEI 192
Cdd:TIGR02521 153 KAEKYLTRALQIDPQRPESLLELAEL 178
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
39-188 2.00e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 2.00e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  39 ARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLsktqsknNQVRPDVLNNY 118
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-------DPDDAEALNNL 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122 119 GTFLCKQKQFDKAYQQFETALtsqEAYYNQADTLENIALCANMKKDIEKQKTALSQLEKIDKSRAERLYN 188
Cdd:COG0457   83 GLALQALGRYEEALEDYDKAL---ELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYN 149
TPR_12 pfam13424
Tetratricopeptide repeat;
35-102 3.64e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.45  E-value: 3.64e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544678122   35 EAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSV--------LAYYYQQTGDNQKAEEAYQQALKLSK 102
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltattllnLGRLYLELGRYEEALELLERALALAE 76
 
Name Accession Description Interval E-value
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 11-192 1.24e-54

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 173.29  E-value: 1.24e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   11 TACSVALWLVACANQ----TTQVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGD 86
Cdd:TIGR02521   1 LALVFLLALTGCVTTpdvpRSSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   87 NQKAEEAYQQALKLsktqsKNNQvrPDVLNNYGTFLCKQKQFDKAYQQFETALTSQeAYYNQADTLENIALCANMKKDIE 166
Cdd:TIGR02521  81 LEKAEDSFRRALTL-----NPNN--GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFD 152

                         170       180
                  ....*....|....*....|....*.
gi 544678122  167 KQKTALSQLEKIDKSRAERLYNFMEI 192
Cdd:TIGR02521 153 KAEKYLTRALQIDPQRPESLLELAEL 178
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
39-188 2.00e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 2.00e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  39 ARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLsktqsknNQVRPDVLNNY 118
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-------DPDDAEALNNL 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122 119 GTFLCKQKQFDKAYQQFETALtsqEAYYNQADTLENIALCANMKKDIEKQKTALSQLEKIDKSRAERLYN 188
Cdd:COG0457   83 GLALQALGRYEEALEDYDKAL---ELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYN 149
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 28-153 7.00e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 7.00e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  28 QVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLsktqskn 107
Cdd:COG3914   69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALAL------- 141

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 544678122 108 nqvRPD---VLNNYGTFLCKQKQFDKAYQQFETALTSQ----EAYYNQADTLE 153
Cdd:COG3914  142 ---NPDfaeAYLNLGEALRRLGRLEEAIAALRRALELDpdnaEALNNLGNALQ 191
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
38-187 1.30e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 1.30e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  38 KARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLsktqsknNQVRPDVLNN 117
Cdd:COG0457   43 EALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALEL-------DPDDAEALYN 115

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122 118 YGTFLCKQKQFDKAYQQFETALtsqEAYYNQADTLENIALCANMKKDIEKQKTALSQLEKIDKSRAERLY 187
Cdd:COG0457  116 LGLALLELGRYDEAIEAYERAL---ELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-192 2.59e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.90  E-value: 2.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  35 EAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLsktqsknNQVRPDV 114
Cdd:COG2956   74 DRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-------GPENAHA 146

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 544678122 115 LNNYGTFLCKQKQFDKAYQQFETALtsqEAYYNQADTLENIALCANMKKDIEKQKTALSQLEKIDKSRAERLYNFMEI 192
Cdd:COG2956  147 YCELAELYLEQGDYDEAIEALEKAL---KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 34-179 4.51e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 4.51e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  34 SEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTQsknnqvrPD 113
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE-------PE 73

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544678122 114 VLNNYGTFLCKQKQFDKAYQQFETALtsqEAYYNQADTLENIALCANMKKDIEKQKTALSQLEKID 179
Cdd:COG4783   74 ARLNLGLALLKAGDYDEALALLEKAL---KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 40-192 6.99e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.66  E-value: 6.99e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  40 RINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTqsknnqvRPDVLNNYG 119
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD-------RAEALLELA 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 544678122 120 TFLCKQKQFDKAYQQFETALTSQEayyNQADTLENIALCANMKKDIEKQKTALSQLEKIDKSRAERLYNFMEI 192
Cdd:COG2956   84 QDYLKAGLLDRAEELLEKLLELDP---DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAEL 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 39-111 3.71e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.70  E-value: 3.71e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 544678122  39 ARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTQSKNNQVR 111
Cdd:COG4235   53 ALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 33-187 4.16e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.74  E-value: 4.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  33 RSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLsktqsknNQVRP 112
Cdd:COG2956  106 DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL-------DPDCA 178

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 544678122 113 DVLNNYGTFLCKQKQFDKAYQQFETALtsqEAYYNQADTLENIALCANMKKDIEKQKTALSQLEKIDKSRAERLY 187
Cdd:COG2956  179 RALLLLAELYLEQGDYEEAIAALERAL---EQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 34-184 4.90e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.35  E-value: 4.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  34 SEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTqsknnqvRPD 113
Cdd:COG2956   39 PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPD-------DAE 111

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 544678122 114 VLNNYGTFLCKQKQFDKAYQQFETALTSQEayyNQADTLENIALCANMKKDIEKQKTALSQLEKIDKSRAE 184
Cdd:COG2956  112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGP---ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
37-159 5.23e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 5.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  37 VKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLsktqsknNQVRPDVLN 116
Cdd:COG0457   76 AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL-------DPDDADALY 148

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 544678122 117 NYGTFLCKQKQFDKAYQQFETALTSQEAYYNQADTLENIALCA 159
Cdd:COG0457  149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 37-160 8.70e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.23  E-value: 8.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  37 VKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLsktQSKNNQVRPDVLN 116
Cdd:COG3914  146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL---DPDNADAHSNLLF 222

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 544678122 117 NY-----GTFLCKQKQFDKAYQQFETALTSQEAYYNQADTLENIALCAN 160
Cdd:COG3914  223 ALrqacdWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALAR 271
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 39-139 2.36e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 2.36e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  39 ARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTQsknnqvrPDVLNNY 118
Cdd:COG5010   56 IESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN-------PNAYSNL 128

                         90       100
                 ....*....|....*....|.
gi 544678122 119 GTFLCKQKQFDKAYQQFETAL 139
Cdd:COG5010  129 AALLLSLGQDDEAKAALQRAL 149
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-175 3.17e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 3.17e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  35 EAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLsktqsknNQVRPDV 114
Cdd:COG2956  142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ-------DPDYLPA 214

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 544678122 115 LNNYGTFLCKQKQFDKAYQQFETALtsqeAYYNQADTLENIALCANMKKDIEKQKTALSQL 175
Cdd:COG2956  215 LPRLAELYEKLGDPEEALELLRKAL----ELDPSDDLLLALADLLERKEGLEAALALLERQ 271
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 37-139 3.21e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.00  E-value: 3.21e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  37 VKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTQsknnqvrPDVLN 116
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN-------PEALY 89

                         90       100
                 ....*....|....*....|...
gi 544678122 117 NYGTFLCKQKQFDKAYQQFETAL 139
Cdd:COG4235   90 LLGLAAFQQGDYAEAIAAWQKLL 112
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 55-185 9.72e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.85  E-value: 9.72e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  55 KAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTqsknnqvRPDVLNNYGTFLCKQKQFDKAYQQ 134
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD-------NADALLDLAEALLAAGDTEEAEEL 73

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 544678122 135 FETALtsqEAYYNQADTLENIALCANMKKDIEKQKTALSQLEKIDKSRAER 185
Cdd:COG4235   74 LERAL---ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
46-146 1.67e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 1.67e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  46 AYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAeEAYQQALKLsktqsknNQVRPDVLNNYGTFLCKQ 125
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKL-------DPNNAEALLNLAELLLEL 72

                         90       100
                 ....*....|....*....|.
gi 544678122 126 KQFDKAYQQFETALTSQEAYY 146
Cdd:COG3063   73 GDYDEALAYLERALELDPSAL 93
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
64-188 5.80e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.38  E-value: 5.80e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  64 LEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTQsknnqvrPDVLNNYGTFLCKQKQFDKAYQQFETALtsqE 143
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-------AEALYNLGLAYLRLGRYEEALADYEQAL---E 70

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 544678122 144 AYYNQADTLENIALCANMKKDIEKQKTALSQLEKIDKSRAERLYN 188
Cdd:COG0457   71 LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYN 115
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
30-103 1.69e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.75  E-value: 1.69e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544678122  30 DFNRSEAVK-----ARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKT 103
Cdd:COG4785   95 DFDQALELDpdlaeAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN 173
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-187 2.00e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.30  E-value: 2.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   43 LALAYL--EQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTQSKnnqvrpdVLNNYGT 120
Cdd:TIGR02917 163 LGLAQLalAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIA-------VLLALAT 235

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 544678122  121 FLCKQKQFDKAYQQFETAL----TSQEAYYNQadtleniALCANMKKDIEKQKTALSQLEKIDKSRAERLY 187
Cdd:TIGR02917 236 ILIEAGEFEEAEKHADALLkkapNSPLAHYLK-------ALVDFQKKNYEDARETLQDALKSAPEYLPALL 299
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 34-140 2.01e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.30  E-value: 2.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   34 SEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLsktqsknNQVRPD 113
Cdd:TIGR02917 428 PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI-------EPDFFP 500

                          90       100
                  ....*....|....*....|....*..
gi 544678122  114 VLNNYGTFLCKQKQFDKAYQQFETALT 140
Cdd:TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLT 527
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 32-152 3.00e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 3.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   32 NRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQtGDNQKAEEAYQQALKLSKTQsknnqvr 111
Cdd:TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNI------- 836

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 544678122  112 PDVLNNYGTFLCKQKQFDKAYQQFETALT----SQEAYYNQADTL 152
Cdd:TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNiapeAAAIRYHLALAL 881
TPR_12 pfam13424
Tetratricopeptide repeat;
35-102 3.64e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.45  E-value: 3.64e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544678122   35 EAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSV--------LAYYYQQTGDNQKAEEAYQQALKLSK 102
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltattllnLGRLYLELGRYEEALELLERALALAE 76
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 39-102 5.49e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 5.49e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 544678122  39 ARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSK 102
Cdd:COG5010   90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-160 7.46e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.92  E-value: 7.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  33 RSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTQSKNNQVRP 112
Cdd:COG0457  106 DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGE 185

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 544678122 113 DVLNNYGTFLCKQKQFDKAYQQFETALTSQEAYYNQADTLENIALCAN 160
Cdd:COG0457  186 AALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-149 1.78e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.61  E-value: 1.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   43 LALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQAL---------KLSKTQSKNNQVRPD 113
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALelkpdnteaQIGLAQLLLAAKRTE 686

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 544678122  114 VLNNYGTFLCKQKQFDKAYQQFETALTSQEAYYNQA 149
Cdd:TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
42-139 2.53e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 40.28  E-value: 2.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  42 NLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTQsknnqvrPDVLNNYGTF 121
Cdd:COG4785   78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY-------AYAYLNRGIA 150

                         90
                 ....*....|....*...
gi 544678122 122 LCKQKQFDKAYQQFETAL 139
Cdd:COG4785  151 LYYLGRYELAIADLEKAL 168
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
28-180 5.16e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.48  E-value: 5.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  28 QVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYlPHSVL----AYYyqqtgDNQKAEEAYQQALKLSKT 103
Cdd:COG4700   80 EKALEFADTVQNRVRLADALLELGRYDEAIELYEEALTGIFADD-PHILLglaqALF-----ELGRYAEALETLEKLIAK 153

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 544678122 104 QSKNNQVRPDVLnnYGTFLCKQKQFDKAYQQFETALtsqeAYYNQAdtlENIALCANMKKDIEKQKTALSQLEKIDK 180
Cdd:COG4700  154 NPDFKSSDAHLL--YARALEALGDLEAAEAELEALA----RRYSGP---EARYRYAKFLARQGRTAEAKELLEEILD 221
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 41-139 5.36e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 39.97  E-value: 5.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   41 INLALAYLEQSDFPKAKENIDKALEHDVKD---YLP----HSVLAYYYQQTGDNQKAEE-------AYQQ----ALKLSK 102
Cdd:TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDpdiYYHraqlHFIKGEFAQAGKDYQKSIDldpdfifSHIQlgvtQYKEGS 448

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 544678122  103 TQS---------KNNQVRPDVLNNYGTFLCKQKQFDKAYQQFETAL 139
Cdd:TIGR00990 449 IASsmatfrrckKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 39-180 7.22e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 7.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  39 ARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTQsknnqvrPDVLNNY 118
Cdd:COG5010   22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN-------PELYYNL 94

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 544678122 119 GTFLCKQKQFDKAYQQFETALtsqEAYYNQADTLENIALCANMKKDIEKQKTALSQLEKIDK 180
Cdd:COG5010   95 ALLYSRSGDKDEAKEYYEKAL---ALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 39-101 1.40e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 38.35  E-value: 1.40e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 544678122  39 ARINLALA--YLEQSDFPKAKENIDKALEH--DVKDYLphsVLAYYYQQTGDNQKAEEAYQQALKLS 101
Cdd:COG3071  258 PDLLLALGrlCLRNQLWGKAREYLEAALALrpSAEAYA---ELARLLEQLGDPEEAAEHYRKALALA 321
DUF2989 pfam11207
Protein of unknown function (DUF2989); Some members in this bacterial family of proteins are ...
 77-132 1.42e-03

Protein of unknown function (DUF2989); Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.


Pssm-ID: 431727  Cd Length: 201  Bit Score: 38.05  E-value: 1.42e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 544678122   77 LAYYYQQTgDNQKAEEAYQQALKLSKtqsKNNQVRPDVLNNYGTFLCKQKQFDKAY 132
Cdd:pfam11207 146 LATFYTKR-DPAKAIKLLLHVLELSN---KDDKVNPEILLSLASIYHKLKQYEKAY 197
COG3899 COG3899
Predicted ATPase [General function prediction only];
30-152 1.82e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 38.69  E-value: 1.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   30 DFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYL--------PHSVLAYYY---QQTGDNQKAEEAYQQAL 98
Cdd:COG3899   738 DPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALaalrhgnpPASARAYANlglLLLGDYEEAYEFGELAL 817

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 544678122   99 KLSKtQSKNNQVRPDVLNNYGTFLCKQKQFDKAYQQFETALTSQEAYYNQADTL 152
Cdd:COG3899   818 ALAE-RLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALAL 870
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 81-177 4.17e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 35.74  E-value: 4.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  81 YQQTGDNQKAEEAYQQALKlsktQSKNNQVRPDVLNNYGTFLCKQKQFDKAYQQFETALTSQEAYYNQADTLENIALCAN 160
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLK----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYL 78

                         90
                 ....*....|....*..
gi 544678122 161 MKKDIEKQKTALSQLEK 177
Cdd:COG1729   79 ELGDYDKARATLEELIK 95
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-180 6.43e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 36.99  E-value: 6.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   43 LALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLS--------------------- 101
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDpelgradlllilsylrsgqfd 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122  102 ------KTQSKNNQVRPDVLNNYGTFLCKQKQFDKAYQQFETALTSQEAYYNQADTLENIALcanMKKDIEKQKTALSQL 175
Cdd:TIGR02917 449 kalaaaKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI---QEGNPDDAIQRFEKV 525


                  ....*
gi 544678122  176 EKIDK 180
Cdd:TIGR02917 526 LTIDP 530
TPR_12 pfam13424
Tetratricopeptide repeat;
114-177 8.76e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 33.90  E-value: 8.76e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544678122  114 VLNNYGTFLCKQKQFDKAYQQFETALTSQEAYY-----NQADTLENIALCANMKKDIEKqktALSQLEK 177
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpdhpLTATTLLNLGRLYLELGRYEE---ALELLER 70
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 35-105 8.78e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 36.51  E-value: 8.78e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 544678122  35 EAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYYYQQTGDNQKAEEAYQQALKLSKTQS 105
Cdd:COG3914  178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPS 248
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 44-140 9.28e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 36.13  E-value: 9.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678122   44 ALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYY-----YQQTGDNQKAEEAYQQALKLSKtqsknnqvRPDVLN-N 117
Cdd:pfam17874   8 AQLAISKGDAERALELAEQALALLPEDDLLARGLATFvlgeaYLCLGDLDAALQAMREAEALAR--------RADSPHvT 79

                          90       100
                  ....*....|....*....|....*....
gi 544678122  118 YGTFLC------KQKQFDKAYQQFETALT 140
Cdd:pfam17874  80 LWALLQqgeilrAQGRLHQALETYQQALQ 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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