|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
89-545 |
3.28e-23 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 104.40 E-value: 3.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 89 ALEYNDLQAALNIATHWVAQEPKDVPALFYLSHIALKTHEYQLAAETLDKILKIDPtadleqilasiapenaqdrdvllt 168
Cdd:TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP------------------------ 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 169 alrssaekDNPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKYKKNLD 248
Cdd:TIGR02917 497 --------DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE 568
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 249 IRLAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQNEAYYYLAINAERK 328
Cdd:TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 329 QHYETAKAYYR--LVDGSLYVVSRRNLIAIYDKQENLHDALRFLTQERVNYPQHA--------SFLYQAQ---------- 388
Cdd:TIGR02917 649 KNYAKAITSLKraLELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAlgfelegdLYLRQKDypaaiqayrk 728
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 389 --------------AEILKKMGNKKAALNLLDEAIKNLPDDPELIYAEVLLLDPYTDRDKLDKTLKQLLQLEPNSPTYLN 454
Cdd:TIGR02917 729 alkrapssqnaiklHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLN 808
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 455 AYAYtlALQNRRLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAYEL-SHNINIGVRYAKALYMQGS 533
Cdd:TIGR02917 809 NLAW--LYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIaPEAAAIRYHLALALLATGR 886
|
490
....*....|..
gi 555522283 534 LTQFSAVLQQLK 545
Cdd:TIGR02917 887 KAEARKELDKLL 898
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
88-562 |
8.63e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 96.69 E-value: 8.63e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 88 VALEYNDLQAALNIATHWVAQEPKDVPALFYLSHIALKTHEYQLAAETLDKILKID-PTADLEQILASIAPENAQDRDVL 166
Cdd:TIGR02917 31 SYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGyPKNQVLPLLARAYLLQGKFQQVL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 167 --LTALRSSAEKDNPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKYK 244
Cdd:TIGR02917 111 deLPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 245 KNLDIRLAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQNEAYYYLAIN 324
Cdd:TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALV 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 325 AERKQHYETAKayyrlvdgslyvvsrrnliaiydkqENLHDALRFltqervnYPQHASFLYQAQAeILKKMGNKKAALNL 404
Cdd:TIGR02917 271 DFQKKNYEDAR-------------------------ETLQDALKS-------APEYLPALLLAGA-SEYQLGNLEQAYQY 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 405 LDEAIKNLPDDPE--LIYAEVLLLDPYTDRDKldKTLKQLLQLEPNSPTYLNAYAYTLaLQNRRLKEARQYAEQALEYAP 482
Cdd:TIGR02917 318 LNQILKYAPNSHQarRLLASIQLRLGRVDEAI--ATLSPALGLDPDDPAALSLLGEAY-LALGDFEKAAEYLAKATELDP 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 483 EQASILDTLGYIAFLQNDYEAAAEALGKAYELSHN-INIGVRYAKALYMQGSLTQFSAVLQQLKQKHANDPQLQQLDALI 561
Cdd:TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPElGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474
|
.
gi 555522283 562 L 562
Cdd:TIGR02917 475 Y 475
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
70-562 |
2.82e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 82.44 E-value: 2.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 70 TVLAIKSNSTSIKQRALDVALEYNDLQAALNIATHWVAQEPKDVPALFYLSHIALKTHEYQLAAETLDKILKIDPTADL- 148
Cdd:TIGR02917 252 ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQa 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 149 EQILASIAPENAQDRDVLLTALRS-SAEKDNPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALS 227
Cdd:TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPAlGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQG 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 228 DQEGALKWYAKSSRKYKKNLDIRLAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDL 307
Cdd:TIGR02917 412 DPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 308 RNSAKYQNEAYYYLAINAERKQHYETAKAYYR--LVDGSLYVVSRRNLIAIYDKQENLHDALRFLTQERVNYPQHASfLY 385
Cdd:TIGR02917 492 LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEkvLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE-PA 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 386 QAQAEILKKMGNKKAALNLLDEAIKNLPDDPELIYAEVLLLDPYTDRDKLDKTLKQLLQLEPNSPT--YLNAYAY----- 458
Cdd:TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALalLLLADAYavmkn 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 459 --------------------------TLALQNRRLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAY 512
Cdd:TIGR02917 651 yakaitslkralelkpdnteaqiglaQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 555522283 513 ELSHNINIGVRYAKALYMQGSLTQFSAVLQQLKQKHANDPQLQQLDALIL 562
Cdd:TIGR02917 731 KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
250-548 |
5.26e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 78.23 E-value: 5.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 250 RLAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQNEAYYYLAINAERKQ 329
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 330 HYETAKAYYRLVDGS--LYVVSRRNLIAIYDKQENLHDALRFLTQERVNYPQHASFLYQaQAEILKKMGNKKAALnllde 407
Cdd:COG2956 91 LLDRAEELLEKLLELdpDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE-LAELYLEQGDYDEAI----- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 408 aiknlpddpeliyaevllldpytdrdkldKTLKQLLQLEPNSPTYLNAYAYtLALQNRRLKEARQYAEQALEYAPEQASI 487
Cdd:COG2956 165 -----------------------------EALEKALKLDPDCARALLLLAE-LYLEQGDYEEAIAALERALEQDPDYLPA 214
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 555522283 488 LDTLGYIAFLQNDYEAAAEALGKAYELSHNINIGVRYAKALYMQGSLTQFSAVLQQLKQKH 548
Cdd:COG2956 215 LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
217-479 |
1.33e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.38 E-value: 1.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 217 LMKANLLIALSDQEGALKWYAKSSRKYKKNLDIRLAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQ 296
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 297 YDKAEQYLVDLRNSAKYQNEAYYYLAINAERKQHYETAKAYY-RLVDGSLYVVSRRNLIA-IYDKQENLHDALRFLTQER 374
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLeRLLKLGPENAHAYCELAeLYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 375 VNYPQHASfLYQAQAEILKKMGNKKAALNLLDEAIKNLPDDPELIYAEVLLLDPYTDRDKLDKTLKQLLQLEPNSPTYLN 454
Cdd:COG2956 172 KLDPDCAR-ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250
|
250 260
....*....|....*....|....*
gi 555522283 455 AYAytLALQNRRLKEARQYAEQALE 479
Cdd:COG2956 251 LAD--LLERKEGLEAALALLERQLR 273
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
72-562 |
2.72e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.28 E-value: 2.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 72 LAIKSNSTSIKQRALDVALEYNDLQAALNIATHWVAQEPKDVPALFYLSHIALKTHEYQLAAETLDKILKIDPTAD---L 148
Cdd:TIGR02917 152 LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIavlL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 149 EQILASIAPENAQDRDVLLTALRSSAeKDNPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSD 228
Cdd:TIGR02917 232 ALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGN 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 229 QEGALKWYAKSSRKYKKNLDIRLaeIRYLIQINQSQL--ALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYL-- 304
Cdd:TIGR02917 311 LEQAYQYLNQILKYAPNSHQARR--LLASIQLRLGRVdeAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLak 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 305 ---VDLRNSAKYQNEAYYYLAINAERK--QHYETAKAyyrlVDGSLyVVSRRNLIAIYDKQENLHDALRFLTQERVNYPQ 379
Cdd:TIGR02917 389 ateLDPENAAARTQLGISKLSQGDPSEaiADLETAAQ----LDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKKQPD 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 380 HAS-FLYQAQAEILKKmgnkkaalnlldeaiknlpddpeliyaevllldpytDRDKLDKTLKQLLQLEPNSPTYLnAYAY 458
Cdd:TIGR02917 464 NASlHNLLGAIYLGKG------------------------------------DLAKAREAFEKALSIEPDFFPAA-ANLA 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 459 TLALQNRRLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAYELsHNINIGVRYAKALYM--QGSLTQ 536
Cdd:TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL-NPQEIEPALALAQYYlgKGQLKK 585
|
490 500
....*....|....*....|....*.
gi 555522283 537 FSAVLQQLKQKHANDPQLQQLDALIL 562
Cdd:TIGR02917 586 ALAILNEAADAAPDSPEAWLMLGRAQ 611
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
89-339 |
4.45e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 69.76 E-value: 4.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 89 ALEYNDLQAALNIATHWVAQEPKDVPALFYLSHIALKTHEYQLAAETLDKILKIDPTADLEQILASIAPENAQDRDVLLT 168
Cdd:COG2956 18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 169 ALRSSAEKD--NPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKYKKN 246
Cdd:COG2956 98 LLEKLLELDpdDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 247 LDIRLAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKyQNEAYYYLAINAE 326
Cdd:COG2956 178 ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLE 256
|
250
....*....|...
gi 555522283 327 RKQHYETAKAYYR 339
Cdd:COG2956 257 RKEGLEAALALLE 269
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
177-410 |
1.74e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.83 E-value: 1.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 177 DNPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKYKKNLDIRLAEIRY 256
Cdd:COG2956 40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 257 LIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQNEAYYYLAINAERKQHYETAKA 336
Cdd:COG2956 120 YEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIA 199
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 555522283 337 YYR--LVDGSLYVVSRRNLIAIYDKQENLHDALRFLTQERVNYPQHASFLyqAQAEILKKMGNKKAALNLLDEAIK 410
Cdd:COG2956 200 ALEraLEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL--ALADLLERKEGLEAALALLERQLR 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
250-514 |
4.74e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 62.32 E-value: 4.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 250 RLAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQNEAYYYLAINAERKQ 329
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 330 HyetakayyrlvdgslyvvsrrnlIAIYDKQENLHDALRFLTQERVNYPQHASFLYQAqAEILKKMGNKKAALNLLDEAI 409
Cdd:COG3914 84 A-----------------------ALLLQALGRYEEALALYRRALALNPDNAEALFNL-GNLLLALGRLEEALAALRRAL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 410 KNLPDDPE--LIYAEVLLldpytDRDKLD---KTLKQLLQLEPNSPTYLNAYAYTLALQNRrLKEARQYAEQALEYAPEQ 484
Cdd:COG3914 140 ALNPDFAEayLNLGEALR-----RLGRLEeaiAALRRALELDPDNAEALNNLGNALQDLGR-LEEAIAAYRRALELDPDN 213
|
250 260 270
....*....|....*....|....*....|
gi 555522283 485 ASILDTLGYIAFLQNDYEAAAEALGKAYEL 514
Cdd:COG3914 214 ADAHSNLLFALRQACDWEVYDRFEELLAAL 243
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
385-515 |
2.39e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.97 E-value: 2.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 385 YQAQAEILKKMGNKKAALNLLDEAIKNLPDDPELIYAEVLLLDPYTDRDKLDKTLKQLLQLEPNSPTYLNAYAYTLALQN 464
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 555522283 465 RrLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAYELS 515
Cdd:COG4783 87 D-YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
225-517 |
2.85e-09 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 58.77 E-value: 2.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 225 ALSDQEGALKWYAKSSRKYKKN-LDIRLAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQY 303
Cdd:COG3071 62 ALGDYERRDEYLAQALELAPEAeLAVLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 304 LVDLRNSAKYQNEAYYYLAINAERKQhyetakayyrlvdgslyvvsrrnLIAIYDKQENLHDALRFLTQERVNYPQhasf 383
Cdd:COG3071 142 LPALRKHKALSAEEAQALERRAYLGL-----------------------LRQAARDAEALKALWKALPRAERRDPE---- 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 384 LYQAQAEILKKMGNKKAALNLLDEAIKNLPDdPELIYAEVLLLDPytDRDKLDKTLKQLLQLEPNSPTYLNAYAYtLALQ 463
Cdd:COG3071 195 LAAAYARALIALGDHDEAERLLREALKRQWD-PRLVRLYGRLQGG--DPAKQLKRAEKWLKKHPNDPDLLLALGR-LCLR 270
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 555522283 464 NRRLKEARQYAEQALEYAPeQASILDTLGYIAFLQNDYEAAAEALGKAYELSHN 517
Cdd:COG3071 271 NQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
350-557 |
2.92e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 59.62 E-value: 2.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 350 RRNLIAIYDKQENLHDALRFLTQERVNYPQHASFLYQAQAEILKKMGNKKAALNLLDEAIKNLpddpELIYAEVLLLDPY 429
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALL----LLAALLELAALLL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 430 TDRDKLD---KTLKQLLQLEPNSPTYLNAYAYTLALQNRrLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAE 506
Cdd:COG3914 89 QALGRYEealALYRRALALNPDNAEALFNLGNLLLALGR-LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 555522283 507 ALGKAYELS-HNINIGVRYAKALYMQGSLTQFSAVLQQLKQKHANDPQLQQL 557
Cdd:COG3914 168 ALRRALELDpDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
385-562 |
3.47e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.71 E-value: 3.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 385 YQAQAEILKKMGNKKAALNLLDEAIKNLPDDPELIYAEVLLLDPYTDRDKLDKTLKQLLQLEPNSPTYLNAYAYTLALQN 464
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 465 RrLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAYELS-HNINIGVRYAKALYMQGSLTQFSAVLQQ 543
Cdd:COG0457 91 R-YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRYEEALELLEK 169
|
170
....*....|....*....
gi 555522283 544 LKQKHANDPQLQQLDALIL 562
Cdd:COG0457 170 LEAAALAALLAAALGEAAL 188
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
283-532 |
1.95e-08 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 56.07 E-value: 1.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 283 ALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQNEAYYYLAINAERKQHYETAKAYYRLV---DGSLYVVSRRNLIAIYDK 359
Cdd:COG3071 18 AALLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQAlelAPEAELAVLLTRAELLLD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 360 QENLHDALRFLTQERVNYPQHASFLyQAQAEILKKMGNKKAALNLLDEAIK-NLPDDPELI-----YAEVLLLDPYTDRD 433
Cdd:COG3071 98 QGQAEQALATLEALRAGAPRHPQVL-RLLLQAYRQLGDWEELLELLPALRKhKALSAEEAQalerrAYLGLLRQAARDAE 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 434 KLDKTLKQLLQLEPNSPTYLNAYAYTLA------------------------------LQNRRLKEARQYAEQALEYAPE 483
Cdd:COG3071 177 ALKALWKALPRAERRDPELAAAYARALIalgdhdeaerllrealkrqwdprlvrlygrLQGGDPAKQLKRAEKWLKKHPN 256
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 555522283 484 QASILDTLGYIAFLQNDYEAAAEALGKAYELSHNINIGVRYAKALYMQG 532
Cdd:COG3071 257 DPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLG 305
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
71-243 |
1.12e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.58 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 71 VLAIKSNSTSIKQRALDVALEYNDLQAALNIATHWVAQEPKDVPALFYLSHIALKTHEYQLAAETLDKILKIDPTADLEQ 150
Cdd:COG2956 102 LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 151 ILASIAPENAQDRDVLLTALRSSAEKD--NPSILALIANLEAQNGQLESALTNINKALRRRPKVtSFILMKANLLIALSD 228
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDpdYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEG 260
|
170
....*....|....*
gi 555522283 229 QEGALKWYAKSSRKY 243
Cdd:COG2956 261 LEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
83-311 |
2.03e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.84 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 83 QRALDVALEYNDLQAALNIATHWVAQEPKDVPALFYLSHIALKTHEYQLAAETLDKILKIDPTADLEQILASIAPENAQD 162
Cdd:COG3914 5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 163 RDVL---------LTALRSSAEKD--NPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEG 231
Cdd:COG3914 85 ALLLqalgryeeaLALYRRALALNpdNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 232 ALKWYAKSSRKYKKNLDIRLAEIRYLIQINQSQLALEKLENVIEANPKAEEA----LFIAgLTSIDLKQYDKAEQYLVDL 307
Cdd:COG3914 165 AIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAhsnlLFAL-RQACDWEVYDRFEELLAAL 243
|
....
gi 555522283 308 RNSA 311
Cdd:COG3914 244 ARGP 247
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
274-514 |
5.38e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 51.16 E-value: 5.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 274 IEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQNEAYYYLAINAERKQHYETAKAYYR--LVDGSLYVVSRR 351
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEqaLELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 352 NLIAIYDKQENLHDALRFLTQERVNYPQHASFLYQaQAEILKKMGNKKAALNLLDEAIKNLPDDPELIYAEVLLLDPYTD 431
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYN-LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 432 RDKLDKTLKQLLQLEPNSPTYLNAYAYTLALQNRRLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKA 511
Cdd:COG0457 160 YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
|
...
gi 555522283 512 YEL 514
Cdd:COG0457 240 LYQ 242
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
354-544 |
5.57e-07 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 52.78 E-value: 5.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 354 IAIYDKQENLHDALRFLTQERvnyPQHASFLYQAQAEILKKM--GNKKAALNLLDEAIKNLPDDPELIYAEVLLLDPYTD 431
Cdd:PRK11447 242 LQVFSDGDSVAAARSQLAEQQ---KQLADPAFRARAQGLAAVdsGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 432 RDKLDKTLKQLLQLEPNSP------TYLNAYAYTLALQN-------RRLKEARQYAEQALEYAPEQASILDTLGYIAFLQ 498
Cdd:PRK11447 319 RARAVAQFEKALALDPHSSnrdkweSLLKVNRYWLLIQQgdaalkaNNLAQAERLYQQARQVDNTDSYAVLGLGDVAMAR 398
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 555522283 499 NDYEAAAEALGKAYELSHNINIGVRYAKALYMQGSLTQFSAVLQQL 544
Cdd:PRK11447 399 KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL 444
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
106-373 |
9.58e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.39 E-value: 9.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 106 VAQEPKDVPALFYLSHIALKTHEYQLAAETLDKILKIDPtadleqilasiapenaqdrdvlltalrssaekDNPSILALI 185
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP--------------------------------DDAEALYNL 48
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 186 ANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKYKKNLDIRLAEIRYLIQINQSQL 265
Cdd:COG0457 49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 266 ALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQNEAYYYLAINAERKQHYETAKAYYRLVDGSL 345
Cdd:COG0457 129 AIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
|
250 260
....*....|....*....|....*...
gi 555522283 346 YVVSRRNLIAIYDKQENLHDALRFLTQE 373
Cdd:COG0457 209 KKLAILTLAALAELLLLALALLLALRLA 236
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
439-561 |
2.73e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.92 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 439 LKQLLQLEPNSPTYLNAYAYTLaLQNRRLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAYELSHNi 518
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAY-LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD- 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 555522283 519 NIGVRY--AKALYMQGSLTQFSAVLQQLKQKHANDPQLQQLDALI 561
Cdd:COG4235 84 NPEALYllGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
182-304 |
4.16e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.72 E-value: 4.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 182 LALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKYKKNLDIRLAEIRYLIQIN 261
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 555522283 262 QSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYL 304
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
251-562 |
5.45e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.31 E-value: 5.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 251 LAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQNEAYYYLA----INAE 326
Cdd:TIGR02917 26 IEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLAraylLQGK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 327 RKQHYETAKAYYRLVDGSLYVVSRRNLIAiYDKQENLHDALRFLTQERVNYPQHASFLYQAqAEILKKMGNKKAALNLLD 406
Cdd:TIGR02917 106 FQQVLDELPGKTLLDDEGAAELLALRGLA-YLGLGQLELAQKSYEQALAIDPRSLYAKLGL-AQLALAENRFDEARALID 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 407 EAIKNLPD--DPELIYAEVLLLDpyTDRDKLDKTLKQLLQLEPNSPTYLNAYAyTLALQNRRLKEARQYAEQALEYAPEQ 484
Cdd:TIGR02917 184 EVLTADPGnvDALLLKGDLLLSL--GNIELALAAYRKAIALRPNNIAVLLALA-TILIEAGEFEEAEKHADALLKKAPNS 260
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 555522283 485 ASILDTLGYIAFLQNDYEAAAEALGKAYELSHNINIGVRYAKA-LYMQGSLTQFSAVLQQLKQKHANDPQLQQLDALIL 562
Cdd:TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGAsEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
431-515 |
7.42e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.78 E-value: 7.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 431 DRDKLDKTLKQLLQLEPNSPTYLNAYAYTLALQNrRLKEARQYaEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGK 510
Cdd:COG3063 7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-RYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84
|
....*
gi 555522283 511 AYELS 515
Cdd:COG3063 85 ALELD 89
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
460-562 |
1.03e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.57 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 460 LALQNRRLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAYELS-HNINIGVRYAKALYMQGSLTQFS 538
Cdd:COG4783 13 ALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDpDEPEARLNLGLALLKAGDYDEAL 92
|
90 100
....*....|....*....|....
gi 555522283 539 AVLQQLKQKHANDPQLQQLDALIL 562
Cdd:COG4783 93 ALLEKALKLDPEHPEAYLRLARAY 116
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
350-484 |
2.13e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 350 RRNLIAIYDKQENLHDALRFLTQERVNYPQHASFlYQAQAEILKKMGNKKAALNLLDEAIKNLPDDPELIYAEVLLLDPY 429
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEA-FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 555522283 430 TDRDKLDKTLKQLLQLEPNSPTYLNAYAYTLAlQNRRLKEARQYAEQALEYAPEQ 484
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYR-ALGRPDEAIAALEKALELDPDD 139
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
193-465 |
2.56e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 47.39 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 193 GQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKYKKNLDIrlAEIRYLIQINQSQLALEKLEN 272
Cdd:PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR--DKWESLLKVNRYWLLIQQGDA 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 273 VIEAN--PKAEealfiagltsidlKQYDKAEQylvdLRNSAKYqneAYYYLAINAERKQHYETAKAYYRLV-----DGSL 345
Cdd:PRK11447 361 ALKANnlAQAE-------------RLYQQARQ----VDNTDSY---AVLGLGDVAMARKDYAAAERYYQQAlrmdpGNTN 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 346 YVvsrRNLIAIYdKQENLHDALRFLTQerVNYPQHASF----------LYQAQAEILKKMGNKKAALNLLDEAIKNLPDD 415
Cdd:PRK11447 421 AV---RGLANLY-RQQSPEKALAFIAS--LSASQRRSIddierslqndRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 555522283 416 PELIYAEVLLLDPYTDRDKLDKTLKQLLQLEPNSPTYLNAYAYTLALQNR 465
Cdd:PRK11447 495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR 544
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
198-304 |
2.86e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.84 E-value: 2.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 198 ALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKYKKNLDIRLAEIRYLIQINQSQLALEKLENVIEAN 277
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100
....*....|....*....|....*..
gi 555522283 278 PKAEEALFIAGLTSIDLKQYDKAEQYL 304
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAW 108
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
97-222 |
4.20e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.46 E-value: 4.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 97 AALNIATHWVAQEPKDVPALFYLSHIALKTHEYQLAAETLDKILKIDP-TADLEQILASI---APENAQDRDVLLTALRs 172
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPdNADALLDLAEAllaAGDTEEAEELLERALA- 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 555522283 173 sAEKDNPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANL 222
Cdd:COG4235 80 -LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
389-485 |
6.67e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 6.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 389 AEILKKMGNKKAALNLLDEAIKNLPDDPELI--YAEVLLLDpyTDRDKLDKTLKQLLQLEPNSPTYLNAYAYtLALQNRR 466
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALldLAEALLAA--GDTEEAEELLERALALDPDNPEALYLLGL-AAFQQGD 100
|
90
....*....|....*....
gi 555522283 467 LKEARQYAEQALEYAPEQA 485
Cdd:COG4235 101 YAEAIAAWQKLLALLPADA 119
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
89-246 |
7.19e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.87 E-value: 7.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 89 ALEYNDLQAALNIATHWVAQEPKDVPALFYLSHIALKTHEYQLAAETLDKILKIDPtadleqilasiapenaqdrdvllt 168
Cdd:COG4783 14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP------------------------ 69
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 555522283 169 alrssaekDNPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKYKKN 246
Cdd:COG4783 70 --------DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
377-555 |
7.58e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 44.14 E-value: 7.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 377 YPQHASFLYQAQAEILKKMGNKKAALNLLDEAIKNLPDDPELIYAEVLLLDPYTDRDKLDKTLKQLLQLEPNSPTYLNAY 456
Cdd:COG4785 34 VLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNR 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 457 AYTLaLQNRRLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAYELSHNiniGVRYAKALYMQGSLTQ 536
Cdd:COG4785 114 GLAY-LLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN---DPERALWLYLAERKLD 189
|
170
....*....|....*....
gi 555522283 537 FSAVLQQLKQKHANDPQLQ 555
Cdd:COG4785 190 PEKALALLLEDWATAYLLQ 208
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
469-562 |
1.12e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 469 EARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAYELS-HNINIGVRYAKALYMQGSLTQFSAVLQQLKQK 547
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90
....*....|....*
gi 555522283 548 HANDPQLQQLDALIL 562
Cdd:COG4235 81 DPDNPEALYLLGLAA 95
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
400-548 |
1.23e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.64 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 400 AALNLLDEAIKNLPDDPELIYAEVLLLDPYTDRDKLDKTLKQLLQLEPNSPTYLNAYAYTLALQNRRLKEARQYAEQALE 479
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 480 YAPEQASILDTLGYIAFLQNDYEAAAEALGKAYELS-HNINIGVRYAKALYMQGSLTQFSAVLQQLKQKH 548
Cdd:COG5010 83 LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
235-515 |
1.62e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.59 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 235 WYAKSSRKYKKNLDI-----RLA---EIRYLIQI--NQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYL 304
Cdd:TIGR00990 309 SYEEAARAFEKALDLgklgeKEAialNLRGTFKClkGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 305 vdlrNSAKYQN----EAYYYLAINAERKQHYETAKAYyrlvdgslyvvsrrnliaiYDKQENLHDALRFltqervNYPQH 380
Cdd:TIGR00990 389 ----DKALKLNsedpDIYYHRAQLHFIKGEFAQAGKD-------------------YQKSIDLDPDFIF------SHIQL 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 381 ASFLYqaqaeilkKMGNKKAALNLLDEAIKNLPDDPEL--IYAEVLLldpytDRDKLDKTLKQL---LQLEPNS-PTYLN 454
Cdd:TIGR00990 440 GVTQY--------KEGSIASSMATFRRCKKNFPEAPDVynYYGELLL-----DQNKFDEAIEKFdtaIELEKETkPMYMN 506
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 555522283 455 -------AYAYTLALQNrrLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAYELS 515
Cdd:TIGR00990 507 vlplinkALALFQWKQD--FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
174-279 |
1.77e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.72 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 174 AEKDNPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKYKKNLDIRLAE 253
Cdd:COG4783 33 LDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRL 112
|
90 100
....*....|....*....|....*.
gi 555522283 254 IRYLIQINQSQLALEKLENVIEANPK 279
Cdd:COG4783 113 ARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
249-508 |
3.22e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 42.73 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 249 IRLAEIRYLIqiNQSQLALEKLENVIEANPKAEEALF-IAGLTSIDLKQYD---KAEQYLVDLRNSAKYQNEAYYYLAIN 324
Cdd:pfam13429 12 YALATLLYGQ--GDPRKALAALKEGAQTAPASDTEFWrTLADLAWALQQDDdarRAYRQLLASGKARADDYERLILLLYD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 325 AERKQHYETAKAYYRLVDGSLYVVSrrnliAIYdKQENLHDALR----FLTQERVNYPQHASFLYQAQAEILKKMGNKKA 400
Cdd:pfam13429 90 ARPKDAARLSELGWRRFRSPRHLYS-----ALY-LYERAGDYDRlarlLASLEELPAAEQSPAFWLARAEYYRQTGEPDA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 401 ALNLLDEAIKNLPDDPELIYAEVLLLDPYTDRDKLDKTLKQLLQLEPNSPTYLNAYAYTLALQNRrlkearqyAEQALEY 480
Cdd:pfam13429 164 ALRDYRRALALAPASTELRAALLWFLIDLGRRAELRPALAAWRARAETDADLWGPLAAAYLRLGR--------PRKALPY 235
|
250 260 270
....*....|....*....|....*....|....
gi 555522283 481 APEQASI-----LDTLGYI-AFLQNDYEAAAEAL 508
Cdd:pfam13429 236 LRKQAASnrndpLWLLAYAdALEQAGRADAAWRL 269
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
247-380 |
3.39e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.95 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 247 LDIRLAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQNEAYYYLAINAE 326
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 555522283 327 RKQHYETAKAYYR--LVDGSLYVVSRRNLIAIYDKQENLHDALRFLTQERVNYPQH 380
Cdd:COG4783 84 KAGDYDEALALLEkaLKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
363-515 |
6.47e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.71 E-value: 6.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 363 LHDALRFLTQERVNYPQHASFLYQAQAEILKKMGNKKAALNLLDEAIKNLPDDPELIYAEVLLLDPYTDRDKLDKTLKQL 442
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 555522283 443 LQLEPNSPTYLNAYAYTLALQNrRLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAYELS 515
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSG-DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
166-287 |
8.84e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 8.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 166 LLTALRSSAEKD--NPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKY 243
Cdd:COG4235 2 AIARLRQALAANpnDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 555522283 244 KKNLDIRLAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIA 287
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
461-568 |
1.04e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 41.46 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 461 ALQNRRLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEAAAEALGKAYELSHNINigvrYAKALYM------QGSL 534
Cdd:cd24142 10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG----YEKYLYLgqlsggEEAL 85
|
90 100 110
....*....|....*....|....*....|....
gi 555522283 535 TQFSAVLQQLKQKHANDPQLQQLDALILPTSAKK 568
Cdd:cd24142 86 QYYEKGIEILEEELQALQAASAEAEEEAEELKRK 119
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
88-314 |
1.21e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 40.76 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 88 VALEYNDLQAALNIATHWVAQEPKDVPALFYLSHIALKTHEYQLAAETLDKILKIDPTADLEQILASIAPENAQDRDVLL 167
Cdd:COG0457 17 AYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 168 TALRSSAEKD--NPSILALIANLEAQNGQLESALTNINKALRRRPKVTSFILMKANLLIALSDQEGALKWYAKSSRKYKK 245
Cdd:COG0457 97 EDYDKALELDpdDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 555522283 246 NLDIRLAEIRYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQ 314
Cdd:COG0457 177 ALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
460-556 |
3.12e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 460 LALQNRRLKEARQYAEQALEYAPEQASILDTLGYIAFLQNDYEaAAEALGKAYEL-SHNINIGVRYAKALYMQGsltQFS 538
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYD-EAIALEKALKLdPNNAEALLNLAELLLELG---DYD 76
|
90
....*....|....*...
gi 555522283 539 AVLQQLKQKHANDPQLQQ 556
Cdd:COG3063 77 EALAYLERALELDPSALR 94
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
255-339 |
3.23e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.06 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 255 RYLIQINQSQLALEKLENVIEANPKAEEALFIAGLTSIDLKQYDKAEQYLVDLRNSAKYQNEAYYYLAINAERKQHYETA 334
Cdd:COG4235 25 RAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEA 104
|
....*
gi 555522283 335 KAYYR 339
Cdd:COG4235 105 IAAWQ 109
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
498-561 |
3.71e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.02 E-value: 3.71e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 555522283 498 QNDYEAAAEALGKAYELS-HNINIGVRYAKALYMQGSLTQFSAVLQQLKQKHANDPQLQQLDALI 561
Cdd:pfam14559 1 EGDYAEALELLEQALAEDpDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
204-336 |
3.92e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.09 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 204 KALRRRPKVTSFILMkANLLIALSDQEGALKWYAKS-SRKYKKNLDIRLAEIRYLIQINQSQLALEKLENVIEANP--KA 280
Cdd:COG4700 81 KALEFADTVQNRVRL-ADALLELGRYDEAIELYEEAlTGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPdfKS 159
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 555522283 281 EEALFIAGLTSIDLKQYDKAE-QYLVDLRNSAKYqnEAYYYLAINAERKQHYETAKA 336
Cdd:COG4700 160 SDAHLLYARALEALGDLEAAEaELEALARRYSGP--EARYRYAKFLARQGRTAEAKE 214
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
51-156 |
4.02e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 51 MVAEFALAYDDIPNALHNYT-VLAIKSNSTSIKQRALDVALEYNDLQAALNIATHWVAQEPKDVPALFYLSHIALKTHEY 129
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEkALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
90 100
....*....|....*....|....*...
gi 555522283 130 QLAAETLDKILKIDPT-ADLEQILASIA 156
Cdd:COG4235 102 AEAIAAWQKLLALLPAdAPARLLEASIA 129
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
295-425 |
5.25e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 295 KQYDKAEQYLVDLRN---SAKYQNEAYYYLAINAERKQHYETAKAYYrlvdgslyvvsrRNLIAIYDKQENLHDALRFLt 371
Cdd:COG1729 7 GDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAF------------EKLLKRYPDSPKAPDALLKL- 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 555522283 372 qervnypqhasflyqaqAEILKKMGNKKAALNLLDEAIKNLPDDPELIYAEVLL 425
Cdd:COG1729 74 -----------------GLSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
314-449 |
8.78e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.09 E-value: 8.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555522283 314 QNEAYYYLAINAERKQHYETAKAYYR--LVDGSLYVVSRRNLIAIYDKQENLHDALRFLTQERVNYPQHASfLYQAQAEI 391
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEkaLELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE-ARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 555522283 392 LKKMGNKKAALNLLDEAIKNLPDDPELIYAEVLLLDPYTDRDKLDKTLKQLLQLEPNS 449
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| |
