|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
1-300 |
0e+00 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 519.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 1 MSQITENKVVAAPVPMTPLQEFWHYFKRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPPFWQEGGSVSHL 80
Cdd:PRK10913 1 MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGGSWAHI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 81 LGTDDVGRDILSRLMYGARLSLLVGCLVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPS 160
Cdd:PRK10913 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 161 IVNASIALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFL 240
Cdd:PRK10913 161 IVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGVAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK10913 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
15-295 |
6.06e-108 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 314.74 E-value: 6.06e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 15 PMTPLQEFWHYFKRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPPfwqeggSVSHLLGTDDVGRDILSRL 94
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPP------SAAHWLGTDQLGRDVLSRL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 95 MYGARLSLLVGCLVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPSIVNASIALTFVALP 174
Cdd:COG1173 75 LYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 175 HYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTM 254
Cdd:COG1173 155 GYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTM 234
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 640682315 255 LSDVLQFAQSAWWVVTFPGVAILLTVLAFNLMGDGLRDALD 295
Cdd:COG1173 235 LSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
32-295 |
6.62e-73 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 224.96 E-value: 6.62e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 32 AVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPPFWQeggsvsHLLGTDDVGRDILSRLMYGARLSLLVGCLVVVL 111
Cdd:TIGR02790 1 VVSALLIIAVLFLLAIFAPWIAPHDPLAQNLPMRLLGPSME------YWLGTDHLGRCIFSRLIFGARVSLGSALLVLGL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 112 SLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPSIVNASIALTFVALPHYVRLTRAAVLVEVNRD 191
Cdd:TIGR02790 75 VLTIGLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQRE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 192 YVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTF 271
Cdd:TIGR02790 155 FVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIY 234
|
250 260
....*....|....*....|....
gi 640682315 272 PGVAILLTVLAFNLMGDGLRDALD 295
Cdd:TIGR02790 235 PGLAILISVMAFNLLGDALRDHLG 258
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
17-69 |
3.95e-15 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 68.21 E-value: 3.95e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 640682315 17 TPLQEFWHYFKRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPP 69
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
114-290 |
1.46e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 64.99 E-value: 1.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 114 ILGVVLGLVSGYFGGVVDSVIMRVVDIMLA--------LPSLLLALVLVAIFGPSIVNASIALTFVALPHYVRLTRAAVL 185
Cdd:cd06261 17 VLGLLLGIILARKRGKLDRLLRRIIDLLLSlpslvlglLLVLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 186 VEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAqPPTPEWGTMLSdvlqfaqsa 265
Cdd:cd06261 97 ESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTGLLLI--------- 166
|
170 180
....*....|....*....|....*
gi 640682315 266 wWVVTFPGVAILLTVLAFNLMGDGL 290
Cdd:cd06261 167 -FAILFPGDLGVAAAVALILLLLSL 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
1-300 |
0e+00 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 519.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 1 MSQITENKVVAAPVPMTPLQEFWHYFKRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPPFWQEGGSVSHL 80
Cdd:PRK10913 1 MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGGSWAHI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 81 LGTDDVGRDILSRLMYGARLSLLVGCLVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPS 160
Cdd:PRK10913 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 161 IVNASIALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFL 240
Cdd:PRK10913 161 IVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGVAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK10913 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
15-295 |
6.06e-108 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 314.74 E-value: 6.06e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 15 PMTPLQEFWHYFKRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPPfwqeggSVSHLLGTDDVGRDILSRL 94
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPP------SAAHWLGTDQLGRDVLSRL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 95 MYGARLSLLVGCLVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPSIVNASIALTFVALP 174
Cdd:COG1173 75 LYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 175 HYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTM 254
Cdd:COG1173 155 GYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTM 234
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 640682315 255 LSDVLQFAQSAWWVVTFPGVAILLTVLAFNLMGDGLRDALD 295
Cdd:COG1173 235 LSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
17-299 |
5.27e-87 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 262.06 E-value: 5.27e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 17 TPLQEFWHYFKRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPPFWQEGGSVSHLLGTDDVGRDILSRLMY 96
Cdd:COG4171 14 SPLKQIWQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIGALLLPPSWDDNGDVSFFLGTDDLGRDILSRLLY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 97 GARLSLLVGCLVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPSIVNASIALTFVALPHY 176
Cdd:COG4171 94 GARYTFGSALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLENAMLAITLALLPQF 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 177 VRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLS 256
Cdd:COG4171 174 IHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLGAQLPSPEWGAMLG 253
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 640682315 257 DVLQFAQSAWWVVTFPGVAILLTVLAFNLMGDGLRDALDPKLK 299
Cdd:COG4171 254 DSLELIYLAPWTVILPGLAIMFSVLIVNLVGDGLRRALNKGVE 296
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
32-295 |
6.62e-73 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 224.96 E-value: 6.62e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 32 AVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPPFWQeggsvsHLLGTDDVGRDILSRLMYGARLSLLVGCLVVVL 111
Cdd:TIGR02790 1 VVSALLIIAVLFLLAIFAPWIAPHDPLAQNLPMRLLGPSME------YWLGTDHLGRCIFSRLIFGARVSLGSALLVLGL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 112 SLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPSIVNASIALTFVALPHYVRLTRAAVLVEVNRD 191
Cdd:TIGR02790 75 VLTIGLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQRE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 192 YVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTF 271
Cdd:TIGR02790 155 FVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIY 234
|
250 260
....*....|....*....|....
gi 640682315 272 PGVAILLTVLAFNLMGDGLRDALD 295
Cdd:TIGR02790 235 PGLAILISVMAFNLLGDALRDHLG 258
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
1-298 |
4.42e-71 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 221.61 E-value: 4.42e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 1 MSQITENKVV--AAPVPMTPLQEFWHyFKRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPPfwqeggSVS 78
Cdd:PRK09881 1 MMLSEETSAVrpQKQTRFNGAKLVWM-LKGSPLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPP------SAA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 79 HLLGTDDVGRDILSRLMYGARLSLLVGCLVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFG 158
Cdd:PRK09881 74 HWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 159 PSIVNASIALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALG 238
Cdd:PRK09881 154 PSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLG 233
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 239 FLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGVAILLTVLAFNLMGDGLRDALDPKL 298
Cdd:PRK09881 234 FIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKA 293
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
17-300 |
4.74e-68 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 213.82 E-value: 4.74e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 17 TPLQEFWHYFKRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFR-DALLAPPfwqeggSVSHLLGTDDVGRDILSRLM 95
Cdd:PRK15082 23 TPWHEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDAENYFDyDALNAGP------SLQHWFGVDSLGRDIFSRIL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 96 YGARLSLLVGCLVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPSIVNASIALTFVALPH 175
Cdd:PRK15082 97 VGARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 176 YVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTML 255
Cdd:PRK15082 177 FARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAML 256
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 640682315 256 SDVLQFAQSAWWVVTFPGVAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK15082 257 NEARADMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPKIKG 301
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
27-299 |
5.75e-61 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 194.89 E-value: 5.75e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 27 KRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPPFWQeggsvsHLLGTDDVGRDILSRLMYGARLSLLVGC 106
Cdd:PRK10417 1 SSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQ------HWLGTDHLGRDIFSRLMAGTRVSLGSVM 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 107 LVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPSIVNASIAltfVALPH---YVRLTRAA 183
Cdd:PRK10417 75 ACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIA---IALSHwawYARMVRSL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 184 VLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQ 263
Cdd:PRK10417 152 VISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIW 231
|
250 260 270
....*....|....*....|....*....|....*.
gi 640682315 264 SAWWVVTFPGVAILLTVLAFNLMGDGLRDALDPKLK 299
Cdd:PRK10417 232 TQPLLMFWPGLALFISVMAFNLLGDALRDHLDPHLV 267
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
15-295 |
1.13e-60 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 194.92 E-value: 1.13e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 15 PMTPLQEFWHYFKRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPPFWQEGGSVSHLLGTDDVGRDILSRL 94
Cdd:PRK15111 12 PPGTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 95 MYGARLSLLVGCLVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPSIVNASIALTFVALP 174
Cdd:PRK15111 92 LSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALLP 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 175 HYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTM 254
Cdd:PRK15111 172 RMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAM 251
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 640682315 255 LSDVLQFAQSAWWVVTFPGVAILLTVLAFNLMGDGLRDALD 295
Cdd:PRK15111 252 LGDSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
26-297 |
9.64e-40 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 140.74 E-value: 9.64e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 26 FKRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPPFWQEGgsvsHLLGTDDVGRDILSRLMYGARLSLLVG 105
Cdd:PRK15406 33 FMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMESG----HYFGTDSSGRDLLVRVAIGGRISLMVG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 106 CLVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPSIVNASIALTFVALPHYVRLTRAAVL 185
Cdd:PRK15406 109 VAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 186 VEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSA 265
Cdd:PRK15406 189 SLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVS 268
|
250 260 270
....*....|....*....|....*....|..
gi 640682315 266 WWVVTFPGVAILLTVLAFNLMGDGLRDALDPK 297
Cdd:PRK15406 269 PWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
67-297 |
9.61e-39 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 139.13 E-value: 9.61e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 67 APPFWQeggsvsHLLGTDDVGRDILSRLMYGARLSLLVGCLVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPS 146
Cdd:COG4239 115 SPPSAE------NWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPE 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 147 LLLALVLVAIFGPSI-VNASIALTF--VALPHYVrltRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQA 223
Cdd:COG4239 189 LYLLIILSSIFQPSFwLLLGILLLFgwMGLVGVV---RAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLTFL 265
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 640682315 224 SLGFSNAILDMAALGFLGMGAQPPTPEWGTMLS---DVLQfaqsAWWVV--TFPGVAILLTVLAFnlMGDGLRDALDPK 297
Cdd:COG4239 266 PFILSGAITTLTSLDFLGFGLPPGSPSLGELLAqgkNNLQ----APWLGlsAFVVLALMLSLLVF--IGEAVRDAFDPR 338
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
76-296 |
1.05e-20 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 90.43 E-value: 1.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 76 SVSHLLGTDDVGRDILSRLMYGARLSLLVGCLVVVLSLILGVVLGLVSGYFGGVVDSVIMRVVDIMLALPSLLLALVLVA 155
Cdd:PRK15021 118 SRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSS 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 156 IFGPS---IVNASIALTFVALphyVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAIL 232
Cdd:PRK15021 198 VVQPNfwwLLAITVLFGWMSL---VGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSIT 274
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 640682315 233 DMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVT-FPGVAILLTVLAFnlMGDGLRDALDP 296
Cdd:PRK15021 275 TLTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITaFLSVAILLSLLIF--IGEAVRDAFDP 337
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
17-69 |
3.95e-15 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 68.21 E-value: 3.95e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 640682315 17 TPLQEFWHYFKRNKGAVVGLAYVVVMIIIAIFANFLAPYNPADQFRDALLAPP 69
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
114-290 |
1.46e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 64.99 E-value: 1.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 114 ILGVVLGLVSGYFGGVVDSVIMRVVDIMLA--------LPSLLLALVLVAIFGPSIVNASIALTFVALPHYVRLTRAAVL 185
Cdd:cd06261 17 VLGLLLGIILARKRGKLDRLLRRIIDLLLSlpslvlglLLVLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 186 VEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAqPPTPEWGTMLSdvlqfaqsa 265
Cdd:cd06261 97 ESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTGLLLI--------- 166
|
170 180
....*....|....*....|....*
gi 640682315 266 wWVVTFPGVAILLTVLAFNLMGDGL 290
Cdd:cd06261 167 -FAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-300 |
2.39e-12 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 64.24 E-value: 2.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 116 GVVLGLVSG-YFGGVVDSVIMRVVDIMLALPSLLLALVLVAIFGPSI----VNASIALTFVALPHYVRLTRAAVLVEVNR 190
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSIlghgILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 191 DYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFL----GMGAQPPTPEWGTMLSdvlqfaqsaw 266
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP---------- 150
|
170 180 190
....*....|....*....|....*....|....
gi 640682315 267 wVVTFPGVAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:pfam00528 151 -EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
114-231 |
3.58e-03 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 38.51 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640682315 114 ILGVVLGLVSGYF-GGVVDSVIMRVVDIMLALPSLLLALVLVAIFG---------------PSIVNA-------SIALTF 170
Cdd:COG0601 111 LIGIPLGILAALRrGSWLDRLITVLALLGISIPSFWLGLLLILLFAvklgwlpvsgrvspwEDFLDAlrhlilpALTLAL 190
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 640682315 171 VALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAI 231
Cdd:COG0601 191 GSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLL 251
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
166-231 |
6.59e-03 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 37.38 E-value: 6.59e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 640682315 166 IALTFVALPHYVRLTRAAVlVEVNRDYVTASRVAGAGAMrQMFINI-LPNCLAPLIVQASLGFSNAI 231
Cdd:TIGR01581 108 LAQTFVASPYYVRVARSTF-KSVDPRYEDVARSLGAGPL-ETFRKItLPMARPGLLAGLVLAWARAL 172
|
|
| |
