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Conserved domains on  [gi|640675065|ref|WP_025099860|]
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MULTISPECIES: phasin family protein [Burkholderia]

Protein Classification

phasin family protein( domain architecture ID 10020020)

phasin (PHA-granule associated protein) family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
phasin TIGR01841
phasin family protein; This model describes a family of small proteins found associated with ...
 27-114 1.26e-18

phasin family protein; This model describes a family of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins; the member from Rhodospirillum rubrum is an activator of polyhydroxybutyrate (PHB) degradation. However, the member from Magnetospirillum sp. AMB-1 is called a magnetic particle membrane-specific GTPase.


:

Pssm-ID: 130900  Cd Length: 88  Bit Score: 76.24  E-value: 1.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640675065   27 AFESVEKLIELNVQVVKSTLAESQENVQRALSVKDAQELLALQASFAQPLAEKALAYGRHLYDIASSTQAEFAKVAESQY 106
Cdd:TIGR01841   1 AFEGVERLVKLQLQALRATLDESVAASQRLASAGDPQELIALQTEFAKPAAEKLLAYSRELYEIAAKSQAEALKLLRDRF 80


                  ....*...
gi 640675065  107 EEQNRKVQ 114
Cdd:TIGR01841  81 AEGSREAQ 88
 
Name Accession Description Interval E-value
phasin TIGR01841
phasin family protein; This model describes a family of small proteins found associated with ...
 27-114 1.26e-18

phasin family protein; This model describes a family of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins; the member from Rhodospirillum rubrum is an activator of polyhydroxybutyrate (PHB) degradation. However, the member from Magnetospirillum sp. AMB-1 is called a magnetic particle membrane-specific GTPase.


Pssm-ID: 130900  Cd Length: 88  Bit Score: 76.24  E-value: 1.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640675065   27 AFESVEKLIELNVQVVKSTLAESQENVQRALSVKDAQELLALQASFAQPLAEKALAYGRHLYDIASSTQAEFAKVAESQY 106
Cdd:TIGR01841   1 AFEGVERLVKLQLQALRATLDESVAASQRLASAGDPQELIALQTEFAKPAAEKLLAYSRELYEIAAKSQAEALKLLRDRF 80


                  ....*...
gi 640675065  107 EEQNRKVQ 114
Cdd:TIGR01841  81 AEGSREAQ 88
Phasin_2 pfam09361
Phasin protein; This entry describes a group of small proteins found associated with ...
 15-104 4.62e-15

Phasin protein; This entry describes a group of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins.


Pssm-ID: 462770  Cd Length: 90  Bit Score: 67.22  E-value: 4.62e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640675065   15 AHLESLFGLTSKAFESVEKLIELNVQVVKSTLAESQENVQRALSVKDAQELLALQASFAQPLAEKALAYGRHLYDIASST 94
Cdd:pfam09361   1 ANLEALVALASLAFKGAEKLAALNLEAARASLEESLAAAKALAGAKDPQELFELQSELARPQFEKAVAYARKLYELAAKT 80

                          90
                  ....*....|
gi 640675065   95 QAEFAKVAES 104
Cdd:pfam09361  81 QAEAAKPAEA 90
Phasin COG5490
Predicted polyhydroxyalkanoate (PHA)-binding protein, phasin family [Function unknown];
7-117 2.49e-06

Predicted polyhydroxyalkanoate (PHA)-binding protein, phasin family [Function unknown];


Pssm-ID: 444241 [Multi-domain]  Cd Length: 143  Bit Score: 44.98  E-value: 2.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640675065   7 EQIAAAQKAHLESLFGLTSKAFESVEKLIELNVQVVKSTLAESQENVQRALSVKDAQELLALQASFAQPLAEKALAYGRH 86
Cdd:COG5490   33 EEFKAAAKKNLEALEASAKTAAKGAQAIARKAAEYAKKNFEAAFAAAQKLAGAKSPQEAVELQSEFARSQFEAAVAQAKE 112

                         90       100       110
                 ....*....|....*....|....*....|.
gi 640675065  87 LYDIASSTQAEFAKVAESQYEEQNRKVQALV 117
Cdd:COG5490  113 LGELAAKLAKEAFKPLKARVSKAVEEAKAAA 143
 
Name Accession Description Interval E-value
phasin TIGR01841
phasin family protein; This model describes a family of small proteins found associated with ...
 27-114 1.26e-18

phasin family protein; This model describes a family of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins; the member from Rhodospirillum rubrum is an activator of polyhydroxybutyrate (PHB) degradation. However, the member from Magnetospirillum sp. AMB-1 is called a magnetic particle membrane-specific GTPase.


Pssm-ID: 130900  Cd Length: 88  Bit Score: 76.24  E-value: 1.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640675065   27 AFESVEKLIELNVQVVKSTLAESQENVQRALSVKDAQELLALQASFAQPLAEKALAYGRHLYDIASSTQAEFAKVAESQY 106
Cdd:TIGR01841   1 AFEGVERLVKLQLQALRATLDESVAASQRLASAGDPQELIALQTEFAKPAAEKLLAYSRELYEIAAKSQAEALKLLRDRF 80


                  ....*...
gi 640675065  107 EEQNRKVQ 114
Cdd:TIGR01841  81 AEGSREAQ 88
Phasin_2 pfam09361
Phasin protein; This entry describes a group of small proteins found associated with ...
 15-104 4.62e-15

Phasin protein; This entry describes a group of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins.


Pssm-ID: 462770  Cd Length: 90  Bit Score: 67.22  E-value: 4.62e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640675065   15 AHLESLFGLTSKAFESVEKLIELNVQVVKSTLAESQENVQRALSVKDAQELLALQASFAQPLAEKALAYGRHLYDIASST 94
Cdd:pfam09361   1 ANLEALVALASLAFKGAEKLAALNLEAARASLEESLAAAKALAGAKDPQELFELQSELARPQFEKAVAYARKLYELAAKT 80

                          90
                  ....*....|
gi 640675065   95 QAEFAKVAES 104
Cdd:pfam09361  81 QAEAAKPAEA 90
Phasin COG5490
Predicted polyhydroxyalkanoate (PHA)-binding protein, phasin family [Function unknown];
7-117 2.49e-06

Predicted polyhydroxyalkanoate (PHA)-binding protein, phasin family [Function unknown];


Pssm-ID: 444241 [Multi-domain]  Cd Length: 143  Bit Score: 44.98  E-value: 2.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640675065   7 EQIAAAQKAHLESLFGLTSKAFESVEKLIELNVQVVKSTLAESQENVQRALSVKDAQELLALQASFAQPLAEKALAYGRH 86
Cdd:COG5490   33 EEFKAAAKKNLEALEASAKTAAKGAQAIARKAAEYAKKNFEAAFAAAQKLAGAKSPQEAVELQSEFARSQFEAAVAQAKE 112

                         90       100       110
                 ....*....|....*....|....*....|.
gi 640675065  87 LYDIASSTQAEFAKVAESQYEEQNRKVQALV 117
Cdd:COG5490  113 LGELAAKLAKEAFKPLKARVSKAVEEAKAAA 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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